mRNA_L-elsbetiae_contig13745.2841.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13745.2841.1
Unique NamemRNA_L-elsbetiae_contig13745.2841.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13745.2841.1 vs. uniprot
Match: D7G1M0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M0_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 3.000e-11
Identity = 50/111 (45.05%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:  199 HLVQAGASILSKTAAGFSDNLRDSRGGRGGVIVLTSPD----------SGPLSLTSPRDGLESAMKEGASLSPSSS----EWEEYWDEEAEASYYFNCVTREALWVRPDGF 489
            HLVQAGA+ILS T +G+  ++ DS    G                   SGPLSL        S+ K G+ ++P S+    EW E+WDEE  ASYY+N VT EALWVRPDGF
Sbjct:  166 HLVQAGANILS-TGSGYGLHM-DSNAPLGXXXXXXXXXXXXXXXXXXASGPLSLA------PSSCK-GSDINPPSTPSCKEWGEFWDEEVGASYYYNSVTGEALWVRPDGF 267
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BLAST of mRNA_L-elsbetiae_contig13745.2841.1 vs. uniprot
Match: A0A1V9YWV9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YWV9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.880e-5
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:  352 ESAMKEGASLSPSSSEWEEYWDEEAEASYYFNCVTREALWVRP 480
            ++A+K      P++ EW EYWDE A+ASYYFN  T+EA W RP
Sbjct: 1186 QAALKALEEPEPTTDEWVEYWDENAQASYYFNIRTQEASWTRP 1228
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BLAST of mRNA_L-elsbetiae_contig13745.2841.1 vs. uniprot
Match: A0A024TCD7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TCD7_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 7.980e-5
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:  340 RDGLESAMKEGASLSPSSSEWEEYWDEEAEASYYFNCVTREALWVRP 480
            R   E+A+K+ A    +  EW EYWDE A+ASY+FN  T+EA W RP
Sbjct: 1177 RQKRENALKDAAVEVSTEDEWVEYWDENAQASYFFNIRTQEASWTRP 1223
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13745.2841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1M0_ECTSI3.000e-1145.05WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A1V9YWV9_9STRA5.880e-553.49Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024TCD7_9STRA7.980e-551.06Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13745contigL-elsbetiae_contig13745:3421..4748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-26_000940.1
Exons3
Model size492
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13745.2841.1prot_L-elsbetiae_contig13745.2841.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13745 3421..4748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.6177318-CDS-L-elsbetiae_contig13745:3420..36801622815536.6177318-CDS-L-elsbetiae_contig13745:3420..3680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13745 3421..3680 -
1691682946.4799688-CDS-L-elsbetiae_contig13745:3420..36801691682946.4799688-CDS-L-elsbetiae_contig13745:3420..3680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13745 3421..3680 -
1622815536.62846-CDS-L-elsbetiae_contig13745:3770..38191622815536.62846-CDS-L-elsbetiae_contig13745:3770..3819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13745 3771..3819 -
1691682946.4897573-CDS-L-elsbetiae_contig13745:3770..38191691682946.4897573-CDS-L-elsbetiae_contig13745:3770..3819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13745 3771..3819 -
1622815536.6388547-CDS-L-elsbetiae_contig13745:4565..47481622815536.6388547-CDS-L-elsbetiae_contig13745:4565..4748Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13745 4566..4748 -
1691682946.503821-CDS-L-elsbetiae_contig13745:4565..47481691682946.503821-CDS-L-elsbetiae_contig13745:4565..4748Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13745 4566..4748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13745.2841.1

>prot_L-elsbetiae_contig13745.2841.1 ID=prot_L-elsbetiae_contig13745.2841.1|Name=mRNA_L-elsbetiae_contig13745.2841.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
MPLSAAKPPPPPGPPPPHILEKQRKRKELAALQRAQLQSPNSGGGRVGGG
RGGGGRGVEPPLGDPMHLVQAGASILSKTAAGFSDNLRDSRGGRGGVIVL
TSPDSGPLSLTSPRDGLESAMKEGASLSPSSSEWEEYWDEEAEASYYFNC
VTREALWVRPDGF*
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mRNA from alignment at L-elsbetiae_contig13745:3421..4748-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13745.2841.1 ID=mRNA_L-elsbetiae_contig13745.2841.1|Name=mRNA_L-elsbetiae_contig13745.2841.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1328bp|location=Sequence derived from alignment at L-elsbetiae_contig13745:3421..4748- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCTGAGCGCAGCAAAGCCCCCACCACCCCCTGGTCCTCCGCCCCC
ACACATCTTGGAGAAGCAGCGAAAGAGGAAGGAATTGGCGGCGCTGCAAA
GAGCACAGTTGCAATCGCCAAATTCAGGGGGAGGAAGAGTAGGAGGAGGA
AGAGGAGGAGGAGGGAGAGGAGTAGAACCACCGGTGAGTTGACAACCCAA
AATTACTGAAAGGCACTGCTCGGTCACGAAAGCTGAAATTGAGGCTGAGC
TCTGAAGAGTTGACCTCTACACAGGGGTGGTATTGTAGGGGAGGGGCGGT
GGAACCTTTCGCGATTACTGCTGGTGGTACGTGCGGTAGCACGAAACGCG
GTTGCACCAAACCCGGTCCCATACTTTCTCCCGGGCGTCAATGCGCCTGG
CGGCCATGTTGCAGTTTCTTATCACGAACTCCGCCGCCAGGCGTTCGTAC
CCGTTTTACTTGTTGGCCAACTAGAATATCGAAGCTCATCCCCGAGTTCT
GGCACGCAACGGGATGAAACACTTGTTCACGCCCAGCTCGCAAAATATCG
TAGAGAGAAGGTTGTTGTAAGCCTTGTTAACAAGCGCAACGGCTCAGGGA
GTCAATGCTTGAACCGCAGATACTCTACCAACAATAGTTCGGCGGCTTTC
TCATATATCCACCGGGCATAGTAAAACGCCAAACCAGATAGACGTCTAGA
GTGAAAGACGTTTTACTGAGCATTGAAAACCTTCCTTCTACGTTTCCACC
CCGCCGCCGGGCCATCTAAGTCACTTCCAAACCGCCACCTCGTATGTCCC
TTTCCCTCACCTCCGGGTTTTGTCATTGTCGCTGCAAAGAACTGTGGAAT
GGAGCAACGGAATAATTCAGATTCGAGCTCTTTTAGAGACTCTCCAAGGC
AAAGTAGCACTTCTCTGCGAAATCGACAGTTGGGGGACCCGATGCACCTA
GTTCAAGCCGGTGCTAGCATCCTCAGCAGTTGGAAGGTTGGTAACATCAT
TCCTGAAGGCAATGGGCTGCATTTTAACTGCGCGCGGACCAACGACCCGA
CTGTAAGATGCGACCGAGAGACAGCTGCTGGGTTCAGCGACAACCTGAGG
GACAGCAGAGGAGGGCGGGGCGGGGTGATAGTCCTCACGTCCCCTGACTC
AGGTCCGTTAAGTTTGACATCGCCGCGAGATGGGTTGGAAAGCGCAATGA
AGGAAGGCGCATCTTTGTCGCCATCCTCCTCGGAATGGGAAGAGTATTGG
GACGAGGAGGCGGAGGCTTCTTACTACTTCAACTGTGTCACCAGAGAAGC
GCTTTGGGTCCGTCCGGACGGGTTTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13745:3421..4748-

>mRNA_L-elsbetiae_contig13745.2841.1 ID=mRNA_L-elsbetiae_contig13745.2841.1|Name=mRNA_L-elsbetiae_contig13745.2841.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig13745:3421..4748- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCTGAGCGCAGCAAAGCCCCCACCACCCCCTGGTCCTCCGCCCCC
ACACATCTTGGAGAAGCAGCGAAAGAGGAAGGAATTGGCGGCGCTGCAAA
GAGCACAGTTGCAATCGCCAAATTCAGGGGGAGGAAGAGTAGGAGGAGGA
AGAGGAGGAGGAGGGAGAGGAGTAGAACCACCGATGCCTCTGAGCGCAGC
AAAGCCCCCACCACCCCCTGGTCCTCCGCCCCCACACATCTTGGAGAAGC
AGCGAAAGAGGAAGGAATTGGCGGCGCTGCAAAGAGCACAGTTGCAATCG
CCAAATTCAGGGGGAGGAAGAGTAGGAGGAGGAAGAGGAGGAGGAGGGAG
AGGAGTAGAACCACCGTTGGGGGACCCGATGCACCTAGTTCAAGCCGGTG
CTAGCATCCTCAGCATTGGGGGACCCGATGCACCTAGTTCAAGCCGGTGC
TAGCATCCTCAGCAAGACAGCTGCTGGGTTCAGCGACAACCTGAGGGACA
GCAGAGGAGGGCGGGGCGGGGTGATAGTCCTCACGTCCCCTGACTCAGGT
CCGTTAAGTTTGACATCGCCGCGAGATGGGTTGGAAAGCGCAATGAAGGA
AGGCGCATCTTTGTCGCCATCCTCCTCGGAATGGGAAGAGTATTGGGACG
AGGAGGCGGAGGCTTCTTACTACTTCAACTGTGTCACCAGAGAAGCGCTT
TGGGTCCGTCCGGACGGGTTTTAGAGACAGCTGCTGGGTTCAGCGACAAC
CTGAGGGACAGCAGAGGAGGGCGGGGCGGGGTGATAGTCCTCACGTCCCC
TGACTCAGGTCCGTTAAGTTTGACATCGCCGCGAGATGGGTTGGAAAGCG
CAATGAAGGAAGGCGCATCTTTGTCGCCATCCTCCTCGGAATGGGAAGAG
TATTGGGACGAGGAGGCGGAGGCTTCTTACTACTTCAACTGTGTCACCAG
AGAAGCGCTTTGGGTCCGTCCGGACGGGTTTTAG
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