mRNA_L-elsbetiae_contig13620.2757.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13620.2757.1
Unique NamemRNA_L-elsbetiae_contig13620.2757.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13620.2757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13620contigL-elsbetiae_contig13620:2201..3433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1185
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13620.2757.1prot_L-elsbetiae_contig13620.2757.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13620 2732..3415 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.9959838-UTR-L-elsbetiae_contig13620:2200..25841622815528.9959838-UTR-L-elsbetiae_contig13620:2200..2584Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13620 2201..2584 -
1691682942.352634-UTR-L-elsbetiae_contig13620:2200..25841691682942.352634-UTR-L-elsbetiae_contig13620:2200..2584Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13620 2201..2584 -
1622815529.0103996-UTR-L-elsbetiae_contig13620:2632..27311622815529.0103996-UTR-L-elsbetiae_contig13620:2632..2731Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13620 2633..2731 -
1691682942.361488-UTR-L-elsbetiae_contig13620:2632..27311691682942.361488-UTR-L-elsbetiae_contig13620:2632..2731Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13620 2633..2731 -
1622815529.0435216-UTR-L-elsbetiae_contig13620:3415..34331622815529.0435216-UTR-L-elsbetiae_contig13620:3415..3433Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13620 3416..3433 -
1691682942.3830013-UTR-L-elsbetiae_contig13620:3415..34331691682942.3830013-UTR-L-elsbetiae_contig13620:3415..3433Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13620 3416..3433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.0248115-CDS-L-elsbetiae_contig13620:2731..34151622815529.0248115-CDS-L-elsbetiae_contig13620:2731..3415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13620 2732..3415 -
1691682942.3732858-CDS-L-elsbetiae_contig13620:2731..34151691682942.3732858-CDS-L-elsbetiae_contig13620:2731..3415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13620 2732..3415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13620.2757.1

>prot_L-elsbetiae_contig13620.2757.1 ID=prot_L-elsbetiae_contig13620.2757.1|Name=mRNA_L-elsbetiae_contig13620.2757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=228bp
MRKHVHIPNHTKDSFIDWLRPAISCYILFSRPALPRFHSSTHVSPACLIP
HLTSFCFRLKPPENSKHQRTAAAAGAPSHRNRHKQTKLCYYRETDNNRYT
QTKQKNYSYKPRITHSAGLRSPLLPTPLHTSLRPCSLSLSLSFLSPPNLF
VSRLRAPQWRTSYTTRKHRPGRKATEGGRGQDTRKKKITAEVVNGDKYDW
NKGGRQARPKKKIIVLLGSTILLFDPP*
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mRNA from alignment at L-elsbetiae_contig13620:2201..3433-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13620.2757.1 ID=mRNA_L-elsbetiae_contig13620.2757.1|Name=mRNA_L-elsbetiae_contig13620.2757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1233bp|location=Sequence derived from alignment at L-elsbetiae_contig13620:2201..3433- (Laminarionema elsbetiae ELsaHSoW15)
CCCCGCCCGATCTCTCTCATGAGAAAACACGTACATATACCAAACCACAC
AAAAGACAGCTTTATAGACTGGCTGCGCCCCGCCATTTCTTGTTATATTC
TGTTCAGCCGGCCCGCTTTGCCTCGCTTTCACTCTTCCACGCACGTTTCT
CCTGCCTGCCTCATCCCCCACCTCACCTCTTTTTGTTTCAGGCTCAAGCC
GCCGGAAAACAGCAAACATCAGCGCACAGCAGCAGCAGCAGGAGCACCCT
CACACAGAAACCGACATAAGCAGACGAAACTCTGCTACTACAGGGAGACG
GACAACAACAGATACACACAAACAAAACAAAAAAACTACTCCTACAAACC
AAGGATCACACACAGCGCTGGCCTGCGATCACCACTTCTACCTACCCCGC
TACACACCAGCCTGCGGCCGTGCTCTCTTTCTCTCTCGCTCTCCTTTCTC
TCCCCCCCCAACCTCTTCGTATCTCGTCTTCGTGCGCCGCAATGGCGAAC
GTCATACACAACACGGAAACACCGCCCGGGGAGAAAAGCGACAGAAGGAG
GGCGCGGCCAAGACACGCGAAAAAAAAAAATTACAGCAGAAGTGGTGAAT
GGAGATAAATATGACTGGAACAAAGGAGGCAGGCAGGCGCGCCCGAAAAA
AAAGATTATAGTCTTACTCGGGAGTACCATACTTTTGTTTGATCCACCTT
GAAAATTCGTGTGCGCGGTAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAG
CAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCA
GGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAGG
CAGACGCCGCGCCACCTCCTTGTCGATCGTAACGCTAATGGACGACGACT
CTGCATGCGCGTCAACGCGCATCCGGATTAACTTCGCCAAAACCCGGAAA
ACAGACAAAAAAAAAAACAAGACTTTTACTTGTAATTGATCTTGGGAAAA
AAGGCAGGCAAATCCTGCCGCCCTTTTCATTCCCTATGTACTCCCAGCGA
GCGCCCAATCCATTTTTTTTATTGTTCTGTCTAATTAATCACGTTCTTTC
AACGGCAGAGCAAAAATGGGGCTGACTTATATCTCCTAATGTTAATTATA
ATAGTCACCCCCGAAAAAAAAAAACACAGAAAACCATCCCTGCTCTCATT
CATCCACCGCCCCCGCTGCTGCTGCTGCCGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13620:2201..3433-

>mRNA_L-elsbetiae_contig13620.2757.1 ID=mRNA_L-elsbetiae_contig13620.2757.1|Name=mRNA_L-elsbetiae_contig13620.2757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1368bp|location=Sequence derived from alignment at L-elsbetiae_contig13620:2201..3433- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAAAACACGTACATATACCAAACCACACAAAAGACAGCTTTATAGA
CTGGCTGCGCCCCGCCATTTCTTGTTATATTCTGTTCAGCCGGCCCGCTT
TGCCTCGCTTTCACTCTTCCACGCACGTTTCTCCTGCCTGCCTCATCCCC
CACCTCACCTCTTTTTGTTTCAGGCTCAAGCCGCCGGAAAACAGCAAACA
TCAGCGCACAGCAGCAGCAGCAGGAGCACCCTCACACAGAAACCGACATA
AGCAGACGAAACTCTGCTACTACAGGGAGACGGACAACAACAGATACACA
CAAACAAAACAAAAAAACTACTCCTACAAACCAAGGATCACACACAGCGC
TGGCCTGCGATCACCACTTCTACCTACCCCGCTACACACCAGCCTGCGGC
CGTGCTCTCTTTCTCTCTCGCTCTCCTTTCTCTCCCCCCCCAACCTCTTC
GTATCTCGTCTTCGTGCGCCGCAATGