mRNA_L-elsbetiae_contig13620.2758.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13620.2758.1
Unique NamemRNA_L-elsbetiae_contig13620.2758.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13620.2758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13620contigL-elsbetiae_contig13620:3794..4307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size514
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.083287-UTR-L-elsbetiae_contig13620:3793..39561622815529.083287-UTR-L-elsbetiae_contig13620:3793..3956Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13620 3794..3956 +
1691682942.3952606-UTR-L-elsbetiae_contig13620:3793..39561691682942.3952606-UTR-L-elsbetiae_contig13620:3793..3956Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13620 3794..3956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.097144-CDS-L-elsbetiae_contig13620:3956..43071622815529.097144-CDS-L-elsbetiae_contig13620:3956..4307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13620 3957..4307 +
1691682942.411117-CDS-L-elsbetiae_contig13620:3956..43071691682942.411117-CDS-L-elsbetiae_contig13620:3956..4307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13620 3957..4307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13620.2758.1prot_L-elsbetiae_contig13620.2758.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13620 3957..4307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13620.2758.1

>prot_L-elsbetiae_contig13620.2758.1 ID=prot_L-elsbetiae_contig13620.2758.1|Name=mRNA_L-elsbetiae_contig13620.2758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MSQGVLWWAIVMFWYTLYSRSIFSSVQSLLLLGVKSLGFTFEQSPGGVLS
LCHRNRENIFQNPGLIVGIFDNWVLWIIWHRAGWCGGDVRLFECDVMAFF
LWFQDKISVSRPRAGSD
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mRNA from alignment at L-elsbetiae_contig13620:3794..4307+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13620.2758.1 ID=mRNA_L-elsbetiae_contig13620.2758.1|Name=mRNA_L-elsbetiae_contig13620.2758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=514bp|location=Sequence derived from alignment at L-elsbetiae_contig13620:3794..4307+ (Laminarionema elsbetiae ELsaHSoW15)
CATCCCTCCTCCCCCTTTTTCCCCACCCGCGTAGATTCGTGTGTGCACAC ACCGTTCGGCACCTTTTGACGCAGCCGGTGCTGCGTTTGCCCTCGTCTGA AAATGACCTGTATCTGTTGATGCACATCACGTCCGGCTGGTAAGGTAGTT GTAGTAATACTCCATGAGTCAGGGGGTGTTGTGGTGGGCGATAGTTATGT TTTGGTATACTTTATACAGCAGGAGTATTTTTAGTTCAGTTCAGTCTCTG CTGCTGCTGGGCGTCAAGTCCCTTGGCTTCACCTTTGAACAGAGCCCCGG GGGGGTGCTCTCGCTTTGTCATCGGAACCGTGAAAATATTTTCCAAAATC CTGGATTGATCGTAGGGATTTTTGATAATTGGGTTCTGTGGATAATATGG CATCGCGCGGGGTGGTGTGGTGGTGACGTTCGTCTCTTTGAATGTGACGT CATGGCGTTTTTTCTTTGGTTTCAAGATAAAATATCAGTCAGTCGGCCGC GAGCGGGTTCGGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13620:3794..4307+

>mRNA_L-elsbetiae_contig13620.2758.1 ID=mRNA_L-elsbetiae_contig13620.2758.1|Name=mRNA_L-elsbetiae_contig13620.2758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig13620:3794..4307+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTCAGGGGGTGTTGTGGTGGGCGATAGTTATGTTTTGGTATACTTT
ATACAGCAGGAGTATTTTTAGTTCAGTTCAGTCTCTGCTGCTGCTGGGCG
TCAAGTCCCTTGGCTTCACCTTTGAACAGAGCCCCGGGGGGGTGCTCTCG
CTTTGTCATCGGAACCGTGAAAATATTTTCCAAAATCCTGGATTGATCGT
AGGGATTTTTGATAATTGGGTTCTGTGGATAATATGGCATCGCGCGGGGT
GGTGTGGTGGTGACGTTCGTCTCTTTGAATGTGACGTCATGGCGTTTTTT
CTTTGGTTTCAAGATAAAATATCAGTCAGTCGGCCGCGAGCGGGTTCGGA
TATGAGTCAGGGGGTGTTGTGGTGGGCGATAGTTATGTTTTGGTATACTT
TATACAGCAGGAGTATTTTTAGTTCAGTTCAGTCTCTGCTGCTGCTGGGC
GTCAAGTCCCTTGGCTTCACCTTTGAACAGAGCCCCGGGGGGGTGCTCTC
GCTTTGTCATCGGAACCGTGAAAATATTTTCCAAAATCCTGGATTGATCG
TAGGGATTTTTGATAATTGGGTTCTGTGGATAATATGGCATCGCGCGGGG
TGGTGTGGTGGTGACGTTCGTCTCTTTGAATGTGACGTCATGGCGTTTTT
TCTTTGGTTTCAAGATAAAATATCAGTCAGTCGGCCGCGAGCGGGTTCGG
AT
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