mRNA_L-elsbetiae_contig13911.2943.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13911.2943.1
Unique NamemRNA_L-elsbetiae_contig13911.2943.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13911.2943.1 vs. uniprot
Match: D8LNZ5_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNZ5_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.510e-25
Identity = 80/100 (80.00%), Postives = 84/100 (84.00%), Query Frame = -2 
Query:    3 EKVQALATELLRIRSGGGDXXXXXXXXXXXVSAETLRELAVASTPARQAQRPLTRASGSRSGSMDASAAVQRELTLLRARAAEAEGEVVRLTEEAKRARR 302
            EKVQALA ELLRIRSG   XXXXXXXX   VSAETLRELA ASTPARQ+ RPL RAS SRSG +DASA VQRELT+LRAR AEAEGEVVRLTEE K AR+
Sbjct:  374 EKVQALAAELLRIRSGXXXXXXXXXXXD--VSAETLRELAAASTPARQSPRPLARASFSRSGPLDASAPVQRELTMLRARVAEAEGEVVRLTEETKLARK 471
[Close]
BLAST of mRNA_L-elsbetiae_contig13911.2943.1 vs. uniprot
Match: A0A6H5KW93_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW93_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.530e-19
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = -2 
Query:    3 VSAETLRELAVASTPARQAQRPLTRASGSRSGSMDASAAVQRELTLLRARAAEAEGEVVRLTEEAKRARR 212
            VSAETLRELA ASTPARQ+ RPL RAS SRSG +DAS  VQRELT+LRAR AEAEGEVVRLTEE K AR+
Sbjct:  354 VSAETLRELAAASTPARQSPRPLARASFSRSGPLDASVPVQRELTMLRARVAEAEGEVVRLTEETKLARK 423
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13911.2943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNZ5_ECTSI1.510e-2580.00Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KW93_9PHAE3.530e-1980.00Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13911contigL-elsbetiae_contig13911:1571..1873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.3725536-CDS-L-elsbetiae_contig13911:1570..18731622815547.3725536-CDS-L-elsbetiae_contig13911:1570..1873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13911 1571..1873 +
1691682952.304307-CDS-L-elsbetiae_contig13911:1570..18731691682952.304307-CDS-L-elsbetiae_contig13911:1570..1873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13911 1571..1873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13911.2943.1prot_L-elsbetiae_contig13911.2943.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13911 1571..1873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13911.2943.1

>prot_L-elsbetiae_contig13911.2943.1 ID=prot_L-elsbetiae_contig13911.2943.1|Name=mRNA_L-elsbetiae_contig13911.2943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
RLRARLASSVSRTTSPSASAALALSRVSSRCTAADASIDPDRLPLALVSG
LCACRAGVDATASSRRVSAETPPPPPPSPPLPSPPPERIRRSSVARACTF
S
back to top

mRNA from alignment at L-elsbetiae_contig13911:1571..1873+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13911.2943.1 ID=mRNA_L-elsbetiae_contig13911.2943.1|Name=mRNA_L-elsbetiae_contig13911.2943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=303bp|location=Sequence derived from alignment at L-elsbetiae_contig13911:1571..1873+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCTGCGCGCCCGCTTGGCTTCCTCCGTCAGCCGCACCACCTCCCCCTC
CGCTTCCGCCGCCCTCGCCCTCAGCAGGGTCAGCTCGCGCTGCACGGCGG
CTGACGCGTCCATCGACCCCGACCGGCTGCCGCTCGCCCTCGTGAGCGGC
CTCTGCGCCTGCCGCGCGGGAGTGGACGCCACGGCTAGCTCCCGGAGAGT
CTCCGCCGAGACGCCGCCGCCGCCGCCCCCATCGCCGCCGCTGCCGTCGC
CGCCGCCCGAGCGTATTCGCAGGAGCTCCGTCGCGAGGGCTTGCACCTTC
TCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13911:1571..1873+

>mRNA_L-elsbetiae_contig13911.2943.1 ID=mRNA_L-elsbetiae_contig13911.2943.1|Name=mRNA_L-elsbetiae_contig13911.2943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig13911:1571..1873+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCTGCGCGCCCGCTTGGCTTCCTCCGTCAGCCGCACCACCTCCCCCTC
CGCTTCCGCCGCCCTCGCCCTCAGCAGGGTCAGCTCGCGCTGCACGGCGG
CTGACGCGTCCATCGACCCCGACCGGCTGCCGCTCGCCCTCGTGAGCGGC
CTCTGCGCCTGCCGCGCGGGAGTGGACGCCACGGCTAGCTCCCGGAGAGT
CTCCGCCGAGACGCCGCCGCCGCCGCCCCCATCGCCGCCGCTGCCGTCGC
CGCCGCCCGAGCGTATTCGCAGGAGCTCCGTCGCGAGGGCTTGCACCTTC
TCCCGCCTGCGCGCCCGCTTGGCTTCCTCCGTCAGCCGCACCACCTCCCC
CTCCGCTTCCGCCGCCCTCGCCCTCAGCAGGGTCAGCTCGCGCTGCACGG
CGGCTGACGCGTCCATCGACCCCGACCGGCTGCCGCTCGCCCTCGTGAGC
GGCCTCTGCGCCTGCCGCGCGGGAGTGGACGCCACGGCTAGCTCCCGGAG
AGTCTCCGCCGAGACGCCGCCGCCGCCGCCCCCATCGCCGCCGCTGCCGT
CGCCGCCGCCCGAGCGTATTCGCAGGAGCTCCGTCGCGAGGGCTTGCACC
TTCTCC
back to top