mRNA_L-elsbetiae_contig1366.2783.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1366.2783.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 166 bits (419), Expect = 2.760e-45 Identity = 82/112 (73.21%), Postives = 94/112 (83.93%), Query Frame = 1 Query: 1 GNGGMTLSTLNLDRGYYRTSVESQNVLKCHQEDACIGGAETSQYCKEGYRGPYCAVCEEGYASGYQYSCFSCIGENKRLAIGTSIALFLLALIVIALVIAELVGVVDESNTD 336 G+GG+TL LNL RGYYRTS ESQNVLKC+QE+ACIGG + SQYC+EGYRG YCAVC+EGYASGYQ+SC C GEN R AIGTS+ALF +AL+ IALVIA+LV VVDE D Sbjct: 604 GDGGVTLPELNLLRGYYRTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRGAYCAVCDEGYASGYQFSCSICDGENLRSAIGTSVALFFVALVGIALVIADLVRVVDEVEPD 715
BLAST of mRNA_L-elsbetiae_contig1366.2783.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI) HSP 1 Score: 116 bits (291), Expect = 1.820e-28 Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1 Query: 1 GNGGMTLSTLNLDRGYYRTSVESQNVLKCHQEDACIGGAETSQYCKEGYRGPYCAVCEEGYASGYQYSCFSCIGENKRLAIG 246 GN G TL TL+L+ GYYRTS ES +L+CH+E+AC+GG+ +YC GY+G YCA CEEGYASG QYSC SC G+N AIG Sbjct: 381 GNAGTTLQTLDLESGYYRTSAESDIILECHREEACVGGSTAGEYCATGYQGAYCAACEEGYASGLQYSCKSCGGDNATSAIG 462
BLAST of mRNA_L-elsbetiae_contig1366.2783.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.320e-22 Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 1 Query: 10 GMTLSTLNLDRGYYRTSVESQNVLKCHQEDACIGGAETSQYCKEGYRGPYCAVCEEGYASGYQYSCFSCIGENKRLAIGTSIALFLLALIVIALVIAELVGVVDESNT 333 G T++TL+L GYYRTS ESQ V++C+ AC GG + YC +GY GPYC+VC +GYA G Y C C G + A+G + A+V A+LV VVD ++ Sbjct: 578 GTTVATLDLQEGYYRTSAESQVVVECYLTSACAGGTDPKNYCADGYEGPYCSVCADGYAPGTAYQCHECSGTSMGSAVGVAXXXXXXXXXXXAVVAADLVRVVDGDDS 685
BLAST of mRNA_L-elsbetiae_contig1366.2783.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 2.000e-21 Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1 Query: 10 GMTLSTLNLDRGYYRTSVESQNVLKCHQEDACIGGAETSQYCKEGYRGPYCAVCEEGYASGYQYSCFSCIGENKRLAIGTSIALFLLALIVIALVIAELVGVVDESNT 333 G T++TL+L GYYRTS ESQ V++C+ AC GG + YC +GY GPYC+VC +GYA G Y C C G + A+G + A+V +LV VVD + Sbjct: 337 GTTVATLDLQEGYYRTSAESQVVVECYLTGACAGGTDPENYCADGYEGPYCSVCADGYAPGTAYQCHECSGTSMGSAVGLAAXXXXXXXXXXAVVATDLVRVVDGDRS 444
BLAST of mRNA_L-elsbetiae_contig1366.2783.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 4.930e-18 Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 1 Query: 10 GMTLSTLNLDRGYYRTSVESQNVLKCHQEDACIGGAETSQ---YCKEGYRGPYCAVCEEGYASGYQYSCFSCIGENKRLAIGTSIALFLLALIVIALVIAELVGVVD 321 G TL++L + GY+R+ ES + +C AC+G A+ S YC EGY+GPYCAVC EG+ G SC SC G RL I L+ L++I L +A LVG +D Sbjct: 883 GATLASLPVREGYWRSGGESLTIHQCSPSSACVGAAQISSAQDYCGEGYQGPYCAVCAEGFGRGAGNSCHSCEGTKSRLLIAAGSLFALVILLLIILTVAYLVGGLD 989
BLAST of mRNA_L-elsbetiae_contig1366.2783.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 2.330e-17 Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 7 GGMTLSTLNLDRGYYRTSVESQNVLKCHQEDACIGGAE-TSQYCKEGYRGPYCAVCEEGYASGYQYSCFSCIGENKRLAIGTSIALFLL 270 G +TL TL++DRG++R S S VL C+ DAC+GG S YC+EGY GPYC +C +GY ++C C EN I ++ L LL Sbjct: 1047 GNVTLQTLSIDRGFWRASTSSTEVLACYHADACLGGVTGASGYCEEGYEGPYCGICSDGYTEQLSFACSKC-SENSAGGIAVAVVLALL 1134
BLAST of mRNA_L-elsbetiae_contig1366.2783.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 2.050e-16 Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 1 Query: 10 GMTLSTLNLDRGYYRTSVESQNVLKCHQEDACIGGAETSQ---YCKEGYRGPYCAVCEEGYASGYQYSCFSCIGENKRLAIGTSIALFLLALIVIALVIAELVGVVD 321 G TL++L + GY+R+S ES ++ +C AC+G + S YC EGY+GPYC VC EG+ G +C SC G RL I L+ L+++ L + LVG +D Sbjct: 890 GATLASLPIREGYWRSSRESLSIHQCVHHTACVGATQISSAQDYCGEGYQGPYCTVCTEGFGRGAGNTCHSCEGTKSRLLIAAGSLFALVILLLVILAVVYLVGGLD 996
BLAST of mRNA_L-elsbetiae_contig1366.2783.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 2.810e-16 Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 1 Query: 16 TLSTLNLDRGYYRTSVESQNVLKCHQEDACIGGAE-TSQYCKEGYRGPYCAVCEEGYASGYQYSCFSCIGENKRLAIGTSIALFLLALIV 282 TL TL++ GY+R + VL C+ DAC+GG TS YC EGY GPYCA+C EGY++ ++C +C +A+ ++A+ L L+V Sbjct: 1151 TLETLSIQAGYWRATTSGTEVLACYHADACLGGVTGTSGYCLEGYEGPYCAICSEGYSAQMSFTCRTCSDNAGGIALAAALAVVGLVLLV 1240
BLAST of mRNA_L-elsbetiae_contig1366.2783.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 5.170e-16 Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 1 Query: 7 GGMTLSTLNLDRGYYRTSVESQNVLKCHQEDACIGGAE-TSQYCKEGYRGPYCAVCEEGYASGYQYSCFSCIGENK 231 G TL +++DRGY+R + S+ VL+C Q DAC+GG TS YC EGY GPYC++C GY +SC C ENK Sbjct: 764 GNTTLQEVSIDRGYWRATSVSEEVLECFQADACLGGVTGTSGYCLEGYEGPYCSICSGGYTKQLGFSCTKC-SENK 838
BLAST of mRNA_L-elsbetiae_contig1366.2783.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 9.730e-16 Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 1 Query: 7 GGMTLSTLNLDRGYYRTSVESQNVLKCHQEDACIGGAE-TSQYCKEGYRGPYCAVCEEGYASGYQYSCFSCIGENKR-------LAIGTSIAL 261 G +TL L++D GY+R + S++VL C+ +AC+GG TS YC EGY GPYC+VC GY+ + C C +N LA+GT+I L Sbjct: 1158 GNITLEALSIDSGYWRATESSEDVLACYHAEACLGGVTATSGYCLEGYEGPYCSVCSNGYSEQLGFVCSKCPEKNTGGIVILVVLAVGTTIVL 1250 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1366.2783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1366.2783.1 >prot_L-elsbetiae_contig1366.2783.1 ID=prot_L-elsbetiae_contig1366.2783.1|Name=mRNA_L-elsbetiae_contig1366.2783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp MTLSTLNLDRGYYRTSVESQNVLKCHQEDACIGGAETSQYCKEGYRGPYCback to top mRNA from alignment at L-elsbetiae_contig1366:1037..3613- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1366.2783.1 ID=mRNA_L-elsbetiae_contig1366.2783.1|Name=mRNA_L-elsbetiae_contig1366.2783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2577bp|location=Sequence derived from alignment at L-elsbetiae_contig1366:1037..3613- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1366:1037..3613- >mRNA_L-elsbetiae_contig1366.2783.1 ID=mRNA_L-elsbetiae_contig1366.2783.1|Name=mRNA_L-elsbetiae_contig1366.2783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig1366:1037..3613- (Laminarionema elsbetiae ELsaHSoW15)back to top |