mRNA_L-elsbetiae_contig1369.2806.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1369.2806.1
Unique NamemRNA_L-elsbetiae_contig1369.2806.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1369.2806.1 vs. uniprot
Match: PSBA_ECTSI (Photosystem II protein D1 n=1129 Tax=Eukaryota TaxID=2759 RepID=PSBA_ECTSI)

HSP 1 Score: 699 bits (1805), Expect = 3.730e-254
Identity = 342/360 (95.00%), Postives = 350/360 (97.22%), Query Frame = 1
Query:    1 MVATLERSESITLWERFASWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLIGVACYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSELESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSIVG 1080
            MVATLER E    W  FA+WITSTENRLYIGWFGCLMIPTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIG+HFYPIWEAAS++EWLYNGGPYQLIV HFLIGVAC+MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILM PFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSE+ESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLT+LGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPS+VG
Sbjct:    1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMRPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 360          
BLAST of mRNA_L-elsbetiae_contig1369.2806.1 vs. uniprot
Match: A0A1N7TJI8_9PHAE (Photosystem II protein D1 n=412 Tax=Eukaryota TaxID=2759 RepID=A0A1N7TJI8_9PHAE)

HSP 1 Score: 698 bits (1801), Expect = 1.520e-253
Identity = 338/360 (93.89%), Postives = 349/360 (96.94%), Query Frame = 1
Query:    1 MVATLERSESITLWERFASWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLIGVACYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSELESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSIVG 1080
            MVATLER E    W  FA+WITSTENRLYIGWFGCLMIPTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIG+HFYPIWEA S++EWLYNGGPYQL+V HFLIGVAC+MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSE+ESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPV+ IWLTSLG+STMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNE+LPVA+SAPSIVG
Sbjct:    1 MVATLERREEKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEALSIEEWLYNGGPYQLVVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVIAIWLTSLGISTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEVLPVAVSAPSIVG 360          
BLAST of mRNA_L-elsbetiae_contig1369.2806.1 vs. uniprot
Match: PSBA_PHATC (Photosystem II protein D1 n=590 Tax=root TaxID=1 RepID=PSBA_PHATC)

HSP 1 Score: 693 bits (1789), Expect = 1.020e-251
Identity = 333/360 (92.50%), Postives = 349/360 (96.94%), Query Frame = 1
Query:    1 MVATLERSESITLWERFASWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLIGVACYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSELESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSIVG 1080
            M ATLER +S++LWERF  WITSTENRLYIGWFGCLM PTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNII+GAVIPSSNAIG+HFYPIWEAASVDEWLYNGGPYQLIVLHFL+GVA YMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLT++GVSTMAFNLNGFNFNQSVVDS+GRVINTWADIINRADLGMEVMHERNAHNFPLDLAS E+LPVA++AP++ G
Sbjct:    1 MTATLERRQSVSLWERFCGWITSTENRLYIGWFGCLMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIITGAVIPSSNAIGIHFYPIWEAASVDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESTNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWLTAMGVSTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEVLPVALTAPAVNG 360          
BLAST of mRNA_L-elsbetiae_contig1369.2806.1 vs. uniprot
Match: A0A023JEK8_9STRA (Photosystem II protein D1 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A023JEK8_9STRA)

HSP 1 Score: 683 bits (1762), Expect = 1.330e-247
Identity = 326/360 (90.56%), Postives = 346/360 (96.11%), Query Frame = 1
Query:    1 MVATLERSESITLWERFASWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLIGVACYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSELESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSIVG 1080
            M ATLER ES++LWERF  WITSTENRLYIGWFGC+M PTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAV+PSSNAIG+H YPIWEAAS+DEWLYNGGPYQLIVLHF IGV  YMGREWELSYRLGMRPWIFVAFSAPVAAA+AVF+VYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES ++GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLT++G+STMAFNLNGFNFNQSVVDS+GRVINTWADIINRADLGMEVMHERNAHNFPLDLAS E+LPVA++AP++ G
Sbjct:    1 MTATLERRESVSLWERFCGWITSTENRLYIGWFGCVMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGIHLYPIWEAASIDEWLYNGGPYQLIVLHFFIGVCTYMGREWELSYRLGMRPWIFVAFSAPVAAAAAVFVVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESPDFGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWLTAMGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEVLPVALTAPAVNG 360          
BLAST of mRNA_L-elsbetiae_contig1369.2806.1 vs. uniprot
Match: A0A7S2RD40_9STRA (Photosystem II protein D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RD40_9STRA)

HSP 1 Score: 682 bits (1759), Expect = 5.990e-247
Identity = 327/360 (90.83%), Postives = 347/360 (96.39%), Query Frame = 1
Query:    1 MVATLERSESITLWERFASWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLIGVACYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSELESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSIVG 1080
            M ATLER ESI+LWERF SWITSTENRLYIGWFG +MIPTLLTATSC+II FIAAPPVDIDGIREPVAGSL+YGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFL+GVA YMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET++ ES N GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPV+GIW+T++G+STMAFNLNGFNFNQSVVDSEGRVINTWADI+NRADLG+EVMHERNAHNFPLDLA+ E+ PVA+SAP++ G
Sbjct:   13 MTATLERRESISLWERFCSWITSTENRLYIGWFGVVMIPTLLTATSCFIIGFIAAPPVDIDGIREPVAGSLMYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTDSESTNNGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVLGIWITAMGISTMAFNLNGFNFNQSVVDSEGRVINTWADILNRADLGIEVMHERNAHNFPLDLAAGEVFPVAVSAPAVNG 372          
BLAST of mRNA_L-elsbetiae_contig1369.2806.1 vs. uniprot
Match: A0A451FLR3_9STRA (Photosystem II protein D1 n=179 Tax=Eukaryota TaxID=2759 RepID=A0A451FLR3_9STRA)

HSP 1 Score: 671 bits (1731), Expect = 7.080e-243
Identity = 320/358 (89.39%), Postives = 342/358 (95.53%), Query Frame = 1
Query:    1 MVATLERSESITLWERFASWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLIGVACYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSELESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSI 1074
            M ATLER E  +LWERF SWITSTENRLYIGWFG LMIP LLTATSC+II FIAAPPVDIDGIREPVAGSLLYGNNIISGA++PSSNAIG+HFYPIWEAAS+DEWLYNGGPYQLIV HFL+GVAC+MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET +  S NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLT+LG+STMAFNLNGFNFNQSVVDS+GRVINTWADI+NRA+LG+EVMHERNAHNFPLDLA + +LPVA++AP++
Sbjct:    1 MTATLERREGTSLWERFCSWITSTENRLYIGWFGVLMIPLLLTATSCFIIGFIAAPPVDIDGIREPVAGSLLYGNNIISGAIVPSSNAIGIHFYPIWEAASLDEWLYNGGPYQLIVFHFLLGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETEDGVSANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAIWPVVGIWLTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGIEVMHERNAHNFPLDLAVSNVLPVALNAPAV 358          
BLAST of mRNA_L-elsbetiae_contig1369.2806.1 vs. uniprot
Match: A0A3G2R049_9STRA (Photosystem II protein D1 n=23 Tax=cellular organisms TaxID=131567 RepID=A0A3G2R049_9STRA)

HSP 1 Score: 662 bits (1708), Expect = 1.680e-239
Identity = 318/360 (88.33%), Postives = 342/360 (95.00%), Query Frame = 1
Query:    1 MVATLERSESITLWERFASWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLIGVACYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSELESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSIVG 1080
            M ATLER ES+ +WERF SWITS ENRLYIGWFG +MIPTLLTAT+C+IIAFIAAPPVDIDGIREPVAGSL+YGNNII+GA+IPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFL GVACY+GREWELS+RLGMRPWIFVAFSAPVAAA+AVFL+YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSR+LHFFLAAWPVVGIWLT+LG+STMAFNLNGFNFNQS+VDS+GRVI+TWADI+NRA+LGMEVMHERNAHNFPLDLA        ++AP IVG
Sbjct:    1 MTATLERYESLNIWERFCSWITSLENRLYIGWFGVVMIPTLLTATTCFIIAFIAAPPVDIDGIREPVAGSLMYGNNIITGAIIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLTGVACYLGREWELSFRLGMRPWIFVAFSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETAEGESTNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWLTALGISTMAFNLNGFNFNQSIVDSQGRVISTWADILNRANLGMEVMHERNAHNFPLDLA--------VTAPVIVG 352          
BLAST of mRNA_L-elsbetiae_contig1369.2806.1 vs. uniprot
Match: PSBA_CYAM1 (Photosystem II protein D1 n=18 Tax=Eukaryota TaxID=2759 RepID=PSBA_CYAM1)

HSP 1 Score: 660 bits (1702), Expect = 1.860e-238
Identity = 315/358 (87.99%), Postives = 341/358 (95.25%), Query Frame = 1
Query:    1 MVATLERSESITLWERFASWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLIGVACYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSELESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSI 1074
            M ATL+R  S  LWERF +WITSTENRLYIGWFG LMIP LLTAT  +IIAF+AAPPVDIDGIREPV+GSL YGNNII+GAV+P+SNAIG+HFYPIWEAASVDEWLYNGGPYQLIVLHFLIGVA YMGREWELSYRLGMRPWI VAFSAPVAAA+AVFL+YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGG+LFSAMHGSLVTSSLIRETSE ES+N GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSR+LHFFL AWPVVGIWLT++G+STMAFNLNGFNFNQSVVDSEGRVINTWADI+NRA+LG+EVMHERNAHNFPLDLASN ++PVA++APS+
Sbjct:    1 MTATLQRRASANLWERFCAWITSTENRLYIGWFGVLMIPCLLTATCVFIIAFVAAPPVDIDGIREPVSGSLFYGNNIITGAVVPTSNAIGLHFYPIWEAASVDEWLYNGGPYQLIVLHFLIGVASYMGREWELSYRLGMRPWICVAFSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGALFSAMHGSLVTSSLIRETSENESLNNGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVVGIWLTAIGISTMAFNLNGFNFNQSVVDSEGRVINTWADILNRANLGIEVMHERNAHNFPLDLASNSVVPVALTAPSV 358          
BLAST of mRNA_L-elsbetiae_contig1369.2806.1 vs. uniprot
Match: PSBA_EMIHU (Photosystem II protein D1 n=71 Tax=root TaxID=1 RepID=PSBA_EMIHU)

HSP 1 Score: 656 bits (1692), Expect = 6.210e-237
Identity = 312/360 (86.67%), Postives = 336/360 (93.33%), Query Frame = 1
Query:    1 MVATLERSESITLWERFASWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLIGVACYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSELESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSIVG 1080
            M  TLER ES + WE+F +WITSTENRLYIGWFGCLM PTLL+A S YIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAV+PSSNAIGVHFYPIWEAAS+DEWLYNGG YQL+VLHF IGV  Y+GREWELSYRLGMRPWI VAFSAPVAAA+AVF++YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHM GVAGVFGGSLFSAMHGSLVTSSLIRET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFL AWPVVGIW T++GV+TMAFNLNGFNFNQSVVDS+GRVINTWADI+NR++LGMEVMHERNAHNFPLDLA+ E LPVA+ AP++  
Sbjct:    1 MTTTLERRESASFWEQFCAWITSTENRLYIGWFGCLMFPTLLSAISAYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGVHFYPIWEAASIDEWLYNGGTYQLVVLHFFIGVCAYIGREWELSYRLGMRPWICVAFSAPVAAAAAVFVIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGAWPVVGIWFTAMGVATMAFNLNGFNFNQSVVDSQGRVINTWADILNRSNLGMEVMHERNAHNFPLDLAAGESLPVALVAPAVAA 360          
BLAST of mRNA_L-elsbetiae_contig1369.2806.1 vs. uniprot
Match: A0A0B5W3P8_9FLOR (Photosystem II protein D1 n=23 Tax=Ceramiales TaxID=2802 RepID=A0A0B5W3P8_9FLOR)

HSP 1 Score: 656 bits (1692), Expect = 6.690e-237
Identity = 317/360 (88.06%), Postives = 338/360 (93.89%), Query Frame = 1
Query:    1 MVATLERSESITLWERFASWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLIGVACYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSELESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSIVG 1080
            M A LER ES +LWERF +WITSTENRLYIGWFG +MIPTLLTATS +IIAF+AAPPVDIDGIREPVAGSLLYGNNIISGAVIPSS AIG+HFYPIWEAAS+DEWLYNGGPYQLIVLHFL+GV CY+GREWELSYRLGMRPWI VAF+APVAAA+AVFLVYPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFH  GVAGVFGGSLFSAMHGSLVTSSLIRET+E ES N GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFL  WPV+GIWLT++ VSTMAFNLNGFNFNQSVVDS+GRVINTWADI+NRA+LGMEVMHERNAHNFPLDLAS E LP+A+ APSI G
Sbjct:    3 MTAILERRESASLWERFCTWITSTENRLYIGWFGVVMIPTLLTATSVFIIAFVAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSAAIGIHFYPIWEAASLDEWLYNGGPYQLIVLHFLLGVLCYIGREWELSYRLGMRPWISVAFTAPVAAAAAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHQLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANNGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGLWPVLGIWLTAMSVSTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGMEVMHERNAHNFPLDLASQESLPLALVAPSING 362          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1369.2806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBA_ECTSI3.730e-25495.00Photosystem II protein D1 n=1129 Tax=Eukaryota Tax... [more]
A0A1N7TJI8_9PHAE1.520e-25393.89Photosystem II protein D1 n=412 Tax=Eukaryota TaxI... [more]
PSBA_PHATC1.020e-25192.50Photosystem II protein D1 n=590 Tax=root TaxID=1 R... [more]
A0A023JEK8_9STRA1.330e-24790.56Photosystem II protein D1 n=4 Tax=Bacillariophyta ... [more]
A0A7S2RD40_9STRA5.990e-24790.83Photosystem II protein D1 n=1 Tax=Rhizochromulina ... [more]
A0A451FLR3_9STRA7.080e-24389.39Photosystem II protein D1 n=179 Tax=Eukaryota TaxI... [more]
A0A3G2R049_9STRA1.680e-23988.33Photosystem II protein D1 n=23 Tax=cellular organi... [more]
PSBA_CYAM11.860e-23887.99Photosystem II protein D1 n=18 Tax=Eukaryota TaxID... [more]
PSBA_EMIHU6.210e-23786.67Photosystem II protein D1 n=71 Tax=root TaxID=1 Re... [more]
A0A0B5W3P8_9FLOR6.690e-23788.06Photosystem II protein D1 n=23 Tax=Ceramiales TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1369contigL-elsbetiae_contig1369:9347..10429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score703.4
Seed ortholog evalue5.6e-200
Seed eggNOG ortholog2880.D1J6Z2
Preferred namepsbA
KEGG koko:K02703
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
EggNOG OGs28IP8@1,2QR09@2759
EC1.10.3.9
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Exons1
Model size1083
Cds size1083
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.8258438-CDS-L-elsbetiae_contig1369:9346..104291622815532.8258438-CDS-L-elsbetiae_contig1369:9346..10429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1369 9347..10429 +
1691682944.529464-CDS-L-elsbetiae_contig1369:9346..104291691682944.529464-CDS-L-elsbetiae_contig1369:9346..10429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1369 9347..10429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1369.2806.1prot_L-elsbetiae_contig1369.2806.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1369 9347..10429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1369.2806.1

>prot_L-elsbetiae_contig1369.2806.1 ID=prot_L-elsbetiae_contig1369.2806.1|Name=mRNA_L-elsbetiae_contig1369.2806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=361bp
MVATLERSESITLWERFASWITSTENRLYIGWFGCLMIPTLLTATSCYII
AFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGVHFYPIWEAA
SVDEWLYNGGPYQLIVLHFLIGVACYMGREWELSYRLGMRPWIFVAFSAP
VAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMA
GVAGVFGGSLFSAMHGSLVTSSLIRETSELESVNYGYKFGQEEETYNIVA
AHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGF
NFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILP
VAISAPSIVG*
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mRNA from alignment at L-elsbetiae_contig1369:9347..10429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1369.2806.1 ID=mRNA_L-elsbetiae_contig1369.2806.1|Name=mRNA_L-elsbetiae_contig1369.2806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1083bp|location=Sequence derived from alignment at L-elsbetiae_contig1369:9347..10429+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTGCAACTTTAGAAAGATCAGAAAGTATTACATTATGGGAACGTTT TGCATCATGGATTACTAGTACTGAAAATCGTTTATACATTGGTTGGTTTG GATGTTTAATGATTCCTACTTTATTAACAGCAACTTCATGCTATATTATT GCTTTTATAGCTGCTCCACCTGTTGATATAGATGGTATTCGTGAACCGGT AGCAGGATCTTTATTATATGGTAACAATATTATTAGTGGTGCTGTTATTC CAAGTTCAAATGCAATTGGTGTTCATTTTTATCCAATCTGGGAAGCTGCT TCTGTTGACGAATGGTTATATAACGGTGGTCCATACCAATTAATTGTATT ACATTTCTTAATTGGTGTTGCTTGTTATATGGGTCGTGAATGGGAACTTA GTTACCGTTTAGGAATGCGTCCTTGGATTTTTGTAGCATTCTCTGCTCCT GTAGCAGCAGCATCTGCAGTATTTTTAGTATATCCTATCGGACAAGGAAG TTTTTCTGATGGTATGCCATTAGGTATTTCAGGTACATTTAACTTTATGA TCGTTTTCCAAGCAGAACATAATATTTTAATGCATCCATTTCATATGGCT GGTGTAGCTGGTGTATTTGGTGGTTCATTATTTAGTGCTATGCATGGTTC TTTAGTTACATCAAGTTTAATTCGTGAAACAAGTGAACTTGAATCAGTAA ATTATGGTTATAAATTTGGTCAAGAAGAAGAAACTTATAATATCGTAGCT GCGCATGGTTATTTTGGACGTTTAATTTTCCAATATGCTAGTTTTAATAA TTCTAGAGCTTTACATTTCTTTTTAGCTGCTTGGCCAGTAGTAGGTATTT GGTTAACTTCTCTTGGTGTAAGTACAATGGCATTTAATTTAAATGGTTTT AATTTCAATCAATCAGTTGTTGATAGTGAAGGTCGTGTAATTAATACATG GGCAGATATTATCAATCGTGCAGATTTAGGTATGGAAGTAATGCATGAAC GTAATGCACATAATTTCCCTTTAGATTTAGCATCTAATGAGATTCTTCCT GTAGCAATTTCAGCTCCTTCTATCGTAGGTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1369:9347..10429+

>mRNA_L-elsbetiae_contig1369.2806.1 ID=mRNA_L-elsbetiae_contig1369.2806.1|Name=mRNA_L-elsbetiae_contig1369.2806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2166bp|location=Sequence derived from alignment at L-elsbetiae_contig1369:9347..10429+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTGCAACTTTAGAAAGATCAGAAAGTATTACATTATGGGAACGTTT
TGCATCATGGATTACTAGTACTGAAAATCGTTTATACATTGGTTGGTTTG
GATGTTTAATGATTCCTACTTTATTAACAGCAACTTCATGCTATATTATT
GCTTTTATAGCTGCTCCACCTGTTGATATAGATGGTATTCGTGAACCGGT
AGCAGGATCTTTATTATATGGTAACAATATTATTAGTGGTGCTGTTATTC
CAAGTTCAAATGCAATTGGTGTTCATTTTTATCCAATCTGGGAAGCTGCT
TCTGTTGACGAATGGTTATATAACGGTGGTCCATACCAATTAATTGTATT
ACATTTCTTAATTGGTGTTGCTTGTTATATGGGTCGTGAATGGGAACTTA
GTTACCGTTTAGGAATGCGTCCTTGGATTTTTGTAGCATTCTCTGCTCCT
GTAGCAGCAGCATCTGCAGTATTTTTAGTATATCCTATCGGACAAGGAAG
TTTTTCTGATGGTATGCCATTAGGTATTTCAGGTACATTTAACTTTATGA
TCGTTTTCCAAGCAGAACATAATATTTTAATGCATCCATTTCATATGGCT
GGTGTAGCTGGTGTATTTGGTGGTTCATTATTTAGTGCTATGCATGGTTC
TTTAGTTACATCAAGTTTAATTCGTGAAACAAGTGAACTTGAATCAGTAA
ATTATGGTTATAAATTTGGTCAAGAAGAAGAAACTTATAATATCGTAGCT
GCGCATGGTTATTTTGGACGTTTAATTTTCCAATATGCTAGTTTTAATAA
TTCTAGAGCTTTACATTTCTTTTTAGCTGCTTGGCCAGTAGTAGGTATTT
GGTTAACTTCTCTTGGTGTAAGTACAATGGCATTTAATTTAAATGGTTTT
AATTTCAATCAATCAGTTGTTGATAGTGAAGGTCGTGTAATTAATACATG
GGCAGATATTATCAATCGTGCAGATTTAGGTATGGAAGTAATGCATGAAC
GTAATGCACATAATTTCCCTTTAGATTTAGCATCTAATGAGATTCTTCCT
GTAGCAATTTCAGCTCCTTCTATCGTAGGTTAAATGGTTGCAACTTTAGA
AAGATCAGAAAGTATTACATTATGGGAACGTTTTGCATCATGGATTACTA
GTACTGAAAATCGTTTATACATTGGTTGGTTTGGATGTTTAATGATTCCT
ACTTTATTAACAGCAACTTCATGCTATATTATTGCTTTTATAGCTGCTCC
ACCTGTTGATATAGATGGTATTCGTGAACCGGTAGCAGGATCTTTATTAT
ATGGTAACAATATTATTAGTGGTGCTGTTATTCCAAGTTCAAATGCAATT
GGTGTTCATTTTTATCCAATCTGGGAAGCTGCTTCTGTTGACGAATGGTT
ATATAACGGTGGTCCATACCAATTAATTGTATTACATTTCTTAATTGGTG
TTGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTACCGTTTAGGAATG
CGTCCTTGGATTTTTGTAGCATTCTCTGCTCCTGTAGCAGCAGCATCTGC
AGTATTTTTAGTATATCCTATCGGACAAGGAAGTTTTTCTGATGGTATGC
CATTAGGTATTTCAGGTACATTTAACTTTATGATCGTTTTCCAAGCAGAA
CATAATATTTTAATGCATCCATTTCATATGGCTGGTGTAGCTGGTGTATT
TGGTGGTTCATTATTTAGTGCTATGCATGGTTCTTTAGTTACATCAAGTT
TAATTCGTGAAACAAGTGAACTTGAATCAGTAAATTATGGTTATAAATTT
GGTCAAGAAGAAGAAACTTATAATATCGTAGCTGCGCATGGTTATTTTGG
ACGTTTAATTTTCCAATATGCTAGTTTTAATAATTCTAGAGCTTTACATT
TCTTTTTAGCTGCTTGGCCAGTAGTAGGTATTTGGTTAACTTCTCTTGGT
GTAAGTACAATGGCATTTAATTTAAATGGTTTTAATTTCAATCAATCAGT
TGTTGATAGTGAAGGTCGTGTAATTAATACATGGGCAGATATTATCAATC
GTGCAGATTTAGGTATGGAAGTAATGCATGAACGTAATGCACATAATTTC
CCTTTAGATTTAGCATCTAATGAGATTCTTCCTGTAGCAATTTCAGCTCC
TTCTATCGTAGGTTAA
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