mRNA_L-elsbetiae_contig13656.2780.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13656.2780.1
Unique NamemRNA_L-elsbetiae_contig13656.2780.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13656.2780.1 vs. uniprot
Match: D7FV08_ECTSI (FeS_assembly_P domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV08_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.680e-12
Identity = 35/45 (77.78%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 RFMPATTVRISAVNKQLGDKERVAAALENAHLMAVVNKCTSPAAA 135
            R  P T     AVNKQLGDKERVAAALEN HLMAVVNKCTS AAA
Sbjct:   72 RIAPGTHSSEEAVNKQLGDKERVAAALENQHLMAVVNKCTSTAAA 116
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BLAST of mRNA_L-elsbetiae_contig13656.2780.1 vs. uniprot
Match: B7PEZ3_IXOSC (FeS_assembly_P domain-containing protein n=6 Tax=Ixodes TaxID=6944 RepID=B7PEZ3_IXOSC)

HSP 1 Score: 55.5 bits (132), Expect = 6.650e-9
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 RFMPATTVRISAVNKQLGDKERVAAALENAHLMAVVNKCTSP 126
            R +P T V   A+NKQL DKERVAAALEN+HL+ VVN+C  P
Sbjct:   41 RILPGTHVSEVAINKQLDDKERVAAALENSHLLQVVNRCLVP 82
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BLAST of mRNA_L-elsbetiae_contig13656.2780.1 vs. uniprot
Match: UPI001896D78A (cytosolic iron-sulfur assembly component 2B-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI001896D78A)

HSP 1 Score: 56.2 bits (134), Expect = 1.170e-8
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 RFMPATTVRISAVNKQLGDKERVAAALENAHLMAVVNKC 117
            R +P T V  SA+NKQL DKERVAAALEN+HL+ VVN+C
Sbjct:  100 RILPGTHVSESAINKQLDDKERVAAALENSHLLQVVNRC 138
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BLAST of mRNA_L-elsbetiae_contig13656.2780.1 vs. uniprot
Match: A0A418B6Y3_9STRA (FeS_assembly_P domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B6Y3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.490e-8
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 RFMPATTVRISAVNKQLGDKERVAAALENAHLMAVVNKC 117
            R  P T +   A+NKQL DKERVAAALENAHL+ VVNKC
Sbjct:   75 RITPGTHITEDAINKQLNDKERVAAALENAHLLNVVNKC 113
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BLAST of mRNA_L-elsbetiae_contig13656.2780.1 vs. uniprot
Match: A0A1Z5L725_ORNMO (FeS_assembly_P domain-containing protein (Fragment) n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A1Z5L725_ORNMO)

HSP 1 Score: 55.8 bits (133), Expect = 2.080e-8
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 RFMPATTVRISAVNKQLGDKERVAAALENAHLMAVVNKCTS 123
            +  P T    +A+NKQL DKERVAAALEN+HL+AVVNKC S
Sbjct:  115 KITPGTHASEAAINKQLSDKERVAAALENSHLLAVVNKCLS 155
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BLAST of mRNA_L-elsbetiae_contig13656.2780.1 vs. uniprot
Match: A0A485LGM1_9STRA (Aste57867_21091 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGM1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.830e-8
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 RFMPATTVRISAVNKQLGDKERVAAALENAHLMAVVNKC 117
            R  P T +   A+NKQL DKERVAAALENAHL+ VVNKC
Sbjct:  109 RITPGTHITEDAINKQLNDKERVAAALENAHLLNVVNKC 147
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BLAST of mRNA_L-elsbetiae_contig13656.2780.1 vs. uniprot
Match: A0A067D6V7_SAPPC (FeS_assembly_P domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D6V7_SAPPC)

HSP 1 Score: 55.5 bits (132), Expect = 3.020e-8
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 RFMPATTVRISAVNKQLGDKERVAAALENAHLMAVVNKC 117
            R  P T +   A+NKQL DKERVAAALENAHL+ VVNKC
Sbjct:  113 RITPGTHITEDAINKQLNDKERVAAALENAHLLNVVNKC 151
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BLAST of mRNA_L-elsbetiae_contig13656.2780.1 vs. uniprot
Match: A0A3R7M3C3_PENVA (FeS_assembly_P domain-containing protein n=3 Tax=Penaeus TaxID=133894 RepID=A0A3R7M3C3_PENVA)

HSP 1 Score: 55.5 bits (132), Expect = 3.020e-8
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 RFMPATTVRISAVNKQLGDKERVAAALENAHLMAVVNKCTSP 126
            R  P T     A+NKQL DKERVAAALEN+HL+ V+NKC +P
Sbjct:  115 RISPGTHASEHAINKQLNDKERVAAALENSHLLEVINKCLNP 156
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BLAST of mRNA_L-elsbetiae_contig13656.2780.1 vs. uniprot
Match: A0A6G0XVQ6_9STRA (FeS_assembly_P domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVQ6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.120e-8
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 RFMPATTVRISAVNKQLGDKERVAAALENAHLMAVVNKC 117
            R  P T +   A+NKQL DKERVAAALENAHL+ VVNKC
Sbjct:  115 RITPGTHITEDAINKQLNDKERVAAALENAHLLNVVNKC 153
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BLAST of mRNA_L-elsbetiae_contig13656.2780.1 vs. uniprot
Match: A0A835CRM0_9HYME (FeS_assembly_P domain-containing protein n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=A0A835CRM0_9HYME)

