mRNA_L-elsbetiae_contig13696.2814.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13696.2814.1
Unique NamemRNA_L-elsbetiae_contig13696.2814.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13696.2814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13696contigL-elsbetiae_contig13696:4215..4542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size329
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.16058-UTR-L-elsbetiae_contig13696:4214..42211622815533.16058-UTR-L-elsbetiae_contig13696:4214..4221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13696 4215..4221 +
1691682944.6746545-UTR-L-elsbetiae_contig13696:4214..42211691682944.6746545-UTR-L-elsbetiae_contig13696:4214..4221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13696 4215..4221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.1801968-CDS-L-elsbetiae_contig13696:4221..45421622815533.1801968-CDS-L-elsbetiae_contig13696:4221..4542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13696 4222..4542 +
1691682944.6853988-CDS-L-elsbetiae_contig13696:4221..45421691682944.6853988-CDS-L-elsbetiae_contig13696:4221..4542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13696 4222..4542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13696.2814.1prot_L-elsbetiae_contig13696.2814.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13696 4222..4542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13696.2814.1

>prot_L-elsbetiae_contig13696.2814.1 ID=prot_L-elsbetiae_contig13696.2814.1|Name=mRNA_L-elsbetiae_contig13696.2814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MAKNRETTTSSSVTNIKKGFAFVQASFFSYSSLHIHGKGFRCITLGNILH
QRHVSVAPASQCPTCIYSVLGTFADPLFPALSKAMGHPLLSRLVVSCKFP
TQPHNHH
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mRNA from alignment at L-elsbetiae_contig13696:4215..4542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13696.2814.1 ID=mRNA_L-elsbetiae_contig13696.2814.1|Name=mRNA_L-elsbetiae_contig13696.2814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=328bp|location=Sequence derived from alignment at L-elsbetiae_contig13696:4215..4542+ (Laminarionema elsbetiae ELsaHSoW15)
GGAAAGGATGGCAAAAAATAGAGAAACGACGACATCGAGTAGTGTTACAA
ACATCAAGAAAGGATTCGCCTTTGTGCAAGCTTCCTTCTTCTCCTACAGT
TCCCTCCACATCCATGGCAAGGGATTTCGCTGCATCACTTTGGGCAATAT
ATTACACCAACGGCACGTTAGTGTAGCACCAGCTAGCCAATGTCCCACAT
GTATCTACAGTGTACTGGGAACTTTTGCTGACCCGTTGTTTCCAGCTCTC
TCCAAAGCTATGGGGCATCCTCTTTTATCACGTTTAGTAGTGTCTTGCAA
ATTTCCCACTCAACCACACAATCATCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13696:4215..4542+

>mRNA_L-elsbetiae_contig13696.2814.1 ID=mRNA_L-elsbetiae_contig13696.2814.1|Name=mRNA_L-elsbetiae_contig13696.2814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig13696:4215..4542+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAAAAAATAGAGAAACGACGACATCGAGTAGTGTTACAAACATCAA
GAAAGGATTCGCCTTTGTGCAAGCTTCCTTCTTCTCCTACAGTTCCCTCC
ACATCCATGGCAAGGGATTTCGCTGCATCACTTTGGGCAATATATTACAC
CAACGGCACGTTAGTGTAGCACCAGCTAGCCAATGTCCCACATGTATCTA
CAGTGTACTGGGAACTTTTGCTGACCCGTTGTTTCCAGCTCTCTCCAAAG
CTATGGGGCATCCTCTTTTATCACGTTTAGTAGTGTCTTGCAAATTTCCC
ACTCAACCACACAATCATCACATGGCAAAAAATAGAGAAACGACGACATC
GAGTAGTGTTACAAACATCAAGAAAGGATTCGCCTTTGTGCAAGCTTCCT
TCTTCTCCTACAGTTCCCTCCACATCCATGGCAAGGGATTTCGCTGCATC
ACTTTGGGCAATATATTACACCAACGGCACGTTAGTGTAGCACCAGCTAG
CCAATGTCCCACATGTATCTACAGTGTACTGGGAACTTTTGCTGACCCGT
TGTTTCCAGCTCTCTCCAAAGCTATGGGGCATCCTCTTTTATCACGTTTA
GTAGTGTCTTGCAAATTTCCCACTCAACCACACAATCATCAC
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