mRNA_L-elsbetiae_contig13762.2853.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13762.2853.1
Unique NamemRNA_L-elsbetiae_contig13762.2853.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13762.2853.1 vs. uniprot
Match: D7FIL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIL7_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 1.020e-61
Identity = 149/349 (42.69%), Postives = 184/349 (52.72%), Query Frame = 1
Query:    1 LLHAFYKWSCQEFSEPVRPAPAQVVPDLIH-------------------------------------GGVAAAERLLAAQGGTAGGRTERML-------WQKEQD-----ELRARQEKLQXXXXXXXXXXLFLLRQRHWHDPVDSLSYEGALQLY--LKERNLRAHEEAHVSIVHSASWINETNRSLLITAAGDGVVRAWSGVLEAQTDLDGGAADEKMQPPVLVTAYQAVPDITPAVDGDVCMVTEWQQRRGLLSAAGSSPFVRVWDMASEQLWSQWEVHSV--VSALGAAPDVGGGPLGGWVMAAGTTEGEVLLFDARKRGQQTVQRMKGHGGWTVDVFFTPVRGAG 888
            +LH+FYKWSC+EFSEPV P PA VVPD++                                      GG AAA  +++  GG+ G      L        Q E+D     E R  QE  +            LL Q H H+PVDSLSYEG   L+     RN +       + + S SWINET+ SLL+TAAGDGVVR W  V+EA        ADE   P  LVTA++A+PD+     G   + T WQQRRGLLSAAG+S  + VWDM SEQ+W QWEV     VSAL A  D   GPLGGW++AAG T+G VLL+DAR+RG   V +M     + VD+FF P  G G
Sbjct:    1 MLHSFYKWSCREFSEPVTPPPAPVVPDVVDLAAPGKKXXXXXXXQQQGGAADFFAGLSPGRGPAAAWGGEAAAVGMMSV-GGSMGNPAMPPLSSSPYFAQQYEEDKQSAHEARKEQELQRQKRELQELRERQLLLQHHRHEPVDSLSYEGGHHLHGSFSNRNRKG------TRMTSVSWINETDISLLLTAAGDGVVRVWGDVMEA-------GADEGRSPD-LVTAFRALPDLEQNPGGPG-LATHWQQRRGLLSAAGASRHLNVWDMGSEQMWKQWEVPEQCNVSALRAPSDNSPGPLGGWMIAAGMTDGNVLLYDARERGVSAVHKMNRLRNYVVDLFF-PEEGTG 332          
BLAST of mRNA_L-elsbetiae_contig13762.2853.1 vs. uniprot
Match: A0A6H5KBF0_9PHAE (Raptor_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF0_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.670e-42
Identity = 95/174 (54.60%), Postives = 114/174 (65.52%), Query Frame = 1
Query:  373 SASWINETNRSLLITAAGDGVVRAWSGVLEAQTDLDGGAADEKMQPPVLVTAYQAVPDITPAVDGDVCMVTEWQQRRGLLSAAGSSPFVRVWDMASEQLWSQWEVHSV--VSALGAAPDVGGGPLGGWVMAAGTTEGEVLLFDARKRGQQTVQRMKGHGGWTVDVFFTPVRGAG 888
            S SWINET+ SLL+TAAGDGVVR W  V+EA        ADE   P  LVTA++A+PD+     G   + T WQQRRGLLSAAG+S  + VWDM SEQ+W QWEV     VSAL A  D   GPLGGW++AAG T+G VLL+DAR+RG   V +M     + VD+FF P  G G
Sbjct: 1800 SVSWINETDNSLLLTAAGDGVVRVWGDVMEA-------GADEGRSPD-LVTAFRALPDLEQD-QGGPGLATHWQQRRGLLSAAGASRHLNVWDMGSEQMWKQWEVPEQCNVSALRAPSDNSPGPLGGWMIAAGMTDGNVLLYDARERGVSAVHKMMRLRNYVVDLFF-PEEGTG 1963          
