mRNA_L-elsbetiae_contig1373.2834.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1373.2834.1
Unique NamemRNA_L-elsbetiae_contig1373.2834.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1373.2834.1 vs. uniprot
Match: A0A6H5JNU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNU2_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.200e-40
Identity = 71/83 (85.54%), Postives = 78/83 (93.98%), Query Frame = 1
Query:    1 LKLAVGTSAGSIGLLDVMTYGYATSLRSHTGGVTAAAIDPCEERDEFATVSEDCTLRVWDLVTGAQRYQFSSPTDRPTCVAYA 249
            LKLAVGT+AGSI +LDVMT+GY T+LRSH GGVTAAAIDP EERD+FATVSEDCT+RVWDLV+G QRYQFSSPTDRPTCVAYA
Sbjct:  971 LKLAVGTAAGSISVLDVMTHGYTTALRSHRGGVTAAAIDPSEERDDFATVSEDCTIRVWDLVSGVQRYQFSSPTDRPTCVAYA 1053          
BLAST of mRNA_L-elsbetiae_contig1373.2834.1 vs. uniprot
Match: A0A2J8A864_9CHLO (WD repeat domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A864_9CHLO)

HSP 1 Score: 88.6 bits (218), Expect = 1.660e-18
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 LKLAVGTSAGSIGLLDVMTYGYATSLRSHTGGVTAAAIDPCEERDEFATVSEDCTLRVWDLVTGAQRYQFSSPTDRPTCVAYAP 252
            L++ VGT  G +G L +  + Y+T LRSH G V A A DP   RD+F TVS D TLR+WDL+T  Q Y+F +P +  TC+AY P
Sbjct:  723 LRVVVGTENGVLGCLQIPNHSYSTLLRSHCGPVNAVAADP--SRDQFCTVSSDGTLRIWDLLTHQQLYEFDAPGEAVTCIAYHP 804          
BLAST of mRNA_L-elsbetiae_contig1373.2834.1 vs. uniprot
Match: A0A433U1R0_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433U1R0_ELYCH)

HSP 1 Score: 84.7 bits (208), Expect = 3.690e-17
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 LKLAVGTSAGSIGLLDVMTYGYATSLRSHTGGVTAAAIDPCEERDEFATVSEDCTLRVWDLVTGAQRYQFSSPTDRPTCVAYAP 252
            LK+  GT+ G++G+LDV +  Y+T +RSHTG V+  ++DP  +  + ATVSED T+RVWDL T  Q Y FS+  + P CV Y P
Sbjct:  694 LKILAGTATGNLGILDVPSRQYSTLMRSHTGRVSCFSVDP--QHQQLATVSEDRTIRVWDLNTLQQLYDFSATDECPCCVTYHP 775          
BLAST of mRNA_L-elsbetiae_contig1373.2834.1 vs. uniprot
Match: A0A8B7YGY8_ACAPL (WD repeat-containing protein 90-like isoform X1 n=4 Tax=Valvatida TaxID=41166 RepID=A0A8B7YGY8_ACAPL)

HSP 1 Score: 80.9 bits (198), Expect = 8.400e-16
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 LKLAVGTSAGSIGLLDVMTYGYATSLRSHTGGVTAAAIDPCEERDEFATVSEDCTLRVWDLVTGAQRYQFSSPTDRPTCVAYAP 252
            L++  GT+ G++G+LD+ T  Y T +RSHTG V +A +DP   R + ATVS D T+R+W++ T  Q Y FSSP + P  V + P
Sbjct:  696 LRILAGTATGNLGMLDIATRNYTTLMRSHTGTVLSATLDPA--RRQLATVSADHTIRIWNMDTLQQTYDFSSPQECPCVVTFHP 777          
BLAST of mRNA_L-elsbetiae_contig1373.2834.1 vs. uniprot
Match: F0Y7G3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7G3_AURAN)

HSP 1 Score: 79.3 bits (194), Expect = 2.870e-15
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 LKLAVGTSAGSIGLLDVMTYGYATSLRSHTGGVTAAAIDPCEERDEFATVSEDCTLRVWDLVTGAQRYQFSSPTDRPTCVAYAP 252
            LK+A GTS GS+G+LDV  +GY+T +RSH G V   A    +    FAT  +D T+RVWD + G Q  +F+SP+D P  +A+ P
Sbjct:  230 LKIACGTSRGSLGVLDVSAHGYSTLVRSHVGAVFDVA--HADVGGRFATCGKDGTIRVWDEINGGQLAEFASPSDEPLSLAWRP 311          
BLAST of mRNA_L-elsbetiae_contig1373.2834.1 vs. uniprot
Match: A0A2G8JR11_STIJA (Putative WD repeat-containing protein 90 (Fragment) n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JR11_STIJA)

HSP 1 Score: 79.3 bits (194), Expect = 2.900e-15
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    1 LKLAVGTSAGSIGLLDVMTYGYATSLRSHTGGVTAAAIDPCEERDEFATVSEDCTLRVWDLVTGAQRYQFSSPTDRPTCVAYAP 252
            L +  GTS G++G LDV T  Y T +RSHTG V   ++DP   R + ATVSED T+R+WDL +  Q + F SP + P  V Y P
Sbjct:  671 LNMLAGTSTGNLGYLDVSTRNYTTVMRSHTGRVLCMSLDPV--RRQMATVSEDHTIRLWDLDSLQQLFDFHSPVECPVSVCYHP 752          
BLAST of mRNA_L-elsbetiae_contig1373.2834.1 vs. uniprot
Match: R7UFK9_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UFK9_CAPTE)

HSP 1 Score: 79.3 bits (194), Expect = 2.910e-15
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    4 KLAVGTSAGSIGLLDVMTYGYATSLRSHTGGVTAAAIDPCEERDEFATVSEDCTLRVWDLVTGAQRYQFSSPTDRPTCVAYAP 252
            K+  GT  G++G+LDV T GY T +RSHT  +++ +ID    R   ATV+ED T+RVWDL T  Q + FS+P + P  +AY P
Sbjct:  583 KILAGTCTGNLGILDVSTRGYTTIMRSHTSRISSFSIDTM--RRHVATVAEDHTIRVWDLDTMQQLFDFSAPKECPCAIAYHP 663          
BLAST of mRNA_L-elsbetiae_contig1373.2834.1 vs. uniprot
Match: A0A2C9JFT7_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JFT7_BIOGL)

HSP 1 Score: 79.3 bits (194), Expect = 2.920e-15
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 LKLAVGTSAGSIGLLDVMTYGYATSLRSHTGGVTAAAIDPCEERDEFATVSEDCTLRVWDLVTGAQRYQFSSPTDRPTCVAYAP 252
            LK+  GT++G++G+LDV T  Y T +RSHTG V   A+DP   R + AT S D T+RVWD+ +  Q Y FS+P + P  + Y P
Sbjct:  677 LKIIAGTASGNLGVLDVTTRQYTTLMRSHTGSVLCFALDPV--RKQLATASADNTIRVWDVESLQQLYDFSAPDECPCSINYHP 758          
BLAST of mRNA_L-elsbetiae_contig1373.2834.1 vs. uniprot
Match: A0A7M7NQH9_STRPU (Uncharacterized protein n=3 Tax=Echinacea TaxID=7674 RepID=A0A7M7NQH9_STRPU)

HSP 1 Score: 77.8 bits (190), Expect = 1.010e-14
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    1 LKLAVGTSAGSIGLLDVMTYGYATSLRSHTGGVTAAAIDPCEERDEFATVSEDCTLRVWDLVTGAQRYQFSSPTDRPTCVAYAP 252
            L++  GT  G+ G+LDV +  Y T +RSH   V A A+DP   R + ATVS+D T+R+WDL T  Q Y F +P + P  +AY P
Sbjct:  694 LRILAGTVTGNFGVLDVSSRKYTTLMRSHVSSVLAVALDPL--RRQMATVSDDHTIRIWDLDTLQQLYDFHAPKETPCTIAYHP 775          
BLAST of mRNA_L-elsbetiae_contig1373.2834.1 vs. uniprot
Match: A0A5B8MFG2_9CHLO (WD repeat domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MFG2_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 1.380e-14
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 LKLAVGTSAGSIGLLDVMTYGYATSLRSHTGGVTAAAIDPCEERDEFATVSEDCTLRVWDLVTGAQRYQFSSPTDRPTCVAY 246
            L++AVGTS G+IG LD+ ++ Y T +RSH+  +   A+DP  +R +F+TVS+D ++RVW   T  Q +QF  P  +  C+AY
Sbjct:  594 LQIAVGTSNGTIGYLDIPSHEYKTLIRSHSSVINDVAVDP--QRKQFSTVSDDGSVRVWHFETCEQLFQFDLPDQKVCCIAY 673          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1373.2834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNU2_9PHAE1.200e-4085.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2J8A864_9CHLO1.660e-1850.00WD repeat domain-containing protein n=1 Tax=Tetrab... [more]
A0A433U1R0_ELYCH3.690e-1748.81Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A8B7YGY8_ACAPL8.400e-1645.24WD repeat-containing protein 90-like isoform X1 n=... [more]
F0Y7G3_AURAN2.870e-1546.43Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A2G8JR11_STIJA2.900e-1547.62Putative WD repeat-containing protein 90 (Fragment... [more]
R7UFK9_CAPTE2.910e-1546.99Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A2C9JFT7_BIOGL2.920e-1546.43Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A7M7NQH9_STRPU1.010e-1445.24Uncharacterized protein n=3 Tax=Echinacea TaxID=76... [more]
A0A5B8MFG2_9CHLO1.380e-1443.90WD repeat domain-containing protein n=1 Tax=Chloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1373contigL-elsbetiae_contig1373:6120..7023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue1.2e-34
Seed eggNOG ortholog2880.D8LMS4
Preferred nameWDR90
KEGG koko:K11797,ko:K11798
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG2319@1,KOG0644@2759,KOG3213@1,KOG3213@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons2
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.7181444-CDS-L-elsbetiae_contig1373:6119..62891622815535.7181444-CDS-L-elsbetiae_contig1373:6119..6289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1373 6120..6289 +
1691682946.057499-CDS-L-elsbetiae_contig1373:6119..62891691682946.057499-CDS-L-elsbetiae_contig1373:6119..6289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1373 6120..6289 +
1622815535.7298436-CDS-L-elsbetiae_contig1373:6915..70211622815535.7298436-CDS-L-elsbetiae_contig1373:6915..7021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1373 6916..7021 +
1691682946.0673718-CDS-L-elsbetiae_contig1373:6915..70211691682946.0673718-CDS-L-elsbetiae_contig1373:6915..7021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1373 6916..7021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1373.2834.1prot_L-elsbetiae_contig1373.2834.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1373 6120..7021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1373.2834.1

>prot_L-elsbetiae_contig1373.2834.1 ID=prot_L-elsbetiae_contig1373.2834.1|Name=mRNA_L-elsbetiae_contig1373.2834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
LKLAVGTSAGSIGLLDVMTYGYATSLRSHTGGVTAAAIDPCEERDEFATV
SEDCTLRVWDLVTGAQRYQFSSPTDRPTCVAYAPPTTARGEG
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mRNA from alignment at L-elsbetiae_contig1373:6120..7023+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1373.2834.1 ID=mRNA_L-elsbetiae_contig1373.2834.1|Name=mRNA_L-elsbetiae_contig1373.2834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=904bp|location=Sequence derived from alignment at L-elsbetiae_contig1373:6120..7023+ (Laminarionema elsbetiae ELsaHSoW15)
CTGAAGCTTGCCGTAGGCACGTCGGCGGGTTCGATCGGGCTGCTGGACGT CATGACCTACGGGTACGCAACCTCGCTGAGGTCCCACACGGGAGGGGTGA CGGCCGCTGCGATCGACCCTTGCGAGGAACGGGACGAGTTTGCCACCGTC TCTGAAGACTGCACTTTGAGGTACGGTACTGTACTGCTGTAATTGTATAT ATGCGGAGGGTGTCACCCTCCGAGGAATGCCTTTTTTGATGGTACTCCTG CTCGTACGGGCATATGTGTGCAGCTCTAAAAAAGACTGCGCTATGTAGTA TGTATCGAGGTGCAGGACGTACGTGATTGTTCCGCACTGCTGTGGTGTGT GTGCTACGTTTTGTGGCACGGAGGAGCCCAAGGGCACAGGAATACAACAC AGCGTGCGTACGTAGCCCATAGACGCTTGATGCTCCGTTTTAGTACCGTA GCGCTCTTCTGCGCTTAAAAACAAACAAGAGCCATGATGGCTAAGTAGTG CGTCGTTTTGGACGGGAACGTGTTCTCCTCGCTCGCTTTGCTGAAATGAA AGCACATATGTACATGTTGTGTGGGCCGACGTGTACACCCCCCATCATGT GCAGCAGCAGGACCTGGGTACGTAGTCCTTCCTGTATGACTTGGTCTATG TTTCGTGTGCATACATGCCTACTACTAAATACTTGGCCATTTTTCTTATG TGGCACACGCAAGCTTCCCCACCCTAACCCCCAACCCCCAACCCCAACCC CACCCCGCCCGCGATCGCCGAAACGGCCTGAAAAAAACGCCGACAGGGTG TGGGATCTCGTCACGGGGGCCCAGCGCTATCAGTTCTCCTCCCCCACGGA CCGACCCACCTGCGTCGCCTACGCCCCGCCGACGACCGCTCGCGGAGAGG GGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1373:6120..7023+

>mRNA_L-elsbetiae_contig1373.2834.1 ID=mRNA_L-elsbetiae_contig1373.2834.1|Name=mRNA_L-elsbetiae_contig1373.2834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig1373:6120..7023+ (Laminarionema elsbetiae ELsaHSoW15)
CTGAAGCTTGCCGTAGGCACGTCGGCGGGTTCGATCGGGCTGCTGGACGT
CATGACCTACGGGTACGCAACCTCGCTGAGGTCCCACACGGGAGGGGTGA
CGGCCGCTGCGATCGACCCTTGCGAGGAACGGGACGAGTTTGCCACCGTC
TCTGAAGACTGCACTTTGAGCTGAAGCTTGCCGTAGGCACGTCGGCGGGT
TCGATCGGGCTGCTGGACGTCATGACCTACGGGTACGCAACCTCGCTGAG
GTCCCACACGGGAGGGGTGACGGCCGCTGCGATCGACCCTTGCGAGGAAC
GGGACGAGTTTGCCACCGTCTCTGAAGACTGCACTTTGAGGGTGTGGGAT
CTCGTCACGGGGGCCCAGCGCTATCAGTTCTCCTCCCCCACGGACCGACC
CACCTGCGTCGCCTACGCCCCGCCGACGACCGCTCGCGGAGAGGGGGGTG
TGGGATCTCGTCACGGGGGCCCAGCGCTATCAGTTCTCCTCCCCCACGGA
CCGACCCACCTGCGTCGCCTACGCCCCGCCGACGACCGCTCGCGGAGAGG
GG
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