mRNA_L-elsbetiae_contig13909.2938.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13909.2938.1
Unique NamemRNA_L-elsbetiae_contig13909.2938.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13909.2938.1 vs. uniprot
Match: A0A6H5JH71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH71_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.570e-19
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 EADLGETVRFVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDMARG 138
            ++ L +TVR VGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWD+ARG
Sbjct:  401 DSGLSDTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDIARG 446
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BLAST of mRNA_L-elsbetiae_contig13909.2938.1 vs. uniprot
Match: D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.860e-19
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 EADLGETVRFVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDMARG 138
            ++ L +TVR VGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWD+ARG
Sbjct:  419 DSGLADTVRLVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDIARG 464
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BLAST of mRNA_L-elsbetiae_contig13909.2938.1 vs. uniprot
Match: A0A835YMV1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.180e-10
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   22 VRFVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDM 129
            VR VGH++P+Y +SW+PD RFLL+ GGDG VRLWD+
Sbjct:  424 VRLVGHTKPIYSLSWAPDSRFLLTGGGDGVVRLWDL 459
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BLAST of mRNA_L-elsbetiae_contig13909.2938.1 vs. uniprot
Match: A0A1E4TCQ6_9ASCO (LisH domain-containing protein n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TCQ6_9ASCO)

HSP 1 Score: 57.8 bits (138), Expect = 1.780e-8
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 EADLGETVRFVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDMARGAA 144
            +A+   T RF+GHS PVYGV++SPDGR++ SA  D  VRLW +  G A
Sbjct:  466 DAENTSTWRFIGHSGPVYGVNFSPDGRYVASASEDKTVRLWSVETGTA 513
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BLAST of mRNA_L-elsbetiae_contig13909.2938.1 vs. uniprot
Match: A0A7Y5V1Y3_9CHLR (TIR domain-containing protein (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7Y5V1Y3_9CHLR)

HSP 1 Score: 56.2 bits (134), Expect = 6.240e-8
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   13 GETVRFVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDMARGA 141
            GE  R+VGH+  + G+++SPDGR++LSAG D  VR+WD A GA
Sbjct:  856 GEVRRYVGHTDTIAGMTFSPDGRWMLSAGYDDSVRVWDAATGA 898
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BLAST of mRNA_L-elsbetiae_contig13909.2938.1 vs. uniprot
Match: A0A7S0HK76_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HK76_9CRYP)

HSP 1 Score: 54.3 bits (129), Expect = 1.300e-7
Identity = 19/35 (54.29%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   34 GHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDMARG 138
            GH + +Y VSWSPDGRF+ +AG DG +++WD  +G
Sbjct:   69 GHEEAIYSVSWSPDGRFVQTAGSDGAIKIWDWRKG 103
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BLAST of mRNA_L-elsbetiae_contig13909.2938.1 vs. uniprot
Match: A0A150GP73_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GP73_GONPE)

HSP 1 Score: 53.9 bits (128), Expect = 4.090e-7
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:   31 VGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDMARG 138
            VGH  PV  V+WSPDGR +  AGGDG VRLW+ A G
Sbjct: 1128 VGHMGPVNAVAWSPDGRLIAGAGGDGTVRLWEAATG 1163
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BLAST of mRNA_L-elsbetiae_contig13909.2938.1 vs. uniprot
Match: A0A7S4NIX0_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NIX0_GUITH)

HSP 1 Score: 53.1 bits (126), Expect = 7.610e-7
Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   34 GHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDMARG 138
            GH++ +Y VSWSPDGR +L+AG DG +++WD  +G
Sbjct:   56 GHAEAIYAVSWSPDGRSVLTAGSDGEIKIWDWRKG 90
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BLAST of mRNA_L-elsbetiae_contig13909.2938.1 vs. uniprot
Match: A0A7R8W5E2_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8W5E2_9CRUS)

HSP 1 Score: 53.1 bits (126), Expect = 7.630e-7
Identity = 25/42 (59.52%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    4 ADLGETVRFVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDM 129
            ADL + +    HS  VYGVSWSPDGR LLS  GD   RLWD+
Sbjct:  221 ADLVQEIGSPAHSGGVYGVSWSPDGRQLLSCSGDKTCRLWDV 262
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BLAST of mRNA_L-elsbetiae_contig13909.2938.1 vs. uniprot
Match: A0A0E9NFN2_SAICN (LisH domain-containing protein n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NFN2_SAICN)

