mRNA_L-elsbetiae_contig13685.2797.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13685.2797.1
Unique NamemRNA_L-elsbetiae_contig13685.2797.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13685.2797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13685contigL-elsbetiae_contig13685:2065..2487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size318
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.3631918-CDS-L-elsbetiae_contig13685:2064..23821622815532.3631918-CDS-L-elsbetiae_contig13685:2064..2382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13685 2065..2382 +
1691682944.3591821-CDS-L-elsbetiae_contig13685:2064..23821691682944.3591821-CDS-L-elsbetiae_contig13685:2064..2382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13685 2065..2382 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.373803-UTR-L-elsbetiae_contig13685:2382..24871622815532.373803-UTR-L-elsbetiae_contig13685:2382..2487Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13685 2383..2487 +
1691682944.369464-UTR-L-elsbetiae_contig13685:2382..24871691682944.369464-UTR-L-elsbetiae_contig13685:2382..2487Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13685 2383..2487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13685.2797.1prot_L-elsbetiae_contig13685.2797.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13685 2065..2382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13685.2797.1

>prot_L-elsbetiae_contig13685.2797.1 ID=prot_L-elsbetiae_contig13685.2797.1|Name=mRNA_L-elsbetiae_contig13685.2797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MYVCVKGEPTENRNARIAGRDVHNALFLFTNTEKIGAPAGPLRLRAGQIF
HNSTGCIVSGDPKFLQLPKNAEAIVYSLVYHRKTFCGALSTAPTAIQVQI
GKTFG*
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mRNA from alignment at L-elsbetiae_contig13685:2065..2487+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13685.2797.1 ID=mRNA_L-elsbetiae_contig13685.2797.1|Name=mRNA_L-elsbetiae_contig13685.2797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=423bp|location=Sequence derived from alignment at L-elsbetiae_contig13685:2065..2487+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGTATGTGTAAAAGGCGAACCGACAGAAAATCGAAACGCGCGGAT
TGCAGGGAGGGACGTACATAACGCGCTTTTTTTGTTCACGAACACGGAAA
AAATCGGAGCCCCCGCTGGCCCGCTTCGCCTTAGGGCTGGGCAGATATTC
CACAATAGCACCGGCTGTATTGTAAGTGGCGATCCAAAATTCCTCCAACT
TCCAAAAAACGCCGAAGCAATTGTCTACAGCCTGGTGTACCATCGGAAGA
CTTTTTGTGGCGCGCTTTCGACGGCCCCCACAGCGATACAGGTTCAAATA
GGGAAGACTTTCGGGTAAAATTTCAACGTCATTGGAGGTAGATTCAGGGT
GCGTCTGAAGATAATTATTCATGTTTGCGTAGATCCCTGTAAACGCTTTT
AACGGAGCCCCCTGCAACCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13685:2065..2487+

>mRNA_L-elsbetiae_contig13685.2797.1 ID=mRNA_L-elsbetiae_contig13685.2797.1|Name=mRNA_L-elsbetiae_contig13685.2797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig13685:2065..2487+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGTATGTGTAAAAGGCGAACCGACAGAAAATCGAAACGCGCGGAT
TGCAGGGAGGGACGTACATAACGCGCTTTTTTTGTTCACGAACACGGAAA
AAATCGGAGCCCCCGCTGGCCCGCTTCGCCTTAGGGCTGGGCAGATATTC
CACAATAGCACCGGCTGTATTGTAAGTGGCGATCCAAAATTCCTCCAACT
TCCAAAAAACGCCGAAGCAATTGTCTACAGCCTGGTGTACCATCGGAAGA
CTTTTTGTGGCGCGCTTTCGACGGCCCCCACAGCGATACAGGTTCAAATA
GGGAAGACTTTCGGGTAAATGTATGTATGTGTAAAAGGCGAACCGACAGA
AAATCGAAACGCGCGGATTGCAGGGAGGGACGTACATAACGCGCTTTTTT
TGTTCACGAACACGGAAAAAATCGGAGCCCCCGCTGGCCCGCTTCGCCTT
AGGGCTGGGCAGATATTCCACAATAGCACCGGCTGTATTGTAAGTGGCGA
TCCAAAATTCCTCCAACTTCCAAAAAACGCCGAAGCAATTGTCTACAGCC
TGGTGTACCATCGGAAGACTTTTTGTGGCGCGCTTTCGACGGCCCCCACA
GCGATACAGGTTCAAATAGGGAAGACTTTCGGGTAA
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