BLAST of mRNA_L-elsbetiae_contig13762.2853.1 vs. uniprot
Match: A0A1Z5JAI2_FISSO (Regulatory associated protein of mTOR n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAI2_FISSO)

HSP 1 Score: 80.5 bits (197), Expect = 4.000e-13
Identity = 56/166 (33.73%), Postives = 88/166 (53.01%), Query Frame = 1
Query:  367 VHSASWINETN-RSLLITAAGDGVVRAWSGVLEAQTDLDGGAADEKMQPPVLVTAYQAVPDITPAVDGDVCMVTEWQQRRGLLSAAGSSPFVRVWDMASEQLWSQWEVHSV--VSALGAAPDV---GGGPLGGWVMAAGTTEGEVLLFDARKRGQQTVQRM-KGHG 843
            + S  WINE + +S+++  + DG VR W G+++      G  +        LVTA+ A+P   P   G   +V EWQ  +G L  AGSS F+R WD+ SEQ+  + E H+   ++ L +A D        LG  ++ AG ++G + ++D R R  +T Q +  GHG
Sbjct: 1299 ITSCCWINEKSCKSMVLVGSDDGAVRLWGGMIDEIGRPTGTTS--------LVTAFSALPMSLPVNSGSG-LVCEWQSEKGRLITAGSSQFLRSWDVESEQISVELETHTTSHITTLTSAYDPFMSSSSGLGPDIIVAGLSDGALRIYDIRSR--RTAQELHSGHG 1453          
BLAST of mRNA_L-elsbetiae_contig13762.2853.1 vs. uniprot
Match: A0A7S3Q1Z5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q1Z5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.390e-13
Identity = 54/166 (32.53%), Postives = 81/166 (48.80%), Query Frame = 1
Query:  367 VHSASWINETNRSLLITAAGDGVVRAWSGVLEAQTDLDGGAADEKMQPPVLVTAYQAVPDITPAVDGDVCMVTEWQQRRGLLSAAGSSPFVRVWDMASEQLWS---------------QWE-VHSVVSALGAAPDVGGGPLGGWVMAAGTTEGEVLLFDARKRGQQ 816
            + S SWINE NR+ L++   DG VR W  VL   +  D  A  E      L +A+ A+P++ P       ++ EWQQ  G L A G++ F+R WD+ SE+L +                W+ VH+  +A G +       +G  V+  G  +G V +FD R R +Q
Sbjct: 1002 ITSMSWINERNRTKLLSGCDDGSVRIWDKVLTQCSSDDDHAKPE------LASAFYALPELEPGNKRKSGLIAEWQQSEGRLIAGGATKFIRCWDLESEKLTTCIDTNISFDLTAFTTAWDYVHNESAASGFSG------IGPDVLVGGFGDGTVKVFDLRVREKQ 1155          
BLAST of mRNA_L-elsbetiae_contig13762.2853.1 vs. uniprot
Match: E0VU38_PEDHC (Regulatory-associated protein of mTOR, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VU38_PEDHC)

HSP 1 Score: 68.2 bits (165), Expect = 4.880e-9
Identity = 53/184 (28.80%), Postives = 86/184 (46.74%), Query Frame = 1
Query:  340 AHEEAHVSIVHSASWINETNRSLLITAAGDGVVRAWSGVLEAQTDLDGGAADEKMQPPVLVTAYQAVPDITPA---VDGDVCMVTEWQQRRGLLSAAGSSPFVRVWDMASEQLWSQWEVH----SVVSALGAAPDVGGGPLGGWVMAAGTTEGEVLLFDARKRGQQT-VQRMKGHGGWTVDVFF 867
            +++ A  S + +  ++N  + +LL+  + DG VR WS  L  +            + P LVTA+QA+PD+TP+   V+G   +V  WQQ    L  AG +  +R WD  +E+     ++H    S V+++ + P          ++  G  +G V LFD R   Q   V   + H  W V V  
