mRNA_L-elsbetiae_contig1369.2805.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1369.2805.1
Unique NamemRNA_L-elsbetiae_contig1369.2805.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1369.2805.1 vs. uniprot
Match: A0A8E5XRE0_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRE0_9PHAE)

HSP 1 Score: 364 bits (934), Expect = 5.550e-124
Identity = 188/262 (71.76%), Postives = 217/262 (82.82%), Query Frame = 1
Query:    1 LLNRWINFGYFPLSNLYESLLFLASLLLIVYQFLEYKTKSKLLGALIIPIILLIYSFANLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYATLIIGSVLSILFLIISLQNLPPLFFFKLFFNIDSDLEVVINSYLLNYPNSLYLEKKK-----KRGKLLQNIDNWSYRTISLGFPFLTIGIIAGAIWANEAWGSYWSWDPKETWALVTWLVFASYLHVRLIKGWEGRNPAILGSIGFFVVWICYLGVNFLGQGLHSYGWL 771
            L NRWI FGYFPLSNLYESLLFL+ +LL+V++FLEY+T+SKL GA ++PIILLI SFA+LTLPLEMQKA+ALVP+LQSNWLMMHVSLMMLSYA LIIGS++SILFLI+ L     + + + F N + +    I + +   P    LE+ K         LL N+DNWSYRTISLGFPFLTIGIIAGA+WANEAWGSYWSWDPKETWAL+TWLVFA+YLHVRLIKGW+G  PA+LGSIGFFVVWICYLGVNFLGQGLHSYGWL
Sbjct:   56 LANRWIVFGYFPLSNLYESLLFLSCMLLLVHRFLEYRTQSKLFGATLLPIILLITSFADLTLPLEMQKANALVPSLQSNWLMMHVSLMMLSYAVLIIGSLISILFLIVCLPI--KVNYEEKFTNTNYEAGESIINLITQQPIKGELEQLKILYNMDYNSLLNNLDNWSYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHVRLIKGWDGEKPAMLGSIGFFVVWICYLGVNFLGQGLHSYGWL 315          
BLAST of mRNA_L-elsbetiae_contig1369.2805.1 vs. uniprot
Match: A0A8F0FAP1_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAP1_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 1.360e-119
Identity = 181/283 (63.96%), Postives = 215/283 (75.97%), Query Frame = 1
Query:    1 LLNRWINFGYFPLSNLYESLLFLASLLLIVYQFLEYKTKSKLLGALIIPIILLIYSFANLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYATLIIGSVLSILFLIISLQNLPPLFFFKLFFNIDSDLEVVINSY--------------------LLNYPNSLYLEKKK-----KRGKLLQNIDNWSYRTISLGFPFLTIGIIAGAIWANEAWGSYWSWDPKETWALVTWLVFASYLHVRLIKGWEGRNPAILGSIGFFVVWICYLGVNFLGQGLHSYGWLS 774
            LL+RWI  GYFPLSNLYESLLFL+ ++L VYQF+EYKTKSK+ GA+++P++L I  FA+LTLPLEM+KASALVPALQSNWLMMHVSLMMLSYA LI+GS++SILFLII             F ++  D E+   SY                     L+  + +   K+K     ++ + L N+DNW YRTISLGFPFLTIGIIAGA+WANEAWGSYWSWDPKETWAL+TWL+FA+YLH+RLIKGW G+ PAIL SIGFFVVWICYLGVNFLGQGLHSYGWL+
Sbjct:   56 LLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFLII-------------FLSLSKDSEISFTSYGSYEEYARAENIEIRDLYNVFLDPLDKMSASKQKELRESRKLEFLYNLDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHLRLIKGWVGKGPAILASIGFFVVWICYLGVNFLGQGLHSYGWLT 325          
BLAST of mRNA_L-elsbetiae_contig1369.2805.1 vs. uniprot
Match: A0A8F0F862_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F862_9PHAE)

