mRNA_L-elsbetiae_contig13663.2787.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13663.2787.1
Unique NamemRNA_L-elsbetiae_contig13663.2787.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13663.2787.1 vs. uniprot
Match: A0A6H5JHG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHG5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.590e-23
Identity = 61/88 (69.32%), Postives = 70/88 (79.55%), Query Frame = 2 
Query:    2 VSDLLAEGGGGXXXXXXXXXXQTGRTCRRAVALASTLALRTRLRREILSGKIGAATEVLKKERPGLLEKRVDVRFALKCQEFIELVKK 265
            V+DLLA+GGGG          + G++  RAVALA+TL+ RTRLRREILSG I AAT +L+KERPGLLEKR DVRFALKCQEFIELVKK
Sbjct:  647 VTDLLADGGGGRAAG------RGGKS--RAVALAATLSFRTRLRREILSGNIRAATAMLQKERPGLLEKRADVRFALKCQEFIELVKK 726
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BLAST of mRNA_L-elsbetiae_contig13663.2787.1 vs. uniprot
Match: D8LQC3_ECTSI (CTLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC3_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 5.990e-23
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 2 
Query:    2 VSDLLAEGGGGXXXXXXXXXXQTGRTCRRAVALASTLALRTRLRREILSGKIGAATEVLKKERPGLLEKRVDVRFALKCQEFIELVKK 265
            V+DLLA+GGGG          + G++  RAVALA+TL+ RT+LRREILSG I AAT +L++ERPGLLEKR DVRFALKCQEFIELVKK
Sbjct:    5 VTDLLADGGGGGAAG------RVGKS--RAVALAATLSFRTKLRREILSGNIRAATTMLQRERPGLLEKRADVRFALKCQEFIELVKK 84
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13663.2787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHG5_9PHAE2.590e-2369.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQC3_ECTSI5.990e-2367.05CTLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13663contigL-elsbetiae_contig13663:3443..4300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.4022048-CDS-L-elsbetiae_contig13663:3442..36291622815531.4022048-CDS-L-elsbetiae_contig13663:3442..3629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13663 3443..3629 +
1691682943.7381687-CDS-L-elsbetiae_contig13663:3442..36291691682943.7381687-CDS-L-elsbetiae_contig13663:3442..3629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13663 3443..3629 +
1622815531.4226372-CDS-L-elsbetiae_contig13663:4218..42981622815531.4226372-CDS-L-elsbetiae_contig13663:4218..4298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13663 4219..4298 +
1691682943.7489889-CDS-L-elsbetiae_contig13663:4218..42981691682943.7489889-CDS-L-elsbetiae_contig13663:4218..4298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13663 4219..4298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13663.2787.1prot_L-elsbetiae_contig13663.2787.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13663 3443..4298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13663.2787.1

>prot_L-elsbetiae_contig13663.2787.1 ID=prot_L-elsbetiae_contig13663.2787.1|Name=mRNA_L-elsbetiae_contig13663.2787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
GVRPPRRRRRRRRRRRRAGGCADRPHVPPRRGPGVHASPEDAAEARDLVR
KDRRGHRSAKERAPGAAGKAGGCEIRSQVPRVHRAGQEG
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mRNA from alignment at L-elsbetiae_contig13663:3443..4300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13663.2787.1 ID=mRNA_L-elsbetiae_contig13663.2787.1|Name=mRNA_L-elsbetiae_contig13663.2787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig13663:3443..4300+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGTCCGACCTCCTCGCCGAAGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GGCAGGGGGGTGCGCAGACCGGCCGCACGTGCCGCCGCGCCGTGGCCCTG
GCGTCCACGCTAGCCCTGAGGACGCGGCTGAGGCGAGAGATCTTGTCCGG
AAAGATCGGCGCGGCCACCGAAGTGCTAAAGAAAGAGGTGGGCAGACGCC
AGGGGGGTTGAAGTCGTGGTTTGACGCTCGCGCCGCCTGCTTCTCCGTGT
TTGGAGCTGTCGACGCCGGTCGACCAGCGGTTGCTGGAACGGAAGCGGAG
GAGTTCGTTTATTGTTGTTGTTGTGGGGAGTGTCGACGTGAGATCATAAA
TCAGCGGTTGTTAACGATGACGAAAAGAGGACGACGGAAGGTGTGGGTTT
GCCGCGTGCCTGGAAAGAGGGCTCGTGGATCGGTGTCCAAAGGACGCACC
CCCCCCCCCTATTTGCCCGTTGGTTTGGCTCCCCCCTTGTTGCGACGTTT
ATCGGTTGGATTCCTCATGCTTTACCTAGAACAAGATACTTTTTTCTTGA
GACTGCATACATGAGAGACTAGAAACAGAACGGGGTCGGGAGTCCTGTGT
CGAAGTCCCATTACCTCCTGGCGAAGGGGAGTCGAGTAGTATATATGTCG
CTCAAATGACCGCAGTTGCAATCACGGAGTTCCTTTCCTTCCCCGTCCTT
TCCAGCCCCTTGCATGCCCCCGTCCCCCGGGCGGGCCTCCGTAACCCGCT
TGCTCCTTGCTGTTTGGCTCAAAAAGCGCCCGGGGCTGCTGGAAAAGCGG
GTGGATGTGAGATTCGCTCTCAAGTGCCAAGAGTTCATCGAGCTGGTCAA
GAAGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13663:3443..4300+

>mRNA_L-elsbetiae_contig13663.2787.1 ID=mRNA_L-elsbetiae_contig13663.2787.1|Name=mRNA_L-elsbetiae_contig13663.2787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig13663:3443..4300+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGTCCGACCTCCTCGCCGAAGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GGCAGGGGGGTGCGCAGACCGGCCGCACGTGCCGCCGCGCCGTGGCCCTG
GCGTCCACGCTAGCCCTGAGGACGCGGCTGAGGCGAGAGATCTTGTCCGG
AAAGATCGGCGCGGCCACCGAAGTGCTAAAGAAAGAGGGTGTCCGACCTC
CTCGCCGAAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGCAGGGGGGTGC
GCAGACCGGCCGCACGTGCCGCCGCGCCGTGGCCCTGGCGTCCACGCTAG
CCCTGAGGACGCGGCTGAGGCGAGAGATCTTGTCCGGAAAGATCGGCGCG
GCCACCGAAGTGCTAAAGAAAGAGCGCCCGGGGCTGCTGGAAAAGCGGGT
GGATGTGAGATTCGCTCTCAAGTGCCAAGAGTTCATCGAGCTGGTCAAGA
AGGGCGCCCGGGGCTGCTGGAAAAGCGGGTGGATGTGAGATTCGCTCTCA
AGTGCCAAGAGTTCATCGAGCTGGTCAAGAAGGG
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