mRNA_L-elsbetiae_contig13911.2942.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13911.2942.1
Unique NamemRNA_L-elsbetiae_contig13911.2942.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13911.2942.1 vs. uniprot
Match: D8LNZ5_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNZ5_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.790e-16
Identity = 72/159 (45.28%), Postives = 80/159 (50.31%), Query Frame = -1 
Query:    1 LDIAEVA----GGSGEAAGAGTGVRAAERVTPSGGE-NVSPKVGFGGVIKGFFSPKVGSGGGSSXXXXXXXXXXXXXXXXXXXXXXXXXPGEGAQDEAXXXXXXXXXXXEANKKQEAPREQALAVVKDFHRRIQGLEEKLHDSERQRAALERQLVQTSG 462
            LDIAE A    G  G+AA     +  AE    S GE NVSPK   GGV+KGFFS   GS   S                           G+G    A              K + A RE+ALAVVKDFH+RIQ LE KLHDSERQRAALERQLVQ+SG
Sbjct:  505 LDIAEAAEEAVGDGGDAAATAASLVEAEAQEESTGEENVSPKSRLGGVLKGFFSGSAGSTTRSKSPGSSSSSGALGDGGGTHRRPEGEASGQGPSSAAGAPRGA--------KPEAAARERALAVVKDFHQRIQALEGKLHDSERQRAALERQLVQSSG 655
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BLAST of mRNA_L-elsbetiae_contig13911.2942.1 vs. uniprot
Match: A0A6H5KW93_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW93_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.710e-15
Identity = 71/159 (44.65%), Postives = 79/159 (49.69%), Query Frame = -1 
Query:    1 LDIAEVA----GGSGEAAGAGTGVRAAERVTPSGGE-NVSPKVGFGGVIKGFFSPKVGSGGGSSXXXXXXXXXXXXXXXXXXXXXXXXXPGEGAQDEAXXXXXXXXXXXEANKKQEAPREQALAVVKDFHRRIQGLEEKLHDSERQRAALERQLVQTSG 462
            LDIAE A    G S +AA A   +  AE    S GE N+SPK   GGV+KGFFS   GS   S                           G      A              K + A RE+ALAVVKDFH+RIQ LE KLHDSERQRAALERQLVQ+SG
Sbjct:  457 LDIAEAAEEGVGDSSDAAAAAASLVEAEAQEESTGEENISPKARLGGVLKGFFSGSAGSTTRSKSPGSCSSSDALGDGGGTQRRPEGEASGREPSSAAGAPRRA--------KPEAAARERALAVVKDFHQRIQALEGKLHDSERQRAALERQLVQSSG 607
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13911.2942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNZ5_ECTSI1.790e-1645.28Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KW93_9PHAE1.710e-1544.65Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13911contigL-elsbetiae_contig13911:1003..1465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.3393123-CDS-L-elsbetiae_contig13911:1002..14641622815547.3393123-CDS-L-elsbetiae_contig13911:1002..1464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13911 1003..1464 +
1691682952.2947547-CDS-L-elsbetiae_contig13911:1002..14641691682952.2947547-CDS-L-elsbetiae_contig13911:1002..1464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13911 1003..1464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13911.2942.1prot_L-elsbetiae_contig13911.2942.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13911 1003..1464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13911.2942.1