HSP 1 Score: 54.7 bits (130), Expect = 5.880e-8
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   10 PATTVRISAVNKQLGDKERVAAALENAHLMAVVNKCTS 123
            P T V   AVNKQL DKERVAAALEN+HL+AV+N+C S
Sbjct:  116 PGTHVSEQAVNKQLADKERVAAALENSHLVAVINQCVS 153
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13656.2780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV08_ECTSI5.680e-1277.78FeS_assembly_P domain-containing protein n=1 Tax=E... [more]
B7PEZ3_IXOSC6.650e-964.29FeS_assembly_P domain-containing protein n=6 Tax=I... [more]
UPI001896D78A1.170e-869.23cytosolic iron-sulfur assembly component 2B-like n... [more]
A0A418B6Y3_9STRA1.490e-869.23FeS_assembly_P domain-containing protein n=1 Tax=A... [more]
A0A1Z5L725_ORNMO2.080e-865.85FeS_assembly_P domain-containing protein (Fragment... [more]
A0A485LGM1_9STRA2.830e-869.23Aste57867_21091 protein n=1 Tax=Aphanomyces stella... [more]
A0A067D6V7_SAPPC3.020e-869.23FeS_assembly_P domain-containing protein n=3 Tax=S... [more]
A0A3R7M3C3_PENVA3.020e-861.90FeS_assembly_P domain-containing protein n=3 Tax=P... [more]
A0A6G0XVQ6_9STRA3.120e-869.23FeS_assembly_P domain-containing protein n=1 Tax=A... [more]
A0A835CRM0_9HYME5.880e-871.05FeS_assembly_P domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13656contigL-elsbetiae_contig13656:521..661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue4.8e-08
Seed eggNOG ortholog2880.D7FV08
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0019538,GO:0022607,GO:0031163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0051186,GO:0051604,GO:0071704,GO:0071840,GO:0097428,GO:0106035,GO:1901564
EggNOG free text desc.chromosome segregation
EggNOG OGsCOG5133@1,KOG3381@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size141
Cds size135
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.0033813-CDS-L-elsbetiae_contig13656:520..6551622815531.0033813-CDS-L-elsbetiae_contig13656:520..655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13656 521..655 -
1691682943.5291517-CDS-L-elsbetiae_contig13656:520..6551691682943.5291517-CDS-L-elsbetiae_contig13656:520..655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13656 521..655 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.0141904-UTR-L-elsbetiae_contig13656:655..6611622815531.0141904-UTR-L-elsbetiae_contig13656:655..661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13656 656..661 -
1691682943.5400922-UTR-L-elsbetiae_contig13656:655..6611691682943.5400922-UTR-L-elsbetiae_contig13656:655..661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13656 656..661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13656.2780.1prot_L-elsbetiae_contig13656.2780.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13656 521..655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13656.2780.1

>prot_L-elsbetiae_contig13656.2780.1 ID=prot_L-elsbetiae_contig13656.2780.1|Name=mRNA_L-elsbetiae_contig13656.2780.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp
MPATTVRISAVNKQLGDKERVAAALENAHLMAVVNKCTSPAAAE*
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mRNA from alignment at L-elsbetiae_contig13656:521..661-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13656.2780.1 ID=mRNA_L-elsbetiae_contig13656.2780.1|Name=mRNA_L-elsbetiae_contig13656.2780.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=141bp|location=Sequence derived from alignment at L-elsbetiae_contig13656:521..661- (Laminarionema elsbetiae ELsaHSoW15)
CGTTTTATGCCTGCGACGACCGTACGTATTTCGGCAGTGAATAAGCAGCT
GGGCGATAAGGAACGAGTGGCAGCGGCCCTGGAAAACGCACACCTGATGG
CGGTAGTCAATAAGTGCACATCACCTGCCGCTGCCGAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13656:521..661-

>mRNA_L-elsbetiae_contig13656.2780.1 ID=mRNA_L-elsbetiae_contig13656.2780.1|Name=mRNA_L-elsbetiae_contig13656.2780.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig13656:521..661- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGCGACGACCGTACGTATTTCGGCAGTGAATAAGCAGCTGGGCGA
TAAGGAACGAGTGGCAGCGGCCCTGGAAAACGCACACCTGATGGCGGTAG
TCAATAAGTGCACATCACCTGCCGCTGCCGAGTGAATGCCTGCGACGACC
GTACGTATTTCGGCAGTGAATAAGCAGCTGGGCGATAAGGAACGAGTGGC
AGCGGCCCTGGAAAACGCACACCTGATGGCGGTAGTCAATAAGTGCACAT
CACCTGCCGCTGCCGAGTGA
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