HSP 1 Score: 347 bits (889), Expect = 5.930e-117
Identity = 184/275 (66.91%), Postives = 209/275 (76.00%), Query Frame = 1
Query:    1 LLNRWINFGYFPLSNLYESLLFLASLLLIVYQFLEYKTKSKLLGALIIPIILLIYSFANLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYATLIIGSVLSILFLIISLQNLPP--LFFFKLFFNIDSDLEVVINSYLLNYPNS---------------LYLEKKKKRGKLLQNIDNWSYRTISLGFPFLTIGIIAGAIWANEAWGSYWSWDPKETWALVTWLVFASYLHVRLIKGWEGRNPAILGSIGFFVVWICYLGVNFLGQGLHSYGWLS 774
            L  RW N+GYFPLSNLYESLLFLA LL +V+Q LEY+T+SK  G +I+PIIL I SFA+LTLPLEMQKASALVPALQSNWLMMHVSLMMLSYA L++GS+ SI+FLI  L  LP       K FF+  S++ + I      Y NS                Y +    + K L  +DNWSYRTISLGFP LTIGIIAGA+WANEAWGSYWSWDPKETWAL+TWLVFA+YLHVRLI GW G+ PAIL S+GFFVVWICYLGVNFLGQGLH+YGWLS
Sbjct:   56 LATRWGNYGYFPLSNLYESLLFLACLLSLVHQILEYQTQSKFFGTIILPIILFITSFADLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLLGSLFSIIFLITFLP-LPKESSSITKDFFSTQSEIALKIEEDFQKYLNSNSVEAGGIQINESIQKYYDLNLLKIKFLITLDNWSYRTISLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHVRLIVGWSGKGPAILASLGFFVVWICYLGVNFLGQGLHTYGWLS 329          
BLAST of mRNA_L-elsbetiae_contig1369.2805.1 vs. uniprot
Match: A0A023HBC4_9STRA (Cytochrome c biogenesis protein CcsA n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A023HBC4_9STRA)

HSP 1 Score: 343 bits (881), Expect = 5.480e-116
Identity = 179/260 (68.85%), Postives = 208/260 (80.00%), Query Frame = 1
Query:    7 NRWINFGYFPLSNLYESLLFLASLLLIVYQFLEYKTKSKLLGALIIPIILLIYSFANLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYATLIIGSVLSILFLIISLQN---LPPLFFFKLFFNIDSDLEVVINSYLLNYPNSLYLE-KKKKRGKLLQNIDNWSYRTISLGFPFLTIGIIAGAIWANEAWGSYWSWDPKETWALVTWLVFASYLHVRLIKGWEGRNPAILGSIGFFVVWICYLGVNFLGQGLHSYGWLS 774
            +RWI  GYFPLSNLYESLLFL   LL V  ++E+KT SKL+GA++IP+ LLI  FANLTLP+EMQKAS LVPALQSNWLM+HVS+MM+SY TLIIGS+LSILFL+IS      L P+    + F+      V+I SY+ N   +L  E  K  + KLL N+DNWSYR I LGFPFLTIGIIAG +WANEAWGSYWSWDPKETWAL+TWLVFA+YLH RL KGWEGR  A+LGS+GFFV+WICYLGVNFLG+GLHSYGWLS
Sbjct:   59 SRWIVAGYFPLSNLYESLLFLTWTLLTVCLYIEFKTNSKLIGAILIPVALLINGFANLTLPIEMQKASPLVPALQSNWLMLHVSMMMVSYGTLIIGSLLSILFLVISKGKEVELKPVNNSYISFS-----NVMIESYV-NKSETLSTEFSKLGKQKLLYNLDNWSYRVIGLGFPFLTIGIIAGGVWANEAWGSYWSWDPKETWALITWLVFATYLHSRLTKGWEGRKTAVLGSLGFFVIWICYLGVNFLGKGLHSYGWLS 312          
BLAST of mRNA_L-elsbetiae_contig1369.2805.1 vs. uniprot
Match: A0A2I4Q2E4_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2E4_9PHAE)

HSP 1 Score: 342 bits (876), Expect = 3.040e-115
Identity = 167/258 (64.73%), Postives = 206/258 (79.84%), Query Frame = 1