>prot_L-elsbetiae_contig13911.2942.1 ID=prot_L-elsbetiae_contig13911.2942.1|Name=mRNA_L-elsbetiae_contig13911.2942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
SAGLHQLPLQGRSLPLRVVQLLLQPLNPPVEILHHGEGLLPRRLLLLIRL
RGGRPVPACRTGLVLRPLPGGAGVAATATTTASASATAVRRRLGAARSAA
GPNLRGKKALDDAAEPNLRGNVLTSGGRHALRGSDTGAGARGFAAPPRHL
GDVQ
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mRNA from alignment at L-elsbetiae_contig13911:1003..1465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13911.2942.1 ID=mRNA_L-elsbetiae_contig13911.2942.1|Name=mRNA_L-elsbetiae_contig13911.2942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=463bp|location=Sequence derived from alignment at L-elsbetiae_contig13911:1003..1465+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCTGGTTTGCACCAGTTGCCGCTCCAGGGCCGCTCTCTGCCTCTCCG
AGTCGTGCAGCTTCTCCTCCAGCCCTTGAATCCGCCGGTGGAAATCCTTC
ACCACGGCGAGGGCCTGCTCCCGCGGCGCCTCCTGCTTCTTATTCGCCTC
CGAGGAGGAAGACCCGTGCCCGCTTGCCGCACCGGCCTCGTCTTGCGCCC
CCTCCCCGGGGGCGCCGGAGTTGCCGCTACCGCTACCACTACCGCTAGCG
CTAGCGCCACCGCCGTGCGACGGCGACTTGGAGCGGCTCGATCCGCCGCC
GGACCCAACCTTCGGGGAAAAAAAGCCCTTGATGACGCCGCCGAACCCAA
CCTTCGGGGAAACGTTCTCACCTCCGGAGGGCGTCACGCGCTCCGCGGCT
CGGACACCGGTGCCGGCGCCCGCGGCTTCGCCGCTCCCCCCCGCCACCTC
GGCGATGTCCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13911:1003..1465+

>mRNA_L-elsbetiae_contig13911.2942.1 ID=mRNA_L-elsbetiae_contig13911.2942.1|Name=mRNA_L-elsbetiae_contig13911.2942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig13911:1003..1465+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCTGGTTTGCACCAGTTGCCGCTCCAGGGCCGCTCTCTGCCTCTCCG
AGTCGTGCAGCTTCTCCTCCAGCCCTTGAATCCGCCGGTGGAAATCCTTC
ACCACGGCGAGGGCCTGCTCCCGCGGCGCCTCCTGCTTCTTATTCGCCTC
CGAGGAGGAAGACCCGTGCCCGCTTGCCGCACCGGCCTCGTCTTGCGCCC
CCTCCCCGGGGGCGCCGGAGTTGCCGCTACCGCTACCACTACCGCTAGCG
CTAGCGCCACCGCCGTGCGACGGCGACTTGGAGCGGCTCGATCCGCCGCC
GGACCCAACCTTCGGGGAAAAAAAGCCCTTGATGACGCCGCCGAACCCAA
CCTTCGGGGAAACGTTCTCACCTCCGGAGGGCGTCACGCGCTCCGCGGCT
CGGACACCGGTGCCGGCGCCCGCGGCTTCGCCGCTCCCCCCCGCCACCTC
GGCGATGTCCAGTCCGCTGGTTTGCACCAGTTGCCGCTCCAGGGCCGCTC
TCTGCCTCTCCGAGTCGTGCAGCTTCTCCTCCAGCCCTTGAATCCGCCGG
TGGAAATCCTTCACCACGGCGAGGGCCTGCTCCCGCGGCGCCTCCTGCTT
CTTATTCGCCTCCGAGGAGGAAGACCCGTGCCCGCTTGCCGCACCGGCCT
CGTCTTGCGCCCCCTCCCCGGGGGCGCCGGAGTTGCCGCTACCGCTACCA
CTACCGCTAGCGCTAGCGCCACCGCCGTGCGACGGCGACTTGGAGCGGCT
CGATCCGCCGCCGGACCCAACCTTCGGGGAAAAAAAGCCCTTGATGACGC
CGCCGAACCCAACCTTCGGGGAAACGTTCTCACCTCCGGAGGGCGTCACG
CGCTCCGCGGCTCGGACACCGGTGCCGGCGCCCGCGGCTTCGCCGCTCCC
CCCCGCCACCTCGGCGATGTCCAG
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