mRNA_L-elsbetiae_contig13760.2851.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13760.2851.1
Unique NamemRNA_L-elsbetiae_contig13760.2851.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13760.2851.1 vs. uniprot
Match: A0A6H5KWB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWB1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.630e-14
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:   52 AISPSCQTLCASLELACNCLMTSSRAGXXXXXXXXXASYGKGEAWLKSVFALLEAEGQPESEGKTSQG 255
            A+SP+C TLCAS++LACNCLM   RA           + G GEAWL++VFALL+A+GQPESEG+   G
Sbjct:  826 AVSPACLTLCASIKLACNCLMAPGRA-----TDVSGGAEGTGEAWLRTVFALLKADGQPESEGEREMG 888
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BLAST of mRNA_L-elsbetiae_contig13760.2851.1 vs. uniprot
Match: D7FVV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV7_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 6.010e-13
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:   52 AISPSCQTLCASLELACNCLMTSSRAGXXXXXXXXXASYGKGEAWLKSVFALLEAEGQPESEGKTSQG 255
            A+SP+C TLCAS++LACNCLM   RA           +  +GEAWL +VFALL+A+GQPES+G+   G
Sbjct:  964 AVSPACLTLCASIKLACNCLMAPGRA-----TDVSGGAEDRGEAWLSTVFALLKADGQPESDGEREMG 1026
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13760.2851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWB1_9PHAE3.630e-1455.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVV7_ECTSI6.010e-1352.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13760contigL-elsbetiae_contig13760:3401..3655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue2.3e-11
Seed eggNOG ortholog2880.D7FVV7
KEGG koko:K11267
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mitotic sister chromatid cohesion
EggNOG OGsKOG1525@1,KOG1525@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.5689974-CDS-L-elsbetiae_contig13760:3400..36551622815537.5689974-CDS-L-elsbetiae_contig13760:3400..3655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13760 3401..3655 +
1691682947.023009-CDS-L-elsbetiae_contig13760:3400..36551691682947.023009-CDS-L-elsbetiae_contig13760:3400..3655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13760 3401..3655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13760.2851.1prot_L-elsbetiae_contig13760.2851.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13760 3401..3655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13760.2851.1

>prot_L-elsbetiae_contig13760.2851.1 ID=prot_L-elsbetiae_contig13760.2851.1|Name=mRNA_L-elsbetiae_contig13760.2851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
GVGGGGGGRKKTAAAGGAISPSCQTLCASLELACNCLMTSSRAGAGGGGG
GGGASYGKGEAWLKSVFALLEAEGQPESEGKTSQG
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mRNA from alignment at L-elsbetiae_contig13760:3401..3655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13760.2851.1 ID=mRNA_L-elsbetiae_contig13760.2851.1|Name=mRNA_L-elsbetiae_contig13760.2851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=255bp|location=Sequence derived from alignment at L-elsbetiae_contig13760:3401..3655+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTTGGCGGTGGCGGTGGCGGCCGCAAGAAGACGGCGGCGGCAGGGGG
AGCGATCTCGCCGTCGTGCCAGACGCTCTGCGCCTCGCTTGAGCTCGCGT
GCAACTGTCTCATGACATCGAGTCGGGCAGGAGCCGGCGGCGGCGGCGGC
GGCGGTGGCGCTTCCTATGGCAAGGGAGAAGCGTGGCTGAAGTCCGTGTT
TGCGCTGCTGGAGGCCGAGGGACAGCCGGAGAGTGAGGGAAAGACGAGCC
AGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13760:3401..3655+

>mRNA_L-elsbetiae_contig13760.2851.1 ID=mRNA_L-elsbetiae_contig13760.2851.1|Name=mRNA_L-elsbetiae_contig13760.2851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig13760:3401..3655+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTTGGCGGTGGCGGTGGCGGCCGCAAGAAGACGGCGGCGGCAGGGGG
AGCGATCTCGCCGTCGTGCCAGACGCTCTGCGCCTCGCTTGAGCTCGCGT
GCAACTGTCTCATGACATCGAGTCGGGCAGGAGCCGGCGGCGGCGGCGGC
GGCGGTGGCGCTTCCTATGGCAAGGGAGAAGCGTGGCTGAAGTCCGTGTT
TGCGCTGCTGGAGGCCGAGGGACAGCCGGAGAGTGAGGGAAAGACGAGCC
AGGGGGGCGTTGGCGGTGGCGGTGGCGGCCGCAAGAAGACGGCGGCGGCA
GGGGGAGCGATCTCGCCGTCGTGCCAGACGCTCTGCGCCTCGCTTGAGCT
CGCGTGCAACTGTCTCATGACATCGAGTCGGGCAGGAGCCGGCGGCGGCG
GCGGCGGCGGTGGCGCTTCCTATGGCAAGGGAGAAGCGTGGCTGAAGTCC
GTGTTTGCGCTGCTGGAGGCCGAGGGACAGCCGGAGAGTGAGGGAAAGAC
GAGCCAGGGG
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