mRNA_L-elsbetiae_contig13660.2786.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13660.2786.1
Unique NamemRNA_L-elsbetiae_contig13660.2786.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13660.2786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13660contigL-elsbetiae_contig13660:794..1150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.3401685-CDS-L-elsbetiae_contig13660:793..11081622815531.3401685-CDS-L-elsbetiae_contig13660:793..1108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13660 794..1108 +
1691682943.7188425-CDS-L-elsbetiae_contig13660:793..11081691682943.7188425-CDS-L-elsbetiae_contig13660:793..1108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13660 794..1108 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.3570406-UTR-L-elsbetiae_contig13660:1108..11501622815531.3570406-UTR-L-elsbetiae_contig13660:1108..1150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13660 1109..1150 +
1691682943.7296436-UTR-L-elsbetiae_contig13660:1108..11501691682943.7296436-UTR-L-elsbetiae_contig13660:1108..1150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13660 1109..1150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13660.2786.1prot_L-elsbetiae_contig13660.2786.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13660 794..1108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13660.2786.1

>prot_L-elsbetiae_contig13660.2786.1 ID=prot_L-elsbetiae_contig13660.2786.1|Name=mRNA_L-elsbetiae_contig13660.2786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MNVRESQLDNFLFFSSVDNLLSLLIVAQQVEVRGELKARIQQVVGLYDTI
PYSSRYNYSSESRHEHEHRTLFKDKQINTLLVSTPELHSSQHSPACLHEN
LQVG*
back to top

mRNA from alignment at L-elsbetiae_contig13660:794..1150+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13660.2786.1 ID=mRNA_L-elsbetiae_contig13660.2786.1|Name=mRNA_L-elsbetiae_contig13660.2786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=357bp|location=Sequence derived from alignment at L-elsbetiae_contig13660:794..1150+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATGTACGTGAGAGCCAGTTGGATAATTTTTTATTTTTTTCGAGCGT
TGACAATCTGCTCTCGCTTTTAATAGTGGCGCAGCAGGTGGAGGTCCGGG
GCGAGCTCAAAGCACGAATACAGCAGGTTGTAGGTTTGTATGACACAATC
CCGTACAGCAGTAGATACAACTACTCTTCCGAGTCAAGGCACGAACACGA
GCACCGAACACTCTTTAAAGATAAGCAGATAAACACTCTTCTTGTTTCTA
CCCCCGAACTCCACTCCAGCCAACATTCTCCCGCGTGTTTGCACGAAAAC
TTGCAAGTTGGGTAGACTAGAGCACCTTGGTTTTGTCGACCACACGGAGA
GCAGGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13660:794..1150+

>mRNA_L-elsbetiae_contig13660.2786.1 ID=mRNA_L-elsbetiae_contig13660.2786.1|Name=mRNA_L-elsbetiae_contig13660.2786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig13660:794..1150+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATGTACGTGAGAGCCAGTTGGATAATTTTTTATTTTTTTCGAGCGT
TGACAATCTGCTCTCGCTTTTAATAGTGGCGCAGCAGGTGGAGGTCCGGG
GCGAGCTCAAAGCACGAATACAGCAGGTTGTAGGTTTGTATGACACAATC
CCGTACAGCAGTAGATACAACTACTCTTCCGAGTCAAGGCACGAACACGA
GCACCGAACACTCTTTAAAGATAAGCAGATAAACACTCTTCTTGTTTCTA
CCCCCGAACTCCACTCCAGCCAACATTCTCCCGCGTGTTTGCACGAAAAC
TTGCAAGTTGGGTAGATGAATGTACGTGAGAGCCAGTTGGATAATTTTTT
ATTTTTTTCGAGCGTTGACAATCTGCTCTCGCTTTTAATAGTGGCGCAGC
AGGTGGAGGTCCGGGGCGAGCTCAAAGCACGAATACAGCAGGTTGTAGGT
TTGTATGACACAATCCCGTACAGCAGTAGATACAACTACTCTTCCGAGTC
AAGGCACGAACACGAGCACCGAACACTCTTTAAAGATAAGCAGATAAACA
CTCTTCTTGTTTCTACCCCCGAACTCCACTCCAGCCAACATTCTCCCGCG
TGTTTGCACGAAAACTTGCAAGTTGGGTAG
back to top