mRNA_L-elsbetiae_contig1373.2833.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1373.2833.1
Unique NamemRNA_L-elsbetiae_contig1373.2833.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1373.2833.1 vs. uniprot
Match: A0A835YLQ5_9STRA (DUF667 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLQ5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.780e-24
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 2 
Query:   65 AVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLECTDLAFQSSCRGIA 280
            A++ARQ+SDFP+ ++ FSPF   +LVSCGRENVRFWRVRR+ LPACPAVLN++AR  ECTDLAF       A
Sbjct:  641 AILARQLSDFPVARVRFSPFHARQLVSCGRENVRFWRVRRKCLPACPAVLNEYARGAECTDLAFDGGAVSAA 712
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BLAST of mRNA_L-elsbetiae_contig1373.2833.1 vs. uniprot
Match: A0A6H5JNU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNU2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.790e-24
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 2 
Query:  134 RLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLECTDLAFQSSCRGIAG 283
            RLVSCGRENVRFWRVRRRHLPACPAVLNDFARDL CTDLAFQSSC GIAG
Sbjct:  829 RLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAFQSSCSGIAG 878
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BLAST of mRNA_L-elsbetiae_contig1373.2833.1 vs. uniprot
Match: A0A067C9I8_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C9I8_SAPPC)

HSP 1 Score: 94.0 bits (232), Expect = 2.290e-20
Identity = 41/67 (61.19%), Postives = 53/67 (79.10%), Query Frame = 2 
Query:   56 SGLAVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLECTDLAF 256
            S L VVA+Q SDFPI+ + FSP++  RLVSCGREN+RFWR++  HLP CP VL+++ARD   TD+AF
Sbjct:  293 STLPVVAKQTSDFPISNLRFSPYDSDRLVSCGRENIRFWRLKAGHLPGCPVVLHEYARDTHFTDIAF 359
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BLAST of mRNA_L-elsbetiae_contig1373.2833.1 vs. uniprot
Match: T0QSG3_SAPDV (DUF667 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QSG3_SAPDV)

HSP 1 Score: 93.6 bits (231), Expect = 3.140e-20
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 2 
Query:   56 SGLAVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLECTDLAF 256
            S L VVA+Q SDFPI+ + FSP++  RLVSCGREN+RFWRV+  HLP CP VL+++ARD   TD+AF
Sbjct:  470 STLPVVAKQTSDFPISTLRFSPYDSDRLVSCGRENIRFWRVKAGHLPGCPVVLHEYARDALFTDIAF 536
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BLAST of mRNA_L-elsbetiae_contig1373.2833.1 vs. uniprot
Match: A0A7S4E3P8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E3P8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 5.120e-19
Identity = 38/65 (58.46%), Postives = 53/65 (81.54%), Query Frame = 2 
Query:   65 AVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLECTDLAFQ 259
            A++ARQ+SDF ++ + +SP+E  RLVSCGRENVRFWR+R  HLP CPA+L+++ARD + T L F+
Sbjct:  401 AIIARQLSDFDVSAIAWSPYESDRLVSCGRENVRFWRLRHGHLPGCPALLHEYARDAKFTALCFE 465
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BLAST of mRNA_L-elsbetiae_contig1373.2833.1 vs. uniprot
Match: A0A2R5G5K0_9STRA (WD repeat-containing protein 90 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5K0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.340e-18
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 2 
Query:   56 SGLAVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLECTDLAFQS 262
            S +++VARQ S+F I ++ FSP++  +LVSCGREN+RFWR+R RH+   P VLN+FAR    +DLAF+S
Sbjct:  408 SRISLVARQTSEFDIVRIRFSPYDSFQLVSCGRENIRFWRIRNRHMSGTPVVLNEFARKAVFSDLAFES 476
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BLAST of mRNA_L-elsbetiae_contig1373.2833.1 vs. uniprot
Match: F0Y7G3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7G3_AURAN)

HSP 1 Score: 85.1 bits (209), Expect = 2.910e-17
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:   65 AVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLECTDLAFQ 259
            A +++Q+SDF +  + +SP+E+ RLVSCGRENVRFWR++  HLP CP  L+++ARD   TDL F+
Sbjct:   51 ATLSKQLSDFDVVALKWSPYEQDRLVSCGRENVRFWRLKHGHLPGCPGALHEYARDATFTDLCFE 115
[Close]
BLAST of mRNA_L-elsbetiae_contig1373.2833.1 vs. uniprot
Match: A0A1V9YUM5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YUM5_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 7.490e-17
Identity = 35/63 (55.56%), Postives = 51/63 (80.95%), Query Frame = 2 
Query:   68 VVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLECTDLAF 256
            ++A+Q+SDF I+K+ FS ++  RLVSCGREN+RFWR++  HLP CP VL+++AR+   TD+AF
Sbjct:  313 IMAKQLSDFAISKIKFSHYDNDRLVSCGRENIRFWRIKSGHLPGCPIVLHEYARNNTFTDIAF 375
[Close]
BLAST of mRNA_L-elsbetiae_contig1373.2833.1 vs. uniprot
Match: A0A7S2SIF6_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SIF6_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.030e-16
Identity = 35/70 (50.00%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   65 AVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLECTDLAFQSSCRG 274
            A++A+Q S+F I+++ F+P++  +LVSCGREN+RFWRVR  HLP  P +LN++AR+   T +AF+S+  G
Sbjct:  484 ALIAKQTSEFDISELRFAPYDTCQLVSCGRENIRFWRVRNHHLPGSPVILNEYARNEYFTCIAFESNFGG 553
[Close]
BLAST of mRNA_L-elsbetiae_contig1373.2833.1 vs. uniprot
Match: A0A1V9YPV8_9STRA (WD repeat-containing protein 90 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPV8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.400e-16
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 2 
Query:   41 VHGAGSGLAVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLECTDLAF 256
            V        VVA+Q SDF I+++ FS +E  RLVSCGREN+RFWR++  HLP CP VL+++ARD   T +AF
Sbjct:  486 VSSRAPSFPVVAKQTSDFAISRIYFSTYEPERLVSCGRENIRFWRLKGGHLPGCPVVLHEYARDNTFTAVAF 557
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1373.2833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLQ5_9STRA2.780e-2465.28DUF667 domain-containing protein n=1 Tax=Tribonema... [more]
A0A6H5JNU2_9PHAE2.790e-2496.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A067C9I8_SAPPC2.290e-2061.19Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0QSG3_SAPDV3.140e-2062.69DUF667 domain-containing protein n=1 Tax=Saprolegn... [more]
A0A7S4E3P8_9STRA5.120e-1958.46Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A2R5G5K0_9STRA3.340e-1855.07WD repeat-containing protein 90 n=1 Tax=Hondaea fe... [more]
F0Y7G3_AURAN2.910e-1753.85Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1V9YUM5_9STRA7.490e-1755.56Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S2SIF6_9STRA1.030e-1650.00Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A1V9YPV8_9STRA1.400e-1652.78WD repeat-containing protein 90 n=1 Tax=Achlya hyp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1373contigL-elsbetiae_contig1373:3447..4376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.670343-CDS-L-elsbetiae_contig1373:3446..35791622815535.670343-CDS-L-elsbetiae_contig1373:3446..3579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1373 3447..3579 +
1691682946.034029-CDS-L-elsbetiae_contig1373:3446..35791691682946.034029-CDS-L-elsbetiae_contig1373:3446..3579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1373 3447..3579 +
1622815535.684663-CDS-L-elsbetiae_contig1373:4222..43741622815535.684663-CDS-L-elsbetiae_contig1373:4222..4374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1373 4223..4374 +
1691682946.0453851-CDS-L-elsbetiae_contig1373:4222..43741691682946.0453851-CDS-L-elsbetiae_contig1373:4222..4374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1373 4223..4374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1373.2833.1prot_L-elsbetiae_contig1373.2833.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1373 3447..4374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1373.2833.1

>prot_L-elsbetiae_contig1373.2833.1 ID=prot_L-elsbetiae_contig1373.2833.1|Name=mRNA_L-elsbetiae_contig1373.2833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
VGRGPAVYGEGGDCARRRVGAGGGGATDQRLPHHQDALQPVREAAPGVVR
QRERPVLACQAQTPACLPGRPERLRARPRVHRPRLPELLPGYRGS
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mRNA from alignment at L-elsbetiae_contig1373:3447..4376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1373.2833.1 ID=mRNA_L-elsbetiae_contig1373.2833.1|Name=mRNA_L-elsbetiae_contig1373.2833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig1373:3447..4376+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGACGTGGCCCTGCTGTGTACGGCGAGGGCGGGGACTGTGCACGGCG
CCGGGTCGGGGCTGGCGGTGGTGGCGCGACAGATCAGCGACTTCCCCATC
ACCAAGATGCTCTTCAGCCCGTTCGAGAAGCTGGTGCGCCCGTCTTGCTG
CTGTGGTTGTGGGCCGTTACATACTTGCCTTTTGGTGAAGGCATGGTTAC
ATGGTTACTACCTTGTTTCCGTGCATGGGCGGGCAATAAATTGCAGCCCC
CCCGAGGGGCTGCTTGCTGTGTTCTTGCTAAACGGCCACGTTTTTTGGAC
TGTTTTGTTGTTGCTTCTTGGCTTTTCTCCGGTGTTTTTTTCCTTTTCCT
CGTGCCCTTTTTCTTTGCTCCTGCATGACGTTCGCTACAAATGCATACGG
AAAGGTATGCAGTTGCTCCTCTCCTGTCTGTGGTACATCTACGTACAGGA
CATCATGCATATGGTGCTGGTGTGTACATATATAACATGCCTTTTTTAAC
GTTCCATTTTCGTGGATTTTTACGCTCCCCTCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGC
CGCCCCCCCGCCCGCGCGCCGGCGCCCCGCCCCACNNNNNNNNNNTTATG
TAGAATAAATCTTGGTGTTTTGGTTGTTGTTTTTTTTTATTCCCTTTTTT
TTTTTTTCTTTTTTTGTTTTTTTTTTTTCTCCCCCCCCCCCCCCCCCCCC
CCCCCCCATCGCCGCCGGTGCCGCAGCGCCTGGTGTCGTGCGGCAGAGAG
AACGTCCGGTTCTGGCGTGTCAGGCGCAGACACCTGCCTGCCTGCCCGGC
CGTCCTGAACGACTTCGCGCGCGACCTCGAGTGCACCGACCTCGCCTTCC
AGAGCTCCTGCCGGGGTATCGCGGGAGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1373:3447..4376+

>mRNA_L-elsbetiae_contig1373.2833.1 ID=mRNA_L-elsbetiae_contig1373.2833.1|Name=mRNA_L-elsbetiae_contig1373.2833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig1373:3447..4376+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGACGTGGCCCTGCTGTGTACGGCGAGGGCGGGGACTGTGCACGGCG
CCGGGTCGGGGCTGGCGGTGGTGGCGCGACAGATCAGCGACTTCCCCATC
ACCAAGATGCTCTTCAGCCCGTTCGAGAAGCTGGTGGGACGTGGCCCTGC
TGTGTACGGCGAGGGCGGGGACTGTGCACGGCGCCGGGTCGGGGCTGGCG
GTGGTGGCGCGACAGATCAGCGACTTCCCCATCACCAAGATGCTCTTCAG
CCCGTTCGAGAAGCTGCGCCTGGTGTCGTGCGGCAGAGAGAACGTCCGGT
TCTGGCGTGTCAGGCGCAGACACCTGCCTGCCTGCCCGGCCGTCCTGAAC
GACTTCGCGCGCGACCTCGAGTGCACCGACCTCGCCTTCCAGAGCTCCTG
CCGGGGTATCGCGGGAGCCGCCTGGTGTCGTGCGGCAGAGAGAACGTCCG
GTTCTGGCGTGTCAGGCGCAGACACCTGCCTGCCTGCCCGGCCGTCCTGA
ACGACTTCGCGCGCGACCTCGAGTGCACCGACCTCGCCTTCCAGAGCTCC
TGCCGGGGTATCGCGGGAGC
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