mRNA_L-elsbetiae_contig13663.2788.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13663.2788.1
Unique NamemRNA_L-elsbetiae_contig13663.2788.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13663.2788.1 vs. uniprot
Match: A0A6H5JHG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHG5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.080e-6
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 3 
Query:  588 RLLLAVWLKKRPGLLEKRVDVRFALKCQEFIELVKKG 698
            R   A+  K+RPGLLEKR DVRFALKCQEFIELVKKG
Sbjct:  691 RAATAMLQKERPGLLEKRADVRFALKCQEFIELVKKG 727
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BLAST of mRNA_L-elsbetiae_contig13663.2788.1 vs. uniprot
Match: D8LQC3_ECTSI (CTLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC3_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 5.200e-6
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  612 KKRPGLLEKRVDVRFALKCQEFIELVKKG 698
            ++RPGLLEKR DVRFALKCQEFIELVKKG
Sbjct:   57 RERPGLLEKRADVRFALKCQEFIELVKKG 85
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13663.2788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHG5_9PHAE1.080e-678.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQC3_ECTSI5.200e-689.66CTLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13663contigL-elsbetiae_contig13663:3602..4300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size699
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.454415-CDS-L-elsbetiae_contig13663:3601..40061622815531.454415-CDS-L-elsbetiae_contig13663:3601..4006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13663 3602..4006 +
1691682943.7601552-CDS-L-elsbetiae_contig13663:3601..40061691682943.7601552-CDS-L-elsbetiae_contig13663:3601..4006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13663 3602..4006 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.4662912-UTR-L-elsbetiae_contig13663:4006..43001622815531.4662912-UTR-L-elsbetiae_contig13663:4006..4300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13663 4007..4300 +
1691682943.7723556-UTR-L-elsbetiae_contig13663:4006..43001691682943.7723556-UTR-L-elsbetiae_contig13663:4006..4300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13663 4007..4300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13663.2788.1prot_L-elsbetiae_contig13663.2788.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13663 3602..4006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13663.2788.1

>prot_L-elsbetiae_contig13663.2788.1 ID=prot_L-elsbetiae_contig13663.2788.1|Name=mRNA_L-elsbetiae_contig13663.2788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
RGHRSAKERGGQTPGGLKSWFDARAACFSVFGAVDAGRPAVAGTEAEEFV
YCCCCGECRREIINQRLLTMTKRGRRKVWVCRVPGKRARGSVSKGRTPPP
YLPVGLAPPLLRRLSVGFLMLYLEQDTFFLRLHT*
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mRNA from alignment at L-elsbetiae_contig13663:3602..4300+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13663.2788.1 ID=mRNA_L-elsbetiae_contig13663.2788.1|Name=mRNA_L-elsbetiae_contig13663.2788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=699bp|location=Sequence derived from alignment at L-elsbetiae_contig13663:3602..4300+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGGCCACCGAAGTGCTAAAGAAAGAGGTGGGCAGACGCCAGGGGGGTT
GAAGTCGTGGTTTGACGCTCGCGCCGCCTGCTTCTCCGTGTTTGGAGCTG
TCGACGCCGGTCGACCAGCGGTTGCTGGAACGGAAGCGGAGGAGTTCGTT
TATTGTTGTTGTTGTGGGGAGTGTCGACGTGAGATCATAAATCAGCGGTT
GTTAACGATGACGAAAAGAGGACGACGGAAGGTGTGGGTTTGCCGCGTGC
CTGGAAAGAGGGCTCGTGGATCGGTGTCCAAAGGACGCACCCCCCCCCCC
TATTTGCCCGTTGGTTTGGCTCCCCCCTTGTTGCGACGTTTATCGGTTGG
ATTCCTCATGCTTTACCTAGAACAAGATACTTTTTTCTTGAGACTGCATA
CATGAGAGACTAGAAACAGAACGGGGTCGGGAGTCCTGTGTCGAAGTCCC
ATTACCTCCTGGCGAAGGGGAGTCGAGTAGTATATATGTCGCTCAAATGA
CCGCAGTTGCAATCACGGAGTTCCTTTCCTTCCCCGTCCTTTCCAGCCCC
TTGCATGCCCCCGTCCCCCGGGCGGGCCTCCGTAACCCGCTTGCTCCTTG
CTGTTTGGCTCAAAAAGCGCCCGGGGCTGCTGGAAAAGCGGGTGGATGTG
AGATTCGCTCTCAAGTGCCAAGAGTTCATCGAGCTGGTCAAGAAGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13663:3602..4300+

>mRNA_L-elsbetiae_contig13663.2788.1 ID=mRNA_L-elsbetiae_contig13663.2788.1|Name=mRNA_L-elsbetiae_contig13663.2788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig13663:3602..4300+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGGCCACCGAAGTGCTAAAGAAAGAGGTGGGCAGACGCCAGGGGGGTT
GAAGTCGTGGTTTGACGCTCGCGCCGCCTGCTTCTCCGTGTTTGGAGCTG
TCGACGCCGGTCGACCAGCGGTTGCTGGAACGGAAGCGGAGGAGTTCGTT
TATTGTTGTTGTTGTGGGGAGTGTCGACGTGAGATCATAAATCAGCGGTT
GTTAACGATGACGAAAAGAGGACGACGGAAGGTGTGGGTTTGCCGCGTGC
CTGGAAAGAGGGCTCGTGGATCGGTGTCCAAAGGACGCACCCCCCCCCCC
TATTTGCCCGTTGGTTTGGCTCCCCCCTTGTTGCGACGTTTATCGGTTGG
ATTCCTCATGCTTTACCTAGAACAAGATACTTTTTTCTTGAGACTGCATA
CATGACGCGGCCACCGAAGTGCTAAAGAAAGAGGTGGGCAGACGCCAGGG
GGGTTGAAGTCGTGGTTTGACGCTCGCGCCGCCTGCTTCTCCGTGTTTGG
AGCTGTCGACGCCGGTCGACCAGCGGTTGCTGGAACGGAAGCGGAGGAGT
TCGTTTATTGTTGTTGTTGTGGGGAGTGTCGACGTGAGATCATAAATCAG
CGGTTGTTAACGATGACGAAAAGAGGACGACGGAAGGTGTGGGTTTGCCG
CGTGCCTGGAAAGAGGGCTCGTGGATCGGTGTCCAAAGGACGCACCCCCC
CCCCCTATTTGCCCGTTGGTTTGGCTCCCCCCTTGTTGCGACGTTTATCG
GTTGGATTCCTCATGCTTTACCTAGAACAAGATACTTTTTTCTTGAGACT
GCATACATGA
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