Query:    1 LLNRWINFGYFPLSNLYESLLFLASLLLIVYQFLEYKTKSKLLGALIIPIILLIYSFANLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYATLIIGSVLSILFLIISLQNLPPLFFFKLFFNIDSDLEVVINSYLLNYPNSLYLEKKKKRGKLLQNIDNWSYRTISLGFPFLTIGIIAGAIWANEAWGSYWSWDPKETWALVTWLVFASYLHVRLIKGWEGRNPAILGSIGFFVVWICYLGVNFLGQGLHSYGWLS 774
            LLNRW+ +GYFP+SNLYESLLFL+ LLLI++Q LEY+T+S++ GAL++P IL I SFA+LTLPLEMQKA+ALVP+LQSNWLMMHVSLM+LSYA L++GS+ SI+FL++ L +       K   N    ++ +    +  + N    E      + L  +DNWSY+ ISLGFP LTIGIIAGA+WANEAWGSYWSWDPKETWAL+TWLVFA+YLH+RLIKGW G+ PAIL S+GFF +W+CYLGVNFLGQGLHSYGWLS
Sbjct:   56 LLNRWVTYGYFPISNLYESLLFLSCLLLIIHQILEYQTQSRIFGALLLPSILFITSFADLTLPLEMQKATALVPSLQSNWLMMHVSLMLLSYAILLLGSLFSIIFLVLFLPSER-----KNEINDKLKIKTITKKSIFAFYNIKAFEPYIPSTEFLFILDNWSYKMISLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHIRLIKGWSGKGPAILASLGFFFIWVCYLGVNFLGQGLHSYGWLS 308          
BLAST of mRNA_L-elsbetiae_contig1369.2805.1 vs. uniprot
Match: A0A2U9NM76_9STRA (Cytochrome c biogenesis protein CcsA n=1 Tax=Proboscia sp. TaxID=1923967 RepID=A0A2U9NM76_9STRA)

HSP 1 Score: 342 bits (876), Expect = 3.150e-115
Identity = 176/271 (64.94%), Postives = 208/271 (76.75%), Query Frame = 1
Query:    1 LLNRWINFGYFPLSNLYESLLFLASLLLIVYQFLEYKTKSKLLGALIIPIILLIYSFANLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYATLIIGSVLSILFLIISLQNLPPLFFFKLFFNIDSDLEVVINSY------LLNY-------PNSLYLEKKKKRGKLLQNIDNWSYRTISLGFPFLTIGIIAGAIWANEAWGSYWSWDPKETWALVTWLVFASYLHVRLIKGWEGRNPAILGSIGFFVVWICYLGVNFLGQGLHSYGWLS 774
            L +RWI  GYFPLSNLYESLLFL   LL +Y ++E+KTKSKL+GA++IP+ LLI  FANLTL  +MQKAS LVPALQSNWLMMHVS+MMLSYA LI+GS+L ILFL+IS                D DL+V+  SY      ++NY       P+  +LE  K   KLL +IDNWSYR I LGFPFLT+GIIAG +WANEAWGSYWSWDPKETWAL+TW++FA+YLH R+ KGWEG+  AILG+IGFFV+WICYLGVNFLG+GLHSYGWLS
Sbjct:   57 LCSRWIISGYFPLSNLYESLLFLTWTLLTIYLYIEFKTKSKLMGAILIPVALLINGFANLTLSADMQKASPLVPALQSNWLMMHVSMMMLSYAMLIMGSLLCILFLVISKSK-------------DVDLQVLDKSYSPLYNVMVNYYEAKLFSPSDEFLELGKL--KLLHSIDNWSYRIIGLGFPFLTVGIIAGGVWANEAWGSYWSWDPKETWALITWIIFATYLHSRITKGWEGKKTAILGTIGFFVIWICYLGVNFLGKGLHSYGWLS 312          
BLAST of mRNA_L-elsbetiae_contig1369.2805.1 vs. uniprot
Match: A0A2U9NQC9_9STRA (Cytochrome c biogenesis protein CcsA n=1 Tax=Actinocyclus subtilis TaxID=1630683 RepID=A0A2U9NQC9_9STRA)

HSP 1 Score: 341 bits (874), Expect = 6.340e-115
Identity = 178/260 (68.46%), Postives = 206/260 (79.23%), Query Frame = 1
Query:    1 LLNRWINFGYFPLSNLYESLLFLASLLLIVYQFLEYKTKSKLLGALIIPIILLIYSFANLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYATLIIGSVLSILFLIISLQNLPPLFFFKLFFNIDSDLEVVINSYLLNY--PNSLYLEKKKKRGKLLQNIDNWSYRTISLGFPFLTIGIIAGAIWANEAWGSYWSWDPKETWALVTWLVFASYLHVRLIKGWEGRNPAILGSIGFFVVWICYLGVNFLGQGLHSYGWLS 774