HSP 1 Score: 52.8 bits (125), Expect = 1.040e-6
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   19 TVRFVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDM 129
            T R +GHS PVYGVS+SPD ++LLS   D  VRLW M
Sbjct:  380 TRRMIGHSGPVYGVSFSPDSKYLLSCSEDKSVRLWSM 416
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13909.2938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH71_9PHAE1.570e-1984.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXT3_ECTSI1.860e-1984.78TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A835YMV1_9STRA4.180e-1066.67WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A1E4TCQ6_9ASCO1.780e-854.17LisH domain-containing protein n=1 Tax=Tortispora ... [more]
A0A7Y5V1Y3_9CHLR6.240e-855.81TIR domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S0HK76_9CRYP1.300e-754.29Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A150GP73_GONPE4.090e-763.89Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A7S4NIX0_GUITH7.610e-754.29Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7R8W5E2_9CRUS7.630e-759.52Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A0E9NFN2_SAICN1.040e-662.16LisH domain-containing protein n=2 Tax=Saitoella c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13909contigL-elsbetiae_contig13909:339..482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue6.7e-16
Seed eggNOG ortholog2880.D7FXT3
KEGG koko:K03130
KEGG Pathwayko03022,ko05168,map03022,map05168
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000280,GO:0000428,GO:0001673,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030880,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044798,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0051321,GO:0051704,GO:0055029,GO:0060255,GO:0061695,GO:0061982,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090575,GO:0097659,GO:0140013,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903046,GO:1990234
EggNOG free text desc.transcription initiation from RNA polymerase II promoter
EggNOG OGsCOG2319@1,KOG0263@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.9954257-CDS-L-elsbetiae_contig13909:338..4821622815546.9954257-CDS-L-elsbetiae_contig13909:338..482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13909 339..482 +
1691682952.0906417-CDS-L-elsbetiae_contig13909:338..4821691682952.0906417-CDS-L-elsbetiae_contig13909:338..482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13909 339..482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13909.2938.1prot_L-elsbetiae_contig13909.2938.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13909 339..482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13909.2938.1

>prot_L-elsbetiae_contig13909.2938.1 ID=prot_L-elsbetiae_contig13909.2938.1|Name=mRNA_L-elsbetiae_contig13909.2938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=48bp
EADLGETVRFVGHSQPVYGVSWSPDGRFLLSAGGDGGVRLWDMARGAA
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mRNA from alignment at L-elsbetiae_contig13909:339..482+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13909.2938.1 ID=mRNA_L-elsbetiae_contig13909.2938.1|Name=mRNA_L-elsbetiae_contig13909.2938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=144bp|location=Sequence derived from alignment at L-elsbetiae_contig13909:339..482+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGCGGACCTGGGCGAGACGGTGAGGTTCGTGGGCCACTCGCAGCCGGT
GTACGGCGTCTCTTGGTCCCCCGACGGGAGGTTCTTGCTGTCCGCCGGCG
GGGACGGGGGGGTCCGGCTGTGGGACATGGCGAGGGGCGCGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13909:339..482+

>mRNA_L-elsbetiae_contig13909.2938.1 ID=mRNA_L-elsbetiae_contig13909.2938.1|Name=mRNA_L-elsbetiae_contig13909.2938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=288bp|location=Sequence derived from alignment at L-elsbetiae_contig13909:339..482+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGCGGACCTGGGCGAGACGGTGAGGTTCGTGGGCCACTCGCAGCCGGT
GTACGGCGTCTCTTGGTCCCCCGACGGGAGGTTCTTGCTGTCCGCCGGCG
GGGACGGGGGGGTCCGGCTGTGGGACATGGCGAGGGGCGCGGCCGAGGCG
GACCTGGGCGAGACGGTGAGGTTCGTGGGCCACTCGCAGCCGGTGTACGG
CGTCTCTTGGTCCCCCGACGGGAGGTTCTTGCTGTCCGCCGGCGGGGACG
GGGGGGTCCGGCTGTGGGACATGGCGAGGGGCGCGGCC
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