mRNA_L-elsbetiae_contig13893.2930.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13893.2930.1
Unique NamemRNA_L-elsbetiae_contig13893.2930.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13893.2930.1 vs. uniprot
Match: A0A6H5KJU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU0_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 4.520e-48
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 1
Query:    4 YLRLVDKFNEQNVSAFLTAGGAKLMLLHDGRPDDAIRTFFAEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKLL 240
            YLRLVDKFNEQNVSAFLTAGGAKLMLLHDGR DDAIRTFFAEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKLL
Sbjct:   62 YLRLVDKFNEQNVSAFLTAGGAKLMLLHDGRTDDAIRTFFAEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKLL 140          
BLAST of mRNA_L-elsbetiae_contig13893.2930.1 vs. uniprot
Match: A0A835Z2S7_9STRA (Sedlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2S7_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.690e-31
Identity = 53/79 (67.09%), Postives = 67/79 (84.81%), Query Frame = 1
Query:    4 YLRLVDKFNEQNVSAFLTAGGAKLMLLHDGRPDDAIRTFFAEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKLL 240
            YLR+VDKFNEQ VSA+LTA G +LMLLHDGR ++ I +FF +VHELYVK ++NPFY +D+P+ISP FD+RV+ALA K L
Sbjct:   61 YLRVVDKFNEQIVSAYLTAAGVRLMLLHDGRSEEGIGSFFKDVHELYVKHMLNPFYRFDTPIISPEFDERVRALAVKWL 139          
BLAST of mRNA_L-elsbetiae_contig13893.2930.1 vs. uniprot
Match: A0A7S0FIJ0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FIJ0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.990e-30
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    4 YLRLVDKFNEQNVSAFLTAGGAKLMLLHDGRPDDAIRTFFAEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKLL 240
            YL++VDK N Q VS FLTAG  K MLLH G+ +D+I+ FF++V+ELYVKLL+NPFYAYD+P+ S AFD RV+A+AR+ L
Sbjct:   56 YLKVVDKVNHQQVSTFLTAGNVKFMLLHGGKNEDSIKNFFSDVYELYVKLLLNPFYAYDTPITSKAFDTRVRAIARRYL 134          
BLAST of mRNA_L-elsbetiae_contig13893.2930.1 vs. uniprot
Match: A0A7S2US08_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US08_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.280e-30
Identity = 48/77 (62.34%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    4 YLRLVDKFNEQNVSAFLTAGGAKLMLLHDGRPDDAIRTFFAEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARK 234
            YL+ +DKFN+ ++S ++TA G + +LLHDGR DDAI+ FF++V+ELYV+LLMNPFY YDS V+SPAFD RV+ LAR+
Sbjct:   59 YLKTIDKFNDMSISGWITAQGIRFLLLHDGRSDDAIKNFFSDVYELYVRLLMNPFYKYDSQVLSPAFDHRVRILARR 135          
BLAST of mRNA_L-elsbetiae_contig13893.2930.1 vs. uniprot
Match: H3G6S7_PHYRM (Uncharacterized protein n=25 Tax=Peronosporaceae TaxID=4777 RepID=H3G6S7_PHYRM)

HSP 1 Score: 109 bits (273), Expect = 3.630e-29
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 1
Query:    7 LRLVDKFNEQNVSAFLTAGGAKLMLLHDGRPDDAIRTFFAEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKLL 240
            L++VD+FN+Q VSAF+TA G K +LLH+ R DD ++ FF EVHELYVKLLMNPFY YD+P+ S  FD RVK LAR+ L
Sbjct:   54 LKVVDRFNDQLVSAFVTASGVKFLLLHETRNDDTVKAFFHEVHELYVKLLMNPFYEYDTPISSEVFDARVKTLARRYL 131          
BLAST of mRNA_L-elsbetiae_contig13893.2930.1 vs. uniprot
Match: A0A7R9WLH9_9STRA (Trafficking protein particle complex subunit n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WLH9_9STRA)

HSP 1 Score: 107 bits (266), Expect = 5.570e-28
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    4 YLRLVDKFNEQNVSAFLTAGGAKLMLLHDGRPDDAIRTFFAEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKLL 240
            YLR+VDK N Q VSAF TAG  K MLLH G+ DD IR FF EV+ELYVK+ MNPFY YD+P+ S  FD+RV+++AR+ L
Sbjct:   62 YLRVVDKVNHQQVSAFQTAGNIKFMLLHAGKSDDTIRNFFNEVYELYVKVSMNPFYHYDTPITSKEFDKRVRSVARRYL 140          
BLAST of mRNA_L-elsbetiae_contig13893.2930.1 vs. uniprot
Match: K3WSU6_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WSU6_GLOUD)

