mRNA_L-elsbetiae_contig1375.2844.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1375.2844.1
Unique NamemRNA_L-elsbetiae_contig1375.2844.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1375.2844.1 vs. uniprot
Match: D7FTM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM9_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 2.460e-45
Identity = 93/154 (60.39%), Postives = 118/154 (76.62%), Query Frame = 2 
Query:  671 AIGEGETLGFQRQEERQRERCSPLGCMFRPELTKDGVLAIVSQVLCRPGFTLGPSDERRLLKSVRTGRIDIRTMSRILRWLAGERVTCELRRRGIEFVGPKQATASSPYTTGQGMTQLVKEIIAR-NGAGTRFIVCFSSRFDACSSAIAGVLVD 1129
            A+  GE  G Q   + QR+  SPLG MFRPEL K GV+A+VS++LCRPGFT+GP DERRL +SV +GRID+  MSR+LRWLAG R   EL  RGIEFV P+    + PYT+GQGMT+L++E++AR + AGT F+VCFSSRFDACS+AI G L++
Sbjct:   87 AVPTGEEAGIQ---DSQRDE-SPLGFMFRPELDKSGVVAVVSEILCRPGFTVGPDDERRLKRSVESGRIDVHNMSRLLRWLAGRRAARELSERGIEFVVPR----AQPYTSGQGMTRLMEEVVARGHPAGTNFVVCFSSRFDACSAAIRGRLIN 232
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1375.2844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTM9_ECTSI2.460e-4560.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1375contigL-elsbetiae_contig1375:5540..9542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_008890.1
Exons2
Model size3381
Cds size1296
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1375.2844.1prot_L-elsbetiae_contig1375.2844.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1375 5958..7875 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.8167307-UTR-L-elsbetiae_contig1375:5539..59571622815536.8167307-UTR-L-elsbetiae_contig1375:5539..5957Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1375 5540..5957 +
1691682946.5922918-UTR-L-elsbetiae_contig1375:5539..59571691682946.5922918-UTR-L-elsbetiae_contig1375:5539..5957Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1375 5540..5957 +
1622815536.8574746-UTR-L-elsbetiae_contig1375:7875..95421622815536.8574746-UTR-L-elsbetiae_contig1375:7875..9542Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1375 7876..9542 +
1691682946.6292253-UTR-L-elsbetiae_contig1375:7875..95421691682946.6292253-UTR-L-elsbetiae_contig1375:7875..9542Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1375 7876..9542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.8300383-CDS-L-elsbetiae_contig1375:5957..65721622815536.8300383-CDS-L-elsbetiae_contig1375:5957..6572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1375 5958..6572 +
1691682946.6044817-CDS-L-elsbetiae_contig1375:5957..65721691682946.6044817-CDS-L-elsbetiae_contig1375:5957..6572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1375 5958..6572 +
1622815536.845414-CDS-L-elsbetiae_contig1375:7194..78751622815536.845414-CDS-L-elsbetiae_contig1375:7194..7875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1375 7195..7875 +
1691682946.6126323-CDS-L-elsbetiae_contig1375:7194..78751691682946.6126323-CDS-L-elsbetiae_contig1375:7194..7875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1375 7195..7875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1375.2844.1

>prot_L-elsbetiae_contig1375.2844.1 ID=prot_L-elsbetiae_contig1375.2844.1|Name=mRNA_L-elsbetiae_contig1375.2844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=432bp
MAPCVAIRVPVAGHLWQWGNGAANALNEGGLGRGHQMETSAERGNNSNNS
ALFRLAPRLSPATKVGIAAPETARSKSSTPADAVAIGEGETLGFQRQEER
QRERCSPLGCMFRPELTKDGVLAIVSQVLCRPGFTLGPSDERRLLKSVRT
GRIDIRTMSRILRWLAGERVTCELRRRGIEFVGPKQATASSPYTTGQGMT
QLVKEIIARNGAGTRFIVCFSSRFDACSSAIAGVLVDAASTASGLAFDCS
CPRSGPVAIAGCGGGAISADARTVSTCSSFSDTEDDQDQTAPCSTLISVE
LVPEPRRTAAPKGAGGTLPGARSKFVSGVGANPSGISAGGDRTSTERASD
GGDGGNPGGGVVALLSDEKPKHRLCKGGDGNSGGSRGTAGFGEGGGGRVY
GMPVQEWVEAYGDCDGPMLAAWVFPGHGHHE*
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mRNA from alignment at L-elsbetiae_contig1375:5540..9542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1375.2844.1 ID=mRNA_L-elsbetiae_contig1375.2844.1|Name=mRNA_L-elsbetiae_contig1375.2844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4003bp|location=Sequence derived from alignment at L-elsbetiae_contig1375:5540..9542+ (Laminarionema elsbetiae ELsaHSoW15)
AGACCACCCAGCCGATGCCCCCCCCACACTTCACCAGCCGAGACTCACCG
AGAAAAACATACACTTACGAAGACCGACGGAGGATGGCGACTTAAAAACA
CCGAAGACGTACATAGATTGAAGAAGTTGACAGGGTTCCACGAGAGACGG
AGAGAGTGAGTCCGACATCGAAGAAGAGTCAAGAGAGAGCGAGCGAGCGC
GGAGCACACACAGCGGACGGACCTTCCCCAGCGATGACGGAACACGGGAC
ACCACAGCACTTTGACACCCAGTACAGCGTACCTGCACGTCAGCAGTAGT
GGTAGCAGCGACAGTAGTAGATATCAAGATTACAGCGGGAGTCCGTGGCA
CTGGCTCAGCAGCACTGCGGGAGGAAAAACAGTTAGTTCATCCGCGTCGG
CAGCACCGGCTGACAAGCATGGCGCCTTGCGTCGCTATCCGCGTGCCTGT
CGCGGGACATCTGTGGCAGTGGGGGAATGGTGCTGCGAATGCTCTGAACG
AAGGTGGTCTGGGAAGGGGGCATCAAATGGAAACCTCGGCTGAACGCGGA
AATAATTCCAACAATTCTGCGTTGTTTCGACTGGCGCCGAGGCTGAGCCC
GGCCACAAAAGTGGGAATAGCGGCCCCGGAGACCGCCCGTTCCAAGTCTT
CGACACCAGCGGACGCGGTGGCGATTGGGGAAGGAGAAACGTTGGGCTTC
CAGCGACAGGAGGAGCGGCAGCGGGAGAGATGTTCCCCTCTGGGGTGCAT
GTTCCGGCCGGAGCTCACTAAGGACGGGGTCCTCGCGATCGTGTCCCAAG
TGCTTTGCCGACCGGGCTTCACCCTCGGGCCCAGCGACGAGAGACGGTTG
CTGAAAAGCGTCAGAACCGGGCGGATCGACATCCGTACCATGTCCCGGAT
CCTCCGCTGGCTCGCGGGGGAGCGAGTGACTTGTGAGCTGCGGCGGCGAG
GAATAGAGTTCGTCGGTCCGAAACAAGCGACGGCATCATCGCCGTACACC
ACGGGCCAAGGGATGACGCAACTGGTGAAGGAGGTGAGTCACCGATGTAT
ATTCGTTGCTTGCATAGGATCGCGTTTGTGGCGGGTAACCATGAAAACTC
AAACTACATGCATCTTTCAAAAGTTGAGTACGGTAACTATCCTTCGTGCA
GTCATCCATATATCCATGTACGGCGGGCCGTTTTGTTCCTCGCGTTGTTT
GGCCTCGCTGCATATTTTGGTCACCAAGAAAGCGAAGACGTATGTATGTA
GTCTATGCTCCATCAAGGCACATCGTTTAAAGTGTCAGCAGCCAAACACG
TGTTGCCAAGTGTCAACCCCCTGTTTGTCCCGTGTGCCATCAGCCCCACG
GTGTTGCATAGCACCTCCCATCCCGCTGCCTTCATTTCATACCACGTCGT
CGGTGGAGTAACCCGCCACCTCATCCCATCACCCCGTTCACAACGAGTTC
ACATCAACAACGATTTATCATATTTAATGCGCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCACCCCCCCCCACCCCCCCCACCCCCCCCACCCCCCC
CCCCCCCCTCCCCTCCCCCCCCCCCCCACCACGTCCCCACACCAACCATT
TTTTCTTTTTAATGCCCCCCCCCCCCCCCCCCCCCCTTCCGTCAATCGAA
CGCAGATCATCGCCCGAAACGGCGCCGGAACCCGCTTCATCGTGTGTTTC
TCGTCGAGGTTCGATGCGTGCTCCAGCGCCATCGCCGGAGTGCTGGTCGA
TGCAGCATCCACGGCGTCGGGGCTGGCCTTCGACTGCTCCTGCCCGCGTT
CGGGGCCCGTTGCCATCGCCGGCTGTGGTGGCGGCGCTATCTCCGCAGAT
GCGAGGACGGTGTCGACGTGCTCTTCGTTTTCCGACACGGAAGACGATCA
AGATCAGACAGCACCCTGTTCCACCCTCATCTCTGTAGAGCTCGTACCTG
AACCGAGGCGAACAGCTGCGCCGAAGGGGGCAGGTGGCACGTTGCCTGGT
GCTCGCTCCAAGTTTGTCAGCGGTGTAGGTGCGAACCCCAGCGGCATCAG
CGCTGGTGGCGATAGAACCAGCACGGAACGCGCGAGTGATGGTGGCGATG
GTGGCAATCCGGGTGGCGGCGTCGTGGCGCTCTTGTCGGACGAAAAACCA
AAGCATCGCCTCTGCAAGGGCGGCGACGGTAATAGTGGGGGGAGTCGTGG
GACTGCCGGGTTCGGCGAAGGGGGTGGTGGTCGTGTGTACGGGATGCCAG
TGCAGGAGTGGGTTGAGGCTTACGGGGATTGTGACGGACCAATGCTCGCC
GCGTGGGTTTTCCCGGGACATGGACACCACGAATAAATGCAGAACATCCC
TCTGTCGTCGCTGTTTTGGTATTTTCGGCCTACCATGTTACATATAGCGA
AGTATTTGCCTGTTGTGCGCGTTTCAAGGGGGGGCGCACGGGATGCATCA
CAGATGCCGAGGGCGGAAGCCCGTGAGGATGATCGGCGGACCAGCGAGTG
GCGGCAGGGTAGAGAAAGCTTCATACCAACACCCTCTTGGGTCATCCGCG
GCCTGACGCTAATGCGAAGAAAAGGGATATTCAGTATGCACCGCGAGTAG
TGCAGGCGGGCGCTGTATCATAAATACGGGGATGGCAAGATGTTATATCG
GGCGTTCGGCTTTTGGCTTGACCGTATTGTACTTGTTGAAGCAGACTGTG
TGTGGCGACGGGCGTTTGGTTTTACGCTGTCGTGGAAAACGTGACGAAGG
TGTGTCTACCGTTGTTTGGAGTTTATTGACTTAAAAAGTAATTGTTTCGC
ATGCCACACGATACATACGCTGCGTCTGTGTGTAAATTTGGTGAAGGCGT
TGTTTGTCTGTTTGTTTGCACTTCCGGTTTGTTTCTTGTTCGGTATCTCT
CTCTTGTTGTAACATGTGTGTGGTATAATCAGTGGGGAGGGCTAGATTTG
TTGGCCTGACCGGCGAGAACCCGGCGCGGAACACCCCGGCGTTGTTGGGG
TACCAAGATAGAACCAGGGGGTGTATCCCCCCGGTTGGTGATTTTGGCTT
TTCCAGTTTTGTTTTTACCTGTATTAGAGGGGAGCGGAGGGCTCCAGACT
ATCTGCGTCTGACCTTTTTTTTTATGCTTTGCTGACTGACCCTTCCGGGT
CCACCTTGTATTTTTCAATACACCCTTTTATTGCTGACCCTTCGGGTCCA
CTGTTGTGTATTTTTCAGTACACCCTTTTCAGGGGCAAGTCAAGCCTGCG
ACAAGGGGAATCGACCCCGTCAAGTGTTTTGGATTAGTACGGACGTATGG
AGGTGCTGGGTAGAGAGATCGGAACGGTTTTTAACGTGCATTTTATCACA
ATAATAGCAACGCCAAGGCGTTGGAATTATGCATGTCTTGAGATAGATAC
GGAGAAGAAGTGAAGTTGCCATTGCATGGATGAGCAACCGATGTACATGC
TGTATTAGTCCTTTCGCGTGTTTGTGTTGCATTTTTGCTTGCTGATGGTC
GGTTTGGCTTGGCTTGGCTTGAAAGATTATGATAAAAACGAGGGCATGAA
GTCTCTTTTTTAGTGTTGCGGCGAAGTAACCTTGCGGCTTTTGTCATGTA
TTTTTGATGTTGCCTCGTGCGAATGCTTTTTCGAGGGATTGCTGTTTGTG
CTGTTGGTGAAGAGTTGATGTGTTTGTTGCCTCTTCATGGCGAGGTTACG
GTGATGTTTGCATCGCTGGTGTAAACGGTACAGAGGTAAGATTGGGGTTT
TTGAGAGCCTTTTGTGGGAGATGGGCTGCAGCTACTTCGAGAGAGCAATA
TTCAATGTACATCTTGATTTCGATTTATATAGCTGCGCAGCCCGGCGGAA
GACAGAGCCACTCCAGGACCTGCGGCTTCGCTCTGTGGTATATACATACG
TAGCACCTTTGAAAGAGCCGGAAACTTCATTTCTGCTCGGTGCTGTGCGG
AACCAATTACTGGCAGATCTAAGTCATGGTGCCGACGCAGTGACATTACC
CGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1375:5540..9542+

>mRNA_L-elsbetiae_contig1375.2844.1 ID=mRNA_L-elsbetiae_contig1375.2844.1|Name=mRNA_L-elsbetiae_contig1375.2844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2592bp|location=Sequence derived from alignment at L-elsbetiae_contig1375:5540..9542+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCCTTGCGTCGCTATCCGCGTGCCTGTCGCGGGACATCTGTGGCA
GTGGGGGAATGGTGCTGCGAATGCTCTGAACGAAGGTGGTCTGGGAAGGG
GGCATCAAATGGAAACCTCGGCTGAACGCGGAAATAATTCCAACAATTCT
GCGTTGTTTCGACTGGCGCCGAGGCTGAGCCCGGCCACAAAAGTGGGAAT
AGCGGCCCCGGAGACCGCCCGTTCCAAGTCTTCGACACCAGCGGACGCGG
TGGCGATTGGGGAAGGAGAAACGTTGGGCTTCCAGCGACAGGAGGAGCGG
CAGCGGGAGAGATGTTCCCCTCTGGGGTGCATGTTCCGGCCGGAGCTCAC
TAAGGACGGGGTCCTCGCGATCGTGTCCCAAGTGCTTTGCCGACCGGGCT
TCACCCTCGGGCCCAGCGACGAGAGACGGTTGCTGAAAAGCGTCAGAACC
GGGCGGATCGACATCCGTACCATGTCCCGGATCCTCCGCTGGCTCGCGGG
GGAGCGAGTGACTTGTGAGCTGCGGCGGCGAGGAATAGAGTTCGTCGGTC
CGAAACAAGCGACGGCATCATCGCCGTACACCACGGGCCAAGGGATGACG
CAACTGGTGAAGGAGATGGCGCCTTGCGTCGCTATCCGCGTGCCTGTCGC
GGGACATCTGTGGCAGTGGGGGAATGGTGCTGCGAATGCTCTGAACGAAG
GTGGTCTGGGAAGGGGGCATCAAATGGAAACCTCGGCTGAACGCGGAAAT
AATTCCAACAATTCTGCGTTGTTTCGACTGGCGCCGAGGCTGAGCCCGGC
CACAAAAGTGGGAATAGCGGCCCCGGAGACCGCCCGTTCCAAGTCTTCGA
CACCAGCGGACGCGGTGGCGATTGGGGAAGGAGAAACGTTGGGCTTCCAG
CGACAGGAGGAGCGGCAGCGGGAGAGATGTTCCCCTCTGGGGTGCATGTT
CCGGCCGGAGCTCACTAAGGACGGGGTCCTCGCGATCGTGTCCCAAGTGC
TTTGCCGACCGGGCTTCACCCTCGGGCCCAGCGACGAGAGACGGTTGCTG
AAAAGCGTCAGAACCGGGCGGATCGACATCCGTACCATGTCCCGGATCCT
CCGCTGGCTCGCGGGGGAGCGAGTGACTTGTGAGCTGCGGCGGCGAGGAA
TAGAGTTCGTCGGTCCGAAACAAGCGACGGCATCATCGCCGTACACCACG
GGCCAAGGGATGACGCAACTGGTGAAGGAGATCATCGCCCGAAACGGCGC
CGGAACCCGCTTCATCGTGTGTTTCTCGTCGAGGTTCGATGCGTGCTCCA
GCGCCATCGCCGGAGTGCTGGTCGATGCAGCATCCACGGCGTCGGGGCTG
GCCTTCGACTGCTCCTGCCCGCGTTCGGGGCCCGTTGCCATCGCCGGCTG
TGGTGGCGGCGCTATCTCCGCAGATGCGAGGACGGTGTCGACGTGCTCTT
CGTTTTCCGACACGGAAGACGATCAAGATCAGACAGCACCCTGTTCCACC
CTCATCTCTGTAGAGCTCGTACCTGAACCGAGGCGAACAGCTGCGCCGAA
GGGGGCAGGTGGCACGTTGCCTGGTGCTCGCTCCAAGTTTGTCAGCGGTG
TAGGTGCGAACCCCAGCGGCATCAGCGCTGGTGGCGATAGAACCAGCACG
GAACGCGCGAGTGATGGTGGCGATGGTGGCAATCCGGGTGGCGGCGTCGT
GGCGCTCTTGTCGGACGAAAAACCAAAGCATCGCCTCTGCAAGGGCGGCG
ACGGTAATAGTGGGGGGAGTCGTGGGACTGCCGGGTTCGGCGAAGGGGGT
GGTGGTCGTGTGTACGGGATGCCAGTGCAGGAGTGGGTTGAGGCTTACGG
GGATTGTGACGGACCAATGCTCGCCGCGTGGGTTTTCCCGGGACATGGAC
ACCACGAATAAATCATCGCCCGAAACGGCGCCGGAACCCGCTTCATCGTG
TGTTTCTCGTCGAGGTTCGATGCGTGCTCCAGCGCCATCGCCGGAGTGCT
GGTCGATGCAGCATCCACGGCGTCGGGGCTGGCCTTCGACTGCTCCTGCC
CGCGTTCGGGGCCCGTTGCCATCGCCGGCTGTGGTGGCGGCGCTATCTCC
GCAGATGCGAGGACGGTGTCGACGTGCTCTTCGTTTTCCGACACGGAAGA
CGATCAAGATCAGACAGCACCCTGTTCCACCCTCATCTCTGTAGAGCTCG
TACCTGAACCGAGGCGAACAGCTGCGCCGAAGGGGGCAGGTGGCACGTTG
CCTGGTGCTCGCTCCAAGTTTGTCAGCGGTGTAGGTGCGAACCCCAGCGG
CATCAGCGCTGGTGGCGATAGAACCAGCACGGAACGCGCGAGTGATGGTG
GCGATGGTGGCAATCCGGGTGGCGGCGTCGTGGCGCTCTTGTCGGACGAA
AAACCAAAGCATCGCCTCTGCAAGGGCGGCGACGGTAATAGTGGGGGGAG
TCGTGGGACTGCCGGGTTCGGCGAAGGGGGTGGTGGTCGTGTGTACGGGA
TGCCAGTGCAGGAGTGGGTTGAGGCTTACGGGGATTGTGACGGACCAATG
CTCGCCGCGTGGGTTTTCCCGGGACATGGACACCACGAATAA
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