            L +RWI  GYFPLSNLYESLLFL   LL +Y ++EYKTKSKL+GA++IP+ LL+  FANLTL  EMQKAS LVPALQSNWLMMHVS+MMLSYATLIIGS+L ILFL+IS  N   + F  +  +      V+ N Y L    P+    E  K   KLL ++DNWSYR I LGFPFLTIGIIAG +WANEAWGSYWSWDPKETWAL+TWLVFA+YLH RLIKGWEG+  AILGS+GFF++WICYLGVNFLG+GLHSYGW+S
Sbjct:   57 LCSRWIVAGYFPLSNLYESLLFLTWTLLTLYLYIEYKTKSKLIGAILIPVALLVNGFANLTLSTEMQKASPLVPALQSNWLMMHVSMMMLSYATLIIGSLLCILFLVIS--NYQDIDFQSINNSSLPFSNVLFNYYELKLFSPSDEISELGKL--KLLYSLDNWSYRIIGLGFPFLTIGIIAGGVWANEAWGSYWSWDPKETWALITWLVFATYLHSRLIKGWEGKKTAILGSLGFFIIWICYLGVNFLGKGLHSYGWVS 312          
BLAST of mRNA_L-elsbetiae_contig1369.2805.1 vs. uniprot
Match: A0A7S6U9V9_9STRA (Cytochrome c biogenesis protein CcsA n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V9_9STRA)

HSP 1 Score: 342 bits (877), Expect = 9.090e-115
Identity = 184/300 (61.33%), Postives = 213/300 (71.00%), Query Frame = 1
Query:    1 LLNRWINFGYFPLSNLYESLLFLASLLLIVYQFLEYKTKSKLLGALIIPIILLIYSFANLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYATLIIGSVLSILFLII-------------------------SLQNLPPLFFFKL-----------------FFNIDSDLEVVINSYLLNYPNSLYLEKKKKRGKLLQNIDNWSYRTISLGFPFLTIGIIAGAIWANEAWGSYWSWDPKETWALVTWLVFASYLHVRLIKGWEGRNPAILGSIGFFVVWICYLGVNFLGQGLHSYGWLS 774
            L+NRWIN GYFPLSNLYESLLFL+ +LL ++Q +EYK +SKLLGA+++PIIL I  F++LTLP+EMQKAS+LVPALQSNWLMMHVSLMMLSYATLI+GS+LSILF +I                          L  L  +  ++L                 FF I   L+  I +Y   Y  S        R +LL  ID WSYR ISLGFPFLTIGIIAGA+WANEAWGSYWSWDPKETWAL+TWL+FA+YLH+RLIKGW G+ PA L SIGFFVVWICYLGVNFLGQGLHSYGWLS
Sbjct:   56 LMNRWINHGYFPLSNLYESLLFLSCILLFIHQIIEYKIQSKLLGAILLPIILFINGFSSLTLPIEMQKASSLVPALQSNWLMMHVSLMMLSYATLILGSLLSILFSLIFVTAPKDLSKLVKPWERPFKTNSFERLYELTDIDRYELPQQDFLTRGKFTASSDSFFEISPGLQTAIPNYDWRYEFSRSFSVIF-RIRLLHKIDIWSYRIISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHIRLIKGWHGKRPAFLASIGFFVVWICYLGVNFLGQGLHSYGWLS 354          
BLAST of mRNA_L-elsbetiae_contig1369.2805.1 vs. uniprot
Match: A0A089VPA9_9STRA (Cytochrome c biogenesis protein CcsA n=3 Tax=Rhizosoleniaceae TaxID=33845 RepID=A0A089VPA9_9STRA)

HSP 1 Score: 340 bits (872), Expect = 1.280e-114
Identity = 176/269 (65.43%), Postives = 207/269 (76.95%), Query Frame = 1
Query:    1 LLNRWINFGYFPLSNLYESLLFLASLLLIVYQFLEYKTKSKLLGALIIPIILLIYSFANLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYATLIIGSVLSILFLIISLQNLPPLFFFKLFFNIDSDLEVVINSYLLNYPNSL-YLEKK--------KKRGKL--LQNIDNWSYRTISLGFPFLTIGIIAGAIWANEAWGSYWSWDPKETWALVTWLVFASYLHVRLIKGWEGRNPAILGSIGFFVVWICYLGVNFLGQGLHSYGWLS 774
            L +RWI  GYFPLSNLYESLLFL   LL +Y FLE+KTKSKL+GA++IP+ LLI  FANLTL  EMQK+S LVPALQSNWLMMHVS+MMLSYATLI+GS+L ILFL++S                D DL+++  SYL  Y   L Y E K         + GKL  L ++DNWSYR I LGFPFLTIGIIAG +WANEAWGSYWSWDPKETWAL+TW++FA+YLH R+ KGWEG+  AILG++GFFV+W+CYLGVNFLG+GLHSYGWLS
Sbjct:   57 LCSRWIVAGYFPLSNLYESLLFLTWTLLTIYLFLEFKTKSKLMGAILIPVALLISGFANLTLSPEMQKSSPLVPALQSNWLMMHVSMMMLSYATLIMGSLLCILFLVVSNYE-------------DVDLQLIDESYLPLYNVMLDYYETKLFSPSDEVSELGKLKLLHSLDNWSYRIIGLGFPFLTIGIIAGGVWANEAWGSYWSWDPKETWALITWIIFATYLHSRITKGWEGKKTAILGALGFFVIWVCYLGVNFLGKGLHSYGWLS 312          
BLAST of mRNA_L-elsbetiae_contig1369.2805.1 vs. uniprot
Match: A0A023JEL7_9STRA (Cytochrome c biogenesis protein CcsA n=1 Tax=Eunotia naegelii TaxID=1458866 RepID=A0A023JEL7_9STRA)

HSP 1 Score: 339 bits (869), Expect = 3.640e-114
Identity = 176/269 (65.43%), Postives = 208/269 (77.32%), Query Frame = 1
Query:    1 LLNRWINFGYFPLSNLYESLLFLASLLLIVYQFLEYKTKSKLLGALIIPIILLIYSFANLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYATLIIGSVLSILFLIISLQNLPPLFFFKLFFNIDSDLEVVINSYLLNYPNSL-YLEKK--------KKRGKL--LQNIDNWSYRTISLGFPFLTIGIIAGAIWANEAWGSYWSWDPKETWALVTWLVFASYLHVRLIKGWEGRNPAILGSIGFFVVWICYLGVNFLGQGLHSYGWLS 774
            L +RWI  GYFPLSNLYESLLFL  +LL +Y ++E KTKSKL+GAL++P+ LLI  FANLTL  EMQKAS LVPALQSNWLMMHVS+M+LSYATLIIGS+L ILFL+I+                D DL+++ +S L  Y   L Y E K         + GKL  LQ++DNWSYR I LGFPFLTIGII+GA+WANEAWGSYWSWDPKETWAL+TWLVFA+YLH R+ KGWEG+  A+LG IGFFV+W+CYLGVNFLG+GLHSYGW+S
Sbjct:   57 LCSRWIIAGYFPLSNLYESLLFLTWMLLTIYLYIETKTKSKLIGALLVPLALLINGFANLTLSPEMQKASPLVPALQSNWLMMHVSMMLLSYATLIIGSLLCILFLVIARYK-------------DIDLKIIDDSSLPLYNIMLDYYEAKLLSPSTEISELGKLKLLQSLDNWSYRIIGLGFPFLTIGIISGAVWANEAWGSYWSWDPKETWALITWLVFATYLHARITKGWEGKKTAVLGGIGFFVIWVCYLGVNFLGKGLHSYGWIS 312          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1369.2805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8E5XRE0_9PHAE5.550e-12471.76Cytochrome c biogenesis protein CcsA n=1 Tax=Ishig... [more]
A0A8F0FAP1_9PHAE1.360e-11963.96Cytochrome c biogenesis protein CcsA n=1 Tax=Desma... [more]
A0A8F0F862_9PHAE5.930e-11766.91Cytochrome c biogenesis protein CcsA n=1 Tax=Proto... [more]
A0A023HBC4_9STRA5.480e-11668.85Cytochrome c biogenesis protein CcsA n=1 Tax=Lepto... [more]
A0A2I4Q2E4_9PHAE3.040e-11564.73Cytochrome c biogenesis protein CcsA n=1 Tax=Dicty... [more]
A0A2U9NM76_9STRA3.150e-11564.94Cytochrome c biogenesis protein CcsA n=1 Tax=Probo... [more]
A0A2U9NQC9_9STRA6.340e-11568.46Cytochrome c biogenesis protein CcsA n=1 Tax=Actin... [more]
A0A7S6U9V9_9STRA9.090e-11561.33Cytochrome c biogenesis protein CcsA n=1 Tax=Schiz... [more]