HSP 1 Score: 106 bits (265), Expect = 5.630e-28
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    7 LRLVDKFNEQNVSAFLTAGGAKLMLLHDGRPDDAIRTFFAEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKLL 240
            L++VDKFN+Q VSAF+TA   K +LLH+ R DD I+ FF EVHELY+KLLMNPFY YD+P+ S  FD RVK LAR+ L
Sbjct:   52 LKVVDKFNDQLVSAFVTATSVKFLLLHETRNDDTIKAFFHEVHELYLKLLMNPFYEYDTPIKSEVFDARVKTLARRYL 129          
BLAST of mRNA_L-elsbetiae_contig13893.2930.1 vs. uniprot
Match: A0A1Z5K0Y6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0Y6_FISSO)

HSP 1 Score: 107 bits (266), Expect = 5.890e-28
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    4 YLRLVDKFNEQNVSAFLTAGGAKLMLLHD---GRPDDAIRTFFAEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKLL 240
            YL++VDK N+Q VS FLTAG  KLMLLH+    + ++AIR FF +V+ELYVK  MNPFYAYD+P+IS AFD RV+AL RK L
Sbjct:   61 YLKIVDKVNQQQVSTFLTAGNIKLMLLHNVHQNKSEEAIRQFFQDVYELYVKFSMNPFYAYDTPIISEAFDTRVRALGRKYL 142          
BLAST of mRNA_L-elsbetiae_contig13893.2930.1 vs. uniprot
Match: A0A7S1VQ48_9STRA (Trafficking protein particle complex subunit n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQ48_9STRA)

HSP 1 Score: 106 bits (265), Expect = 7.260e-28
Identity = 48/79 (60.76%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    4 YLRLVDKFNEQNVSAFLTAGGAKLMLLHDGRPDDAIRTFFAEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKLL 240
            YL++VDK N+Q VS FLTAG  K MLLH GR +D+IR FF +V+ELYVKL MNPFY YD+P+ + +FD RV+ +AR+ L
Sbjct:   59 YLKVVDKVNQQQVSTFLTAGNIKFMLLHSGRSEDSIRNFFNDVYELYVKLSMNPFYRYDTPITAKSFDTRVRQVARRYL 137          
BLAST of mRNA_L-elsbetiae_contig13893.2930.1 vs. uniprot
Match: A0A7S2N4C3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N4C3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.130e-27
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    4 YLRLVDKFNEQNVSAFLTAGGAKLMLLHDGRPDDAIRTFFAEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKLL 240
            YL++VDK N Q VS FLTAG  K MLLH GR +D+I+ FF +++ELYVKL MNPFY YD+P+ S  FD RV+A+AR+ L
Sbjct:   75 YLKVVDKVNHQQVSTFLTAGNIKFMLLHGGRSEDSIKNFFTDIYELYVKLSMNPFYKYDTPISSKNFDTRVRAIARRYL 153          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13893.2930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJU0_9PHAE4.520e-4898.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z2S7_9STRA1.690e-3167.09Sedlin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S0FIJ0_9STRA4.990e-3063.29Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2US08_9STRA5.280e-3062.34Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
H3G6S7_PHYRM3.630e-2964.10Uncharacterized protein n=25 Tax=Peronosporaceae T... [more]
A0A7R9WLH9_9STRA5.570e-2863.29Trafficking protein particle complex subunit n=1 T... [more]
K3WSU6_GLOUD5.630e-2864.10Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
A0A1Z5K0Y6_FISSO5.890e-2863.41Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S1VQ48_9STRA7.260e-2860.76Trafficking protein particle complex subunit n=1 T... [more]
A0A7S2N4C3_9STRA1.130e-2760.76Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13893contigL-elsbetiae_contig13893:543..1270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue4.7e-22
Seed eggNOG ortholog164328.Phyra39722
Preferred nameTRAPPC2
KEGG koko:K20301
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0001101,GO:0001501,GO:0002376,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005801,GO:0005829,GO:0006355,GO:0006403,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007283,GO:0008104,GO:0008134,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009627,GO:0009719,GO:0009725,GO:0009733,GO:0009751,GO:0009814,GO:0009862,GO:0009863,GO:0009889,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0012505,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017112,GO:0017137,GO:0019219,GO:0019222,GO:0019899,GO:0019953,GO:0022414,GO:0022607,GO:0023052,GO:0030008,GO:0031267,GO:0031323,GO:0031326,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032991,GO:0033036,GO:0033227,GO:0034613,GO:0035690,GO:0036094,GO:0042221,GO:0042493,GO:0042742,GO:0042886,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044325,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045087,GO:0045184,GO:0046677,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048471,GO:0048609,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061024,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071229,GO:0071236,GO:0071310,GO:0071407,GO:0071446,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090114,GO:0097159,GO:0097708,GO:0098542,GO:0098772,GO:0099023,GO:1901265,GO:1901363,GO:1901700,GO:1901701,GO:1903506,GO:1990070,GO:1990071,GO:1990072,GO:2000112,GO:2001141
EggNOG free text desc.Sedlin, N-terminal conserved region
EggNOG OGs3QFNQ@4776,COG5603@1,KOG3487@2759
Ec32 ortholog descriptionSedlin
Ec32 orthologEc-19_000860.1
COG Functional cat.U
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.3087437-CDS-L-elsbetiae_contig13893:542..6921622815546.3087437-CDS-L-elsbetiae_contig13893:542..692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13893 543..692 +
1691682951.6642597-CDS-L-elsbetiae_contig13893:542..6921691682951.6642597-CDS-L-elsbetiae_contig13893:542..692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13893 543..692 +
1622815546.32032-CDS-L-elsbetiae_contig13893:1177..12701622815546.32032-CDS-L-elsbetiae_contig13893:1177..1270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13893 1178..1270 +
1691682951.6767468-CDS-L-elsbetiae_contig13893:1177..12701691682951.6767468-CDS-L-elsbetiae_contig13893:1177..1270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13893 1178..1270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13893.2930.1prot_L-elsbetiae_contig13893.2930.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13893 543..1270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13893.2930.1

>prot_L-elsbetiae_contig13893.2930.1 ID=prot_L-elsbetiae_contig13893.2930.1|Name=mRNA_L-elsbetiae_contig13893.2930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
RYLRLVDKFNEQNVSAFLTAGGAKLMLLHDGRPDDAIRTFFAEVHELYVK
LLMNPFYAYDSPVISPAFDQRVKALARKLL*
back to top

mRNA from alignment at L-elsbetiae_contig13893:543..1270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13893.2930.1 ID=mRNA_L-elsbetiae_contig13893.2930.1|Name=mRNA_L-elsbetiae_contig13893.2930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=728bp|location=Sequence derived from alignment at L-elsbetiae_contig13893:543..1270+ (Laminarionema elsbetiae ELsaHSoW15)
AGATATCTTCGGCTGGTCGACAAATTCAACGAGCAAAACGTGTCGGCATT TTTAACAGCGGGTGGGGCAAAGCTCATGCTGCTGCACGACGGTAGACCGG ATGACGCCATTCGAACTTTCTTCGCCGAAGTGCACGAGCTGTACGTCAAG GTATGTTTGTTTTTAGTTTTTTTCTCTGCTCCCATTATTGGCTTATTCGT CGTCTGTCCCACTGGCCGGCCCCCTTCCTCCACTACGACTAGCTAGACGA CCCAACACACAGGAGGGGAGGGGGGGGGTAGACCTGCTACTGCGGTCCCT CCTGTTGTGTTCTTATCGCGATATGTATGTTCGTACAGTAGGGTCATGTT TGTCGGTTGAGACTCACCCCGCTCTCGGTGCTGTTTCTTCGTCTGGTAGA CAGAACCTGGCAATCGTGTGACAGAACTCTGCTGGTTGAACAGGCGCCAC AGCAGTAGGTCGTACGCGCGTTCGGGCGTGGGCTCCGCATTTTGCGCGAT CTTGCCGTCGCGATGTACACTACCACCCTCGGCCGTATAGGATCCCCGAC AGCAGAGTAGGTAGTGGTGCGTCTGTCCAGCCGCGGAACCAACCCTCGGC GTTGTTGCGTTGTCGCTGCCCTCCGCGCTCCTCAGCTGCTGATGAACCCC TTCTACGCCTACGACTCGCCGGTGATCTCTCCAGCGTTTGACCAACGCGT CAAAGCTTTGGCAAGAAAGTTGTTATAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13893:543..1270+

>mRNA_L-elsbetiae_contig13893.2930.1 ID=mRNA_L-elsbetiae_contig13893.2930.1|Name=mRNA_L-elsbetiae_contig13893.2930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig13893:543..1270+ (Laminarionema elsbetiae ELsaHSoW15)
AGATATCTTCGGCTGGTCGACAAATTCAACGAGCAAAACGTGTCGGCATT
TTTAACAGCGGGTGGGGCAAAGCTCATGCTGCTGCACGACGGTAGACCGG
ATGACGCCATTCGAACTTTCTTCGCCGAAGTGCACGAGCTGTACGTCAAG
AGATATCTTCGGCTGGTCGACAAATTCAACGAGCAAAACGTGTCGGCATT
TTTAACAGCGGGTGGGGCAAAGCTCATGCTGCTGCACGACGGTAGACCGG
ATGACGCCATTCGAACTTTCTTCGCCGAAGTGCACGAGCTGTACGTCAAG
CTGCTGATGAACCCCTTCTACGCCTACGACTCGCCGGTGATCTCTCCAGC
GTTTGACCAACGCGTCAAAGCTTTGGCAAGAAAGTTGTTATAGCTGCTGA
TGAACCCCTTCTACGCCTACGACTCGCCGGTGATCTCTCCAGCGTTTGAC
CAACGCGTCAAAGCTTTGGCAAGAAAGTTGTTATAG
back to top