mRNA_L-elsbetiae_contig13631.2766.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13631.2766.1
Unique NamemRNA_L-elsbetiae_contig13631.2766.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13631.2766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13631contigL-elsbetiae_contig13631:3817..4816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-05_005430.1
Exons2
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.7937503-CDS-L-elsbetiae_contig13631:3816..39451622815529.7937503-CDS-L-elsbetiae_contig13631:3816..3945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13631 3817..3945 -
1691682942.7817538-CDS-L-elsbetiae_contig13631:3816..39451691682942.7817538-CDS-L-elsbetiae_contig13631:3816..3945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13631 3817..3945 -
1622815529.8050978-CDS-L-elsbetiae_contig13631:4567..48161622815529.8050978-CDS-L-elsbetiae_contig13631:4567..4816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13631 4568..4816 -
1691682942.7949061-CDS-L-elsbetiae_contig13631:4567..48161691682942.7949061-CDS-L-elsbetiae_contig13631:4567..4816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13631 4568..4816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13631.2766.1prot_L-elsbetiae_contig13631.2766.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13631 3817..4816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13631.2766.1

>prot_L-elsbetiae_contig13631.2766.1 ID=prot_L-elsbetiae_contig13631.2766.1|Name=mRNA_L-elsbetiae_contig13631.2766.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
AKGGHLEILQWARSAGCPWGWNTFASAALGGHLDVLTWLLANGCPWSSEA
SQRAARGGHLAVLQWLDANGCDLCSSICSEAAKGGHLDVIKWARVRGLPW
RTTCLEAALGGHLDVLGWARAHGAPW
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mRNA from alignment at L-elsbetiae_contig13631:3817..4816-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13631.2766.1 ID=mRNA_L-elsbetiae_contig13631.2766.1|Name=mRNA_L-elsbetiae_contig13631.2766.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1000bp|location=Sequence derived from alignment at L-elsbetiae_contig13631:3817..4816- (Laminarionema elsbetiae ELsaHSoW15)
GCAAAGGGAGGCCACCTCGAGATCCTGCAGTGGGCCCGCTCTGCCGGGTG
CCCGTGGGGATGGAACACCTTCGCTTCGGCGGCGCTTGGGGGGCATCTGG
ACGTCCTGACCTGGCTGCTGGCGAACGGGTGCCCGTGGTCCTCCGAGGCG
TCCCAGCGGGCCGCGAGGGGCGGGCATTTGGCGGTCCTGCAATGGTTGGA
TGCGAATGGCTGCGACTTGTGTTCCTCCATCTGCAGCGAAGCGGCGAAGG
TGCGGAGGTCGCGCCTAGAGTCTCTCTCTCTTTTGTCTCTCTCTCTCTCT
CTCTTAGGCTTTCTGCAATAGAGCCAGCCCTCAATTATTATTATTATTAT
TACGTTTGCCATCCGACAATTGCAGATTCCTTCAATATACGCACACAACA
TATCATCCGTACTTGTACCAACACGCGAAAGAAAACGCCTTATATAACCT
CTGACATATAACATCAACATTCTTAGCCAGCCCTCAATTCTCGAAAAGAG
CTGTGGGGGCAGCGGGGGGGGGGAGGGGGGGGGTATTTATCTAGGAAAGA
GAGTGGAAAATCCCCCACGGTGCCACTTTTTCAGAAATGGGGCCCTGCTG
CAGGAAAAGAAAATCACATTTTCTAATGTAGGGGGGGCATAATCTGGACT
TGGAGGAATGGGCCAAAGTTAGGGGACGGGCGCACTCCGTTTTTTTCGAA
CGATTTTATTTATCTTTGTCTTCACCTCCGGTCGTACACCCTTTGTGAGG
GTACACACAGTAGTGGCGTTGTAATCGAGTGGTTTGTTTCTATCCTGGGG
GGCGTTTGCATAGTGACAACGATTCTCTTTTTTTTTTTTTTTTCTACATA
CAACCTCACTGTCCTATCCAGGGAGGGCATCTCGACGTCATCAAATGGGC
CAGGGTGAGGGGACTCCCCTGGCGAACCACTTGCCTCGAGGCGGCGCTTG
GGGGGCACCTCGATGTCCTTGGCTGGGCGAGAGCACACGGAGCCCCGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13631:3817..4816-

>mRNA_L-elsbetiae_contig13631.2766.1 ID=mRNA_L-elsbetiae_contig13631.2766.1|Name=mRNA_L-elsbetiae_contig13631.2766.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig13631:3817..4816- (Laminarionema elsbetiae ELsaHSoW15)
GCAAAGGGAGGCCACCTCGAGATCCTGCAGTGGGCCCGCTCTGCCGGGTG
CCCGTGGGGATGGAACACCTTCGCTTCGGCGGCGCTTGGGGGGCATCTGG
ACGTCCTGACCTGGCTGCTGGCGAACGGGTGCCCGTGGTCCTCCGAGGCG
TCCCAGCGGGCCGCGAGGGGCGGGCATTTGGCGGTCCTGCAATGGTTGGA
TGCGAATGGCTGCGACTTGTGTTCCTCCATCTGCAGCGAAGCGGCGAAGG
CAAAGGGAGGCCACCTCGAGATCCTGCAGTGGGCCCGCTCTGCCGGGTGC
CCGTGGGGATGGAACACCTTCGCTTCGGCGGCGCTTGGGGGGCATCTGGA
CGTCCTGACCTGGCTGCTGGCGAACGGGTGCCCGTGGTCCTCCGAGGCGT
CCCAGCGGGCCGCGAGGGGCGGGCATTTGGCGGTCCTGCAATGGTTGGAT
GCGAATGGCTGCGACTTGTGTTCCTCCATCTGCAGCGAAGCGGCGAAGGG
AGGGCATCTCGACGTCATCAAATGGGCCAGGGTGAGGGGACTCCCCTGGC
GAACCACTTGCCTCGAGGCGGCGCTTGGGGGGCACCTCGATGTCCTTGGC
TGGGCGAGAGCACACGGAGCCCCGTGGGGAGGGCATCTCGACGTCATCAA
ATGGGCCAGGGTGAGGGGACTCCCCTGGCGAACCACTTGCCTCGAGGCGG
CGCTTGGGGGGCACCTCGATGTCCTTGGCTGGGCGAGAGCACACGGAGCC
CCGTGG
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