mRNA_L-elsbetiae_contig13623.2760.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13623.2760.1
Unique NamemRNA_L-elsbetiae_contig13623.2760.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13623.2760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13623contigL-elsbetiae_contig13623:3187..3722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size536
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13623.2760.1prot_L-elsbetiae_contig13623.2760.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13623 3285..3623 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.2056587-UTR-L-elsbetiae_contig13623:3186..32841622815529.2056587-UTR-L-elsbetiae_contig13623:3186..3284Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13623 3187..3284 +
1691682942.4656584-UTR-L-elsbetiae_contig13623:3186..32841691682942.4656584-UTR-L-elsbetiae_contig13623:3186..3284Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13623 3187..3284 +
1622815529.2285151-UTR-L-elsbetiae_contig13623:3623..37221622815529.2285151-UTR-L-elsbetiae_contig13623:3623..3722Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13623 3624..3722 +
1691682942.4840899-UTR-L-elsbetiae_contig13623:3623..37221691682942.4840899-UTR-L-elsbetiae_contig13623:3623..3722Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13623 3624..3722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.2171214-CDS-L-elsbetiae_contig13623:3284..36231622815529.2171214-CDS-L-elsbetiae_contig13623:3284..3623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13623 3285..3623 +
1691682942.4759204-CDS-L-elsbetiae_contig13623:3284..36231691682942.4759204-CDS-L-elsbetiae_contig13623:3284..3623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13623 3285..3623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13623.2760.1

>prot_L-elsbetiae_contig13623.2760.1 ID=prot_L-elsbetiae_contig13623.2760.1|Name=mRNA_L-elsbetiae_contig13623.2760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MGKGRKNDLCRGMPRGQRGPVSTVALRRGTLITIIFPKDLETSPRISVLP
AFFDFESPRNLRSAKKSIPRESRADPLHFFSYTLERCRSYRSFTSSSPGT
NSENRRKLIRIN*
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mRNA from alignment at L-elsbetiae_contig13623:3187..3722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13623.2760.1 ID=mRNA_L-elsbetiae_contig13623.2760.1|Name=mRNA_L-elsbetiae_contig13623.2760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=536bp|location=Sequence derived from alignment at L-elsbetiae_contig13623:3187..3722+ (Laminarionema elsbetiae ELsaHSoW15)
CTAGAGCTCAGCGACCGTGTTGCTCTCTCGTTCTTGTAGCCGTGGGATCC
TCTTGAGCACCGTCGCACAAGTTGTTGCGCTGGCGAAGAGTGTGGAAAAT
GGGAAAAGGAAGGAAGAATGACTTGTGTAGGGGTATGCCCCGGGGCCAAC
GGGGGCCCGTTTCTACGGTGGCTTTACGTAGAGGTACCCTAATCACAATC
ATCTTCCCGAAAGATCTAGAAACATCCCCCCGGATTTCAGTACTTCCAGC
TTTTTTTGACTTCGAGTCCCCGAGGAACTTGCGATCAGCGAAGAAATCCA
TACCCCGGGAATCGAGAGCCGATCCGCTGCATTTCTTTTCCTATACCCTC
GAGAGGTGCAGGAGCTACAGGTCGTTCACTTCCTCGTCACCAGGCACTAA
CAGCGAGAACCGACGAAAACTAATCCGAATTAATTAACACCTGCCCACTT
GACAGCAGAGAGTCCGCATGTTCAACCCAGAGGGTGCGTACAACACGGCT
GGTGTATCTGCATGAGGCCAAGCTATACACATTGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13623:3187..3722+

>mRNA_L-elsbetiae_contig13623.2760.1 ID=mRNA_L-elsbetiae_contig13623.2760.1|Name=mRNA_L-elsbetiae_contig13623.2760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig13623:3187..3722+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAAAGGAAGGAAGAATGACTTGTGTAGGGGTATGCCCCGGGGCCA
ACGGGGGCCCGTTTCTACGGTGGCTTTACGTAGAGGTACCCTAATCACAA
TCATCTTCCCGAAAGATCTAGAAACATCCCCCCGGATTTCAGTACTTCCA
GCTTTTTTTGACTTCGAGTCCCCGAGGAACTTGCGATCAGCGAAGAAATC
CATACCCCGGGAATCGAGAGCCGATCCGCTGCATTTCTTTTCCTATACCC
TCGAGAGGTGCAGGAGCTACAGGTCGTTCACTTCCTCGTCACCAGGCACT
AACAGCGAGAACCGACGAAAACTAATCCGAATTAATTAAATGGGAAAAGG
AAGGAAGAATGACTTGTGTAGGGGTATGCCCCGGGGCCAACGGGGGCCCG
TTTCTACGGTGGCTTTACGTAGAGGTACCCTAATCACAATCATCTTCCCG
AAAGATCTAGAAACATCCCCCCGGATTTCAGTACTTCCAGCTTTTTTTGA
CTTCGAGTCCCCGAGGAACTTGCGATCAGCGAAGAAATCCATACCCCGGG
AATCGAGAGCCGATCCGCTGCATTTCTTTTCCTATACCCTCGAGAGGTGC
AGGAGCTACAGGTCGTTCACTTCCTCGTCACCAGGCACTAACAGCGAGAA
CCGACGAAAACTAATCCGAATTAATTAA
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