mRNA_L-elsbetiae_contig13657.2782.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13657.2782.1
Unique NamemRNA_L-elsbetiae_contig13657.2782.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13657.2782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13657contigL-elsbetiae_contig13657:1454..2382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002800.1
Exons3
Model size330
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13657.2782.1prot_L-elsbetiae_contig13657.2782.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13657 1454..2382 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.051155-CDS-L-elsbetiae_contig13657:1453..15971622815531.051155-CDS-L-elsbetiae_contig13657:1453..1597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13657 1454..1597 -
1691682943.5508258-CDS-L-elsbetiae_contig13657:1453..15971691682943.5508258-CDS-L-elsbetiae_contig13657:1453..1597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13657 1454..1597 -
1622815531.0634093-CDS-L-elsbetiae_contig13657:2094..22291622815531.0634093-CDS-L-elsbetiae_contig13657:2094..2229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13657 2095..2229 -
1691682943.561037-CDS-L-elsbetiae_contig13657:2094..22291691682943.561037-CDS-L-elsbetiae_contig13657:2094..2229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13657 2095..2229 -
1622815531.0738637-CDS-L-elsbetiae_contig13657:2331..23821622815531.0738637-CDS-L-elsbetiae_contig13657:2331..2382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13657 2332..2382 -
1691682943.5740743-CDS-L-elsbetiae_contig13657:2331..23821691682943.5740743-CDS-L-elsbetiae_contig13657:2331..2382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13657 2332..2382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13657.2782.1

>prot_L-elsbetiae_contig13657.2782.1 ID=prot_L-elsbetiae_contig13657.2782.1|Name=mRNA_L-elsbetiae_contig13657.2782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MLLAPPPPPPPPPPSTSPPPPPPPPPQQSPPQPQQQPQQQPPQQHPLAKP
IAERIAAIGPQELETMRCLPDAQTLYPFIFDGHPGFGPFRDTLASLVMPR
LAGSGGAAT*
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mRNA from alignment at L-elsbetiae_contig13657:1454..2382-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13657.2782.1 ID=mRNA_L-elsbetiae_contig13657.2782.1|Name=mRNA_L-elsbetiae_contig13657.2782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=929bp|location=Sequence derived from alignment at L-elsbetiae_contig13657:1454..2382- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTTGCGCCGCCCCCGCCACCACCGCCGCCGCCTCCGTCAACTTC
GGTGTACCCGGCGACCGCGCCGCCGCAACAGCAGCCGCAGCAGCAGCCGC
AGCCACCACAGCAGCCACCACCACAGCAGCAGCAGCAGCAGCAGGTGCCA
CAGCCGCCGCCGCCACCGCCGCCGCCGCCGCAACAGTCGCCGCCGCAGCC
CCAGCAGCAGCCCCAGCAGCAGCCTCCGCAGCAGCACCCGCTGGCCAAGC
CGATTGCGGAGCGTATCGCAGCCATTGGTCCTCAAGAGGTGCGCTTTGAT
GTCGGAACACCTCGTGTTTGTCGCAGCCTGTCAACAGGGGCAGTAGTGAC
ACTAGCGGGGAGGGGGAGGGGTATTAATCGCAGATCCGTCAATGACCTTG
CCCGTGTTTTGACCTTTCGTATGACACTGGCACTACAGTATCTGTTCGTT
TACTTAAGGCATGACGCGAGCAGCTACTGTTGTACATAACAATATATGAG
TAGTTACAATTGTTGCCGGTCTTAGAAAAAGAGTTGTCTCGATTTTTCCA
CGCGCCCCTCGTTTTGTGTTTTGTGCTGAATCCGCAGAGCCCCCCAAAAC
AAGCACACTGGCCGCACGTCACTCACACTCTTGTTCTTTGTAACCCCCGC
TGCGACCCCCCCCATCTCTGCATGGACGGGCACATACATACATACATACA
TGCGGCTACATGCGATTTATTTTAACCAGCCCTAAGTTTAGCCATCCTCC
CTCTGCCCACCATGACATCGTCTCCCCACCGGCAGCTCGAGACGATGCGT
TGTCTCCCTGATGCCCAGACCCTGTACCCGTTCATCTTCGACGGCCATCC
CGGATTCGGACCGTTCCGAGACACGTTGGCTAGTTTGGTCATGCCCCGGT
TGGCAGGTAGCGGCGGTGCGGCCACATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13657:1454..2382-

>mRNA_L-elsbetiae_contig13657.2782.1 ID=mRNA_L-elsbetiae_contig13657.2782.1|Name=mRNA_L-elsbetiae_contig13657.2782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig13657:1454..2382- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTTGCGCCGCCCCCGCCACCACCGCCGCCGCCTCCGTCAACTTC
GATGCTGCTTGCGCCGCCCCCGCCACCACCGCCGCCGCCTCCGTCAACTT
CGCCGCCGCCGCCACCGCCGCCGCCGCCGCAACAGTCGCCGCCGCAGCCC
CAGCAGCAGCCCCAGCAGCAGCCTCCGCAGCAGCACCCGCTGGCCAAGCC
GATTGCGGAGCGTATCGCAGCCATTGGTCCTCAAGAGCCGCCGCCGCCAC
CGCCGCCGCCGCCGCAACAGTCGCCGCCGCAGCCCCAGCAGCAGCCCCAG
CAGCAGCCTCCGCAGCAGCACCCGCTGGCCAAGCCGATTGCGGAGCGTAT
CGCAGCCATTGGTCCTCAAGAGCTCGAGACGATGCGTTGTCTCCCTGATG
CCCAGACCCTGTACCCGTTCATCTTCGACGGCCATCCCGGATTCGGACCG
TTCCGAGACACGTTGGCTAGTTTGGTCATGCCCCGGTTGGCAGGTAGCGG
CGGTGCGGCCACATAACTCGAGACGATGCGTTGTCTCCCTGATGCCCAGA
CCCTGTACCCGTTCATCTTCGACGGCCATCCCGGATTCGGACCGTTCCGA
GACACGTTGGCTAGTTTGGTCATGCCCCGGTTGGCAGGTAGCGGCGGTGC
GGCCACATAA
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