Sbjct: 1003 SNKAAKGSRITAMQFVNVHDVTLLLNGSDDGTVRLWSNYLPREN-----------REPELVTAWQALPDVTPSNRSVNGGAGIVMVWQQESQQLVVAGDTSKIRFWD--AEKELKIVDLHTGTESCVTSISSDPSCSN------LVVVGCGDGSVRLFDRRLSPQDARVMTWREHSAWVVGVHL 1167          
BLAST of mRNA_L-elsbetiae_contig13762.2853.1 vs. uniprot
Match: A0A7M7K117_VARDE (Raptor_N domain-containing protein n=5 Tax=Varroa TaxID=62624 RepID=A0A7M7K117_VARDE)

HSP 1 Score: 60.1 bits (144), Expect = 2.290e-6
Identity = 46/140 (32.86%), Postives = 65/140 (46.43%), Query Frame = 1
Query:  397 NRSLLITAAGDGVVRAWSGVLEAQTDLDGGAADEKMQPPVLVTAYQAVPDITPAVDGDVC--MVTEWQQRRGLLSAAGSSPFVRVWDMASEQ--LWSQWEVHSVVSALGAAPDVGGGPLGGWVMAAGTTEGEVLLFDARK 804
            +R LL TA+ DG VRAW+    A  +    +  E  +P  LVTA+    D         C  ++ +W Q R  L   G    VR+WDMA+E+  L    +  S V  +      GG      ++A GT +G V L+D RK
Sbjct: 1291 DRCLLFTASTDGAVRAWANTYSAYYNQ---SPTESPEPVELVTAFNCALDAAEMQTTLKCAGILLDWDQARNQLVTCGDLKVVRIWDMAAERRLLDITLDADSPVRCVSLDRTAGGS-----LLAIGTIDGYVKLYDRRK 1422          
BLAST of mRNA_L-elsbetiae_contig13762.2853.1 vs. uniprot
Match: A0A1E3QFU2_LIPST (Raptor_N domain-containing protein n=1 Tax=Lipomyces starkeyi NRRL Y-11557 TaxID=675824 RepID=A0A1E3QFU2_LIPST)

HSP 1 Score: 55.1 bits (131), Expect = 9.530e-5
Identity = 42/168 (25.00%), Postives = 76/168 (45.24%), Query Frame = 1
Query:  367 VHSASWINETNRSLLITAAGDGVVRAWSGVLEAQTDLDGGAADEKMQPPVLVTAYQAVPDITPAVDGDVCMVTEWQQRRGLLSAAGSSPFVRVWDMASEQLWSQWEVHSVVSALGAAPDVGGGPLGGWVMAAGTTEGEVLLFDARKRGQQTVQRM-KGHGGWTVDVFF 867
            +  A  INE +  LL+T AGDGV+R +    E++  ++            L  A++A+ D+ P+ +    +V +WQQ RG +   G    +R+WD   E   +     S         D     + G +  AG  +G + ++D R   ++ + ++ K H  W ++V  
Sbjct: 1088 ITEAKLINEDDVPLLMTGAGDGVIRLYRNY-ESEDRIE------------LACAWRALTDMLPS-NKSSGLVADWQQGRGTMLVGGDVKVIRLWDAPRELCMADIPARSGSPITSLTSD----QVAGHIFIAGFGDGALRVYDRRIDPREAMVKVWKYHKSWVLNVHM 1237          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13762.2853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FIL7_ECTSI1.020e-6142.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBF0_9PHAE1.670e-4254.60Raptor_N domain-containing protein n=1 Tax=Ectocar... [more]
A0A1Z5JAI2_FISSO4.000e-1333.73Regulatory associated protein of mTOR n=2 Tax=Fist... [more]
A0A7S3Q1Z5_9STRA9.390e-1332.53Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
E0VU38_PEDHC4.880e-928.80Regulatory-associated protein of mTOR, putative n=... [more]
A0A7M7K117_VARDE2.290e-632.86Raptor_N domain-containing protein n=5 Tax=Varroa ... [more]
A0A1E3QFU2_LIPST9.530e-525.00Raptor_N domain-containing protein n=1 Tax=Lipomyc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13762contigL-elsbetiae_contig13762:605..4594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue1.3e-53
Seed eggNOG ortholog2880.D7FIL7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TOR signaling
EggNOG OGsKOG1517@1,KOG1517@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size894
Cds size894
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13762.2853.1prot_L-elsbetiae_contig13762.2853.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13762 605..4594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.7069278-CDS-L-elsbetiae_contig13762:604..9691622815537.7069278-CDS-L-elsbetiae_contig13762:604..969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13762 605..969 +
1691682947.0847719-CDS-L-elsbetiae_contig13762:604..9691691682947.0847719-CDS-L-elsbetiae_contig13762:604..969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13762 605..969 +
1622815537.7227314-CDS-L-elsbetiae_contig13762:2561..27391622815537.7227314-CDS-L-elsbetiae_contig13762:2561..2739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13762 2562..2739 +
1691682947.1088278-CDS-L-elsbetiae_contig13762:2561..27391691682947.1088278-CDS-L-elsbetiae_contig13762:2561..2739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13762 2562..2739 +
1622815537.7347903-CDS-L-elsbetiae_contig13762:3483..36281622815537.7347903-CDS-L-elsbetiae_contig13762:3483..3628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13762 3484..3628 +
1691682947.119664-CDS-L-elsbetiae_contig13762:3483..36281691682947.119664-CDS-L-elsbetiae_contig13762:3483..3628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13762 3484..3628 +
1622815537.7450814-CDS-L-elsbetiae_contig13762:4388..45941622815537.7450814-CDS-L-elsbetiae_contig13762:4388..4594Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13762 4389..4594 +
1691682947.132055-CDS-L-elsbetiae_contig13762:4388..45941691682947.132055-CDS-L-elsbetiae_contig13762:4388..4594Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13762 4389..4594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13762.2853.1

>prot_L-elsbetiae_contig13762.2853.1 ID=prot_L-elsbetiae_contig13762.2853.1|Name=mRNA_L-elsbetiae_contig13762.2853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=298bp
LLHAFYKWSCQEFSEPVRPAPAQVVPDLIHGGVAAAERLLAAQGGTAGGR
TERMLWQKEQDELRARQEKLQLQQQQQQQEQLFLLRQRHWHDPVDSLSYE
GALQLYLKERNLRAHEEAHVSIVHSASWINETNRSLLITAAGDGVVRAWS
GVLEAQTDLDGGAADEKMQPPVLVTAYQAVPDITPAVDGDVCMVTEWQQR
RGLLSAAGSSPFVRVWDMASEQLWSQWEVHSVVSALGAAPDVGGGPLGGW
VMAAGTTEGEVLLFDARKRGQQTVQRMKGHGGWTVDVFFTPVRGAGG*
back to top

mRNA from alignment at L-elsbetiae_contig13762:605..4594+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13762.2853.1 ID=mRNA_L-elsbetiae_contig13762.2853.1|Name=mRNA_L-elsbetiae_contig13762.2853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3990bp|location=Sequence derived from alignment at L-elsbetiae_contig13762:605..4594+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTTGCACGCCTTCTACAAGTGGAGCTGCCAGGAGTTCAGCGAGCCTGT GCGCCCGGCCCCGGCGCAGGTCGTCCCCGACTTGATCCACGGGGGGGTCG CGGCGGCCGAGCGGCTTTTGGCCGCGCAGGGGGGCACCGCGGGCGGCCGA ACCGAGAGGATGCTGTGGCAGAAGGAACAAGATGAGCTAAGAGCCCGGCA GGAGAAGCTCCAGCTCCAGCAGCAGCAGCAGCAGCAGGAGCAGCTGTTTC TGCTGCGGCAGCGGCACTGGCACGACCCCGTGGACTCGCTGAGCTACGAG GGGGCCCTCCAGCTGTACCTCAAGGAAAGGAACTTGCGCGCCCACGAGGA GGCTCATGTGAGTATGTAGAGCCGGGGTGGGCAGAGCGGACCATGCTGGA GGGGTGTGAGGAGCTGGAGAGACCAGTGCAGGCGTATTCACGGCGCTGTG CCCGATGTCGAAAAAGGATGCCGAACGATGTAGGATATGTAGCTGTCGAG TGAGATGCGCTAAAATTAAAGTTGGGCCTGCGGGAAAGTGCACGATGAAG AGAAAAAAGGGGGTTCCGTACAGTTTGCTTTTGTGGATTGCCGGTGTCAT GACGGTGTCGGTGGGATCATGCCATGAAACCCCGCGTCCGATCATTCCAC CGACCGATACTGATGCTGCGTCCCAACCCCATACCCCCCCCGCTAAAAAA ATCAGGCGCTCGTGAAGGGGTAGGAGGCACTCAGGGCGCCGCCGGTCCGC CAGGAGGCGCTCTTGACACGCGCGCCCCGCTTCGATATGAAGAGCGAGAA GCCGCCGAAGCGCAACCTGGGCCTGGCCGTGAAGTCGGTCGTGGACCTCG GGTGGAAGCTGCAGCGGCACACGACCTCGCTGGCGTTCCACCCGTACGAG CCGCTGCTGGTGGCGGCGGACTGCCAGGACGGCATCTCTGTCTGCAGCTT CGAGATGGATGTCAAGTGAGTCCTCAATCAGTCACTTGAGTCTGGTGACG AGAGGAGAGAAGACAGGCGTAGGGGTACGTACATACATATATAGCCTGCA CATAAACGAAGTTTGCATGTAAATTATGCTCGATACACCTTCTGAGCAGA GCGTAATACCACTGCAGATTCTCCCTGCCGCAAAAAAATAAAAAAATCAC AAAAAATACATACGCCCCCCCCCCTTGATGCTCTGTACTCTGTACTTCCT TTGTATTCACCCCTTGGGATCCTCTTCAAGAGGGAACGATGCGATGGATC GCATGTGGCGCGGTCGGTGGTTGGGGGTAGGAGTGACGGTCGCGTGTCGT GGCGTGGGGCTGGTTGTTTGGCGTGCAAGCGGCCTGGGGTTAGAATTTAA ATGAGGGGTAACATCGATCGATCAAACAGATGTATGTAAATCTCTGTGCT TGAGTTGGGAGTGTGCCTCGCGTGTGTGTTGTTGGCTGCGCAGACGGGGT TCGGGCAAGGGCTGTTTTTTGACGCACTGAAAACCACTTGCTTTCCCTCC CCCATGCCCGCCAGCCGAGATGTGATGCACGTTAGCTCAGGTTTTCCCGC AAACTTTAGTCTTGTCTAGCCTAGTCTAGCCTAGTTAGTCACAACGTAAA CCGAGTAGCCGGTAGAAACTGGATCCCCTTCCCCCCCCCCCCCCCCCCAC TCCTTCCTACATTGCACCCACACGGCGGTGCCTCCAATCGTTTTTCTGAC TCTCGTATGTATGTGTGTGCCTCCTCTGACTCTCCGCTGCGACCCTTCGT CCGTTCCGTTCCGTTCCGTTCCGTTCCGTTCCGTTCCGTTCCGCTCCTCC CCGCTCCGCTCCATTCCCACCCATGAAAATGGCCGCCCGCTTTGTCTGTC CGTCGAACAAAACAATGATGATCATCTCACCGCCAAAAAATCAGCCACCA ACCATCGAACGCGAAGAGGTGCGGAAGCTTCTCGAACGGCAACCGGCCCG GGACCAGAGTACACTCCGCCTCCTGGATCAACGAGACAAACAGGTCCCTC CTTATCACCGCCGCGGGCGACGGCGTCGTCAGGGCCTGGAGCGGCGTCTT GGAGGCACAGACCGACCTCGATGGGGGGGCAGCGGATGAGAAGATGCAGC CGCCGGTGCTGGTGACCGCGTACCAGGCGGTTCCGGTGAGGGAGGGGGCT GTGATGGGGTGTCGGAGTCCATATGTAAAAATATGTGTACAAAGTACATC ATTAGTAGTACATGCATATGTACAACGTGCAAAGGACCTTTGTGGTTTTA TAAGTGAGCGTCACTTGTGGTGGCGTTTTTTGTTTTTTTGTGTTGGACGT GTCTGTCCCGTTTGATTGAGTTTGGTTTGACTAATTGTGTCGCGCCTTGT CAGCCGTGGCTATTTCCTTCGCCGGGTCCTGGGGTCCTGGGTCCTGATGT GTCGATGTCGTCGGTATCTTGAAAGTTACTTGCGTTTTTGTGTTTTGTGC GTTCGTGTGCGTGTGTTGTGTTGTGTTGTGTTGCGTTTTTGTTTGGTCGA GAGAGAGAGAGAGAGAGAGAAAGACCAGTTGGGCTGCCTGCTGCTTGTTG AAAGTAACTTGCTTTTTGTGTTTTGTGCGCTCGTGTGCGTGTATTGTGTG TTGTGTTCGTTTGGTCGAGAGAGAGAGGAAGAGAGCAAGAGACCGCCTGG GCTGACCTGTTGCTTGTTGCTTGCTTTTGGGGTGTATGATCGCCGTCCGC CTGGCCGCTCTCGATAACCGGTCATGGCACATTTTAACATTTCAACACCG ATCCAACCCAACGATATTTGTTTCTGATGTTGCTAGTCGAGACCACCACG CGGCGAGTTCCCCTCCCCCCCCCCGCAATCACGCACCAACATGCATCTTT TGTATTTTTTCCACCTTTTACCGCCTCAGGACATAACACCAGCCGTCGAC GGGGATGTGTGTATGGTGACGGAATGGCAGCAGCGGCGGGGCCTGCTGTC GGCCGCGGGGAGTAGCCCATTTGTGAGGGTGTGGGACATGGCAAGCGAGC AGCTGTGGAGTCAGTGGGAGGTGCGTAGGCGAGATCCACGGCTGCCACAT ACGAACTTGTGTACCCTAAAGCGGGGGTATTTTTTTTCGCTGTGTGGATT TCCGATGCCATGCCACAGAAAGGAGTGGCGTGGTTCATACAGGAGGTACG GTAGGCACCACTTTCTTTCTGCCCAGGGGAGGAAAGGATCGACAATCGGG AAGGGAAAAGTGAGGGAGTTCCACCGGAATGCGATGAGAAAAGGGCGGGG GGTGGTTGGGAAGGAGGGATGAGACTATGTACCAGGAAGGCTGTCAGCTC CAGACGACCCCTCTTCGCTGATGGTAGGCAAGCAAAAATGGACCCTCCCG GCCTTACCTGTAAGCAGCCGACGAGAGCCCTGTTGTAGAATATGGTTTTT AGAGCATATGTTGGCAGTTTTGTCTACATACATGTACCTTTTGTACGTAC ATACATACATACATACATACATACCCGCACGACCAAAACAGCCTCCCCCT CTGTGTTGTCTCCTTGCCTCTCTTCCCCCCCCCCGCTCTCTTCCCTGTTT CTGTCTCTTCCTCTCCTCTCGTTCCAACTCTCTCCCTTTCGATCGCCACA TTGTTACCGCACCGTGCTGTTACCGTGCGGTGACTAAATACTCGATTCCC CACCCGTCTTGATCGATTCTTCGCCGCCAGCTCAAGTAAAACTCAGCCCC TTCTTCACCCACCCTTCTTTTTTCTTCTTGTGCATGACCCCCCCCCACCC GGGCAGATACCCGAATCCACCGTCTCGCATCAAGACTCGGTTGTGTCCGC TCTCGGCGCGGCGCCGGACGTCGGCGGCGGTCCCCTCGGCGGGTGGGTGA TGGCCGCGGGGACGACAGAGGGGGAGGTGCTGCTCTTCGACGCCCGAAAG AGGGGGCAGCAGACTGTGCAGCGGATGAAGGGCCACGGCGGCTGGACGGT CGACGTCTTCTTTACACCGGTACGGGGGGCGGGGGGGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13762:605..4594+

>mRNA_L-elsbetiae_contig13762.2853.1 ID=mRNA_L-elsbetiae_contig13762.2853.1|Name=mRNA_L-elsbetiae_contig13762.2853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1788bp|location=Sequence derived from alignment at L-elsbetiae_contig13762:605..4594+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTTGCACGCCTTCTACAAGTGGAGCTGCCAGGAGTTCAGCGAGCCTGT
GCGCCCGGCCCCGGCGCAGGTCGTCCCCGACTTGATCCACGGGGGGGTCG
CGGCGGCCGAGCGGCTTTTGGCCGCGCAGGGGGGCACCGCGGGCGGCCGA
ACCGAGAGGATGCTGTGGCAGAAGGAACAAGATGAGCTAAGAGCCCGGCA
GGAGAAGCTCCAGCTCCAGCAGCAGCAGCAGCAGCAGGAGCAGCTGTTTC
TGCTGCGGCAGCGGCACTGGCACGACCCCGTGGACTCGCTGAGCTACGAG
GGGGCCCTCCAGCTGTACCTCAAGGAAAGGAACTTGCGCGCCCACGAGGA
GGCTCATGTGAGTATCTCTTGCACGCCTTCTACAAGTGGAGCTGCCAGGA
GTTCAGCGAGCCTGTGCGCCCGGCCCCGGCGCAGGTCGTCCCCGACTTGA
TCCACGGGGGGGTCGCGGCGGCCGAGCGGCTTTTGGCCGCGCAGGGGGGC
ACCGCGGGCGGCCGAACCGAGAGGATGCTGTGGCAGAAGGAACAAGATGA
GCTAAGAGCCCGGCAGGAGAAGCTCCAGCTCCAGCAGCAGCAGCAGCAGC
AGGAGCAGCTGTTTCTGCTGCGGCAGCGGCACTGGCACGACCCCGTGGAC
TCGCTGAGCTACGAGGGGGCCCTCCAGCTGTACCTCAAGGAAAGGAACTT
GCGCGCCCACGAGGAGGCTCATGTGAGTATAGTACACTCCGCCTCCTGGA
TCAACGAGACAAACAGGTCCCTCCTTATCACCGCCGCGGGCGACGGCGTC
GTCAGGGCCTGGAGCGGCGTCTTGGAGGCACAGACCGACCTCGATGGGGG
GGCAGCGGATGAGAAGATGCAGCCGCCGGTGCTGGTGACCGCGTACCAGG
CGGTTCCGAGTACACTCCGCCTCCTGGATCAACGAGACAAACAGGTCCCT
CCTTATCACCGCCGCGGGCGACGGCGTCGTCAGGGCCTGGAGCGGCGTCT
TGGAGGCACAGACCGACCTCGATGGGGGGGCAGCGGATGAGAAGATGCAG
CCGCCGGTGCTGGTGACCGCGTACCAGGCGGTTCCGGACATAACACCAGC
CGTCGACGGGGATGTGTGTATGGTGACGGAATGGCAGCAGCGGCGGGGCC
TGCTGTCGGCCGCGGGGAGTAGCCCATTTGTGAGGGTGTGGGACATGGCA
AGCGAGCAGCTGTGGAGTCAGTGGGAGGTGCGACATAACACCAGCCGTCG
ACGGGGATGTGTGTATGGTGACGGAATGGCAGCAGCGGCGGGGCCTGCTG
TCGGCCGCGGGGAGTAGCCCATTTGTGAGGGTGTGGGACATGGCAAGCGA
GCAGCTGTGGAGTCAGTGGGAGGTGCACTCGGTTGTGTCCGCTCTCGGCG
CGGCGCCGGACGTCGGCGGCGGTCCCCTCGGCGGGTGGGTGATGGCCGCG
GGGACGACAGAGGGGGAGGTGCTGCTCTTCGACGCCCGAAAGAGGGGGCA
GCAGACTGTGCAGCGGATGAAGGGCCACGGCGGCTGGACGGTCGACGTCT
TCTTTACACCGGTACGGGGGGCGGGGGGGTGAACTCGGTTGTGTCCGCTC
TCGGCGCGGCGCCGGACGTCGGCGGCGGTCCCCTCGGCGGGTGGGTGATG
GCCGCGGGGACGACAGAGGGGGAGGTGCTGCTCTTCGACGCCCGAAAGAG
GGGGCAGCAGACTGTGCAGCGGATGAAGGGCCACGGCGGCTGGACGGTCG
ACGTCTTCTTTACACCGGTACGGGGGGCGGGGGGGTGA
back to top