A0A089VPA9_9STRA1.280e-11465.43Cytochrome c biogenesis protein CcsA n=3 Tax=Rhizo... [more]
A0A023JEL7_9STRA3.640e-11465.43Cytochrome c biogenesis protein CcsA n=1 Tax=Eunot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1369contigL-elsbetiae_contig1369:5785..6561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.5
Seed ortholog evalue2.2e-89
Seed eggNOG ortholog159749.E7BWK2
Preferred nameccsA
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0008150,GO:0008152,GO:0009536,GO:0015886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051181,GO:0051234,GO:0055114,GO:0071702,GO:0071705,GO:1901678
EggNOG free text desc.Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment
EggNOG OGs2QU0T@2759,2XFBW@2836,COG0755@1
COG Functional cat.P
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size777
Cds size777
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.780828-CDS-L-elsbetiae_contig1369:5784..65611622815532.780828-CDS-L-elsbetiae_contig1369:5784..6561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1369 5785..6561 -
1691682944.5168269-CDS-L-elsbetiae_contig1369:5784..65611691682944.5168269-CDS-L-elsbetiae_contig1369:5784..6561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1369 5785..6561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1369.2805.1prot_L-elsbetiae_contig1369.2805.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1369 5785..6561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1369.2805.1

>prot_L-elsbetiae_contig1369.2805.1 ID=prot_L-elsbetiae_contig1369.2805.1|Name=mRNA_L-elsbetiae_contig1369.2805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=259bp
LLNRWINFGYFPLSNLYESLLFLASLLLIVYQFLEYKTKSKLLGALIIPI
ILLIYSFANLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYATLIIGSV
LSILFLIISLQNLPPLFFFKLFFNIDSDLEVVINSYLLNYPNSLYLEKKK
KRGKLLQNIDNWSYRTISLGFPFLTIGIIAGAIWANEAWGSYWSWDPKET
WALVTWLVFASYLHVRLIKGWEGRNPAILGSIGFFVVWICYLGVNFLGQG
LHSYGWLS*
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mRNA from alignment at L-elsbetiae_contig1369:5785..6561-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1369.2805.1 ID=mRNA_L-elsbetiae_contig1369.2805.1|Name=mRNA_L-elsbetiae_contig1369.2805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=777bp|location=Sequence derived from alignment at L-elsbetiae_contig1369:5785..6561- (Laminarionema elsbetiae ELsaHSoW15)
TTATTAAATCGATGGATTAATTTTGGTTATTTTCCATTAAGTAACTTATA TGAATCATTATTATTTTTAGCTTCTTTACTTTTAATTGTTTATCAATTTT TAGAATATAAAACTAAAAGTAAATTATTAGGGGCTTTAATAATACCAATA ATTTTATTAATATATAGTTTTGCAAATTTAACATTACCTTTAGAAATGCA AAAAGCAAGCGCTTTAGTACCAGCTTTACAATCCAATTGGTTAATGATGC ATGTCAGTTTAATGATGTTAAGTTATGCAACATTAATTATTGGATCTGTA TTATCTATTTTATTTTTAATCATAAGTTTACAAAATTTACCTCCATTATT TTTTTTTAAATTATTTTTTAATATTGATTCTGATTTAGAAGTTGTTATAA ATTCTTATTTATTAAATTATCCAAATTCATTATATTTAGAAAAAAAAAAA AAACGAGGTAAGTTATTACAAAATATTGATAATTGGAGTTATCGAACAAT AAGTTTAGGGTTCCCATTTTTAACGATTGGTATTATTGCTGGTGCTATTT GGGCAAATGAAGCCTGGGGCTCATATTGGAGTTGGGATCCAAAAGAAACA TGGGCATTAGTTACATGGCTTGTTTTTGCATCTTATTTACATGTTCGATT AATTAAAGGGTGGGAAGGTCGAAATCCAGCGATTTTAGGTAGTATTGGTT TTTTTGTTGTTTGGATTTGTTATTTAGGAGTAAATTTTTTAGGACAAGGA TTACATAGTTATGGATGGTTATCCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1369:5785..6561-

>mRNA_L-elsbetiae_contig1369.2805.1 ID=mRNA_L-elsbetiae_contig1369.2805.1|Name=mRNA_L-elsbetiae_contig1369.2805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1554bp|location=Sequence derived from alignment at L-elsbetiae_contig1369:5785..6561- (Laminarionema elsbetiae ELsaHSoW15)
TTATTAAATCGATGGATTAATTTTGGTTATTTTCCATTAAGTAACTTATA
TGAATCATTATTATTTTTAGCTTCTTTACTTTTAATTGTTTATCAATTTT
TAGAATATAAAACTAAAAGTAAATTATTAGGGGCTTTAATAATACCAATA
ATTTTATTAATATATAGTTTTGCAAATTTAACATTACCTTTAGAAATGCA
AAAAGCAAGCGCTTTAGTACCAGCTTTACAATCCAATTGGTTAATGATGC
ATGTCAGTTTAATGATGTTAAGTTATGCAACATTAATTATTGGATCTGTA
TTATCTATTTTATTTTTAATCATAAGTTTACAAAATTTACCTCCATTATT
TTTTTTTAAATTATTTTTTAATATTGATTCTGATTTAGAAGTTGTTATAA
ATTCTTATTTATTAAATTATCCAAATTCATTATATTTAGAAAAAAAAAAA
AAACGAGGTAAGTTATTACAAAATATTGATAATTGGAGTTATCGAACAAT
AAGTTTAGGGTTCCCATTTTTAACGATTGGTATTATTGCTGGTGCTATTT
GGGCAAATGAAGCCTGGGGCTCATATTGGAGTTGGGATCCAAAAGAAACA
TGGGCATTAGTTACATGGCTTGTTTTTGCATCTTATTTACATGTTCGATT
AATTAAAGGGTGGGAAGGTCGAAATCCAGCGATTTTAGGTAGTATTGGTT
TTTTTGTTGTTTGGATTTGTTATTTAGGAGTAAATTTTTTAGGACAAGGA
TTACATAGTTATGGATGGTTATCCTAATTATTAAATCGATGGATTAATTT
TGGTTATTTTCCATTAAGTAACTTATATGAATCATTATTATTTTTAGCTT
CTTTACTTTTAATTGTTTATCAATTTTTAGAATATAAAACTAAAAGTAAA
TTATTAGGGGCTTTAATAATACCAATAATTTTATTAATATATAGTTTTGC
AAATTTAACATTACCTTTAGAAATGCAAAAAGCAAGCGCTTTAGTACCAG
CTTTACAATCCAATTGGTTAATGATGCATGTCAGTTTAATGATGTTAAGT
TATGCAACATTAATTATTGGATCTGTATTATCTATTTTATTTTTAATCAT
AAGTTTACAAAATTTACCTCCATTATTTTTTTTTAAATTATTTTTTAATA
TTGATTCTGATTTAGAAGTTGTTATAAATTCTTATTTATTAAATTATCCA
AATTCATTATATTTAGAAAAAAAAAAAAAACGAGGTAAGTTATTACAAAA
TATTGATAATTGGAGTTATCGAACAATAAGTTTAGGGTTCCCATTTTTAA
CGATTGGTATTATTGCTGGTGCTATTTGGGCAAATGAAGCCTGGGGCTCA
TATTGGAGTTGGGATCCAAAAGAAACATGGGCATTAGTTACATGGCTTGT
TTTTGCATCTTATTTACATGTTCGATTAATTAAAGGGTGGGAAGGTCGAA
ATCCAGCGATTTTAGGTAGTATTGGTTTTTTTGTTGTTTGGATTTGTTAT
TTAGGAGTAAATTTTTTAGGACAAGGATTACATAGTTATGGATGGTTATC
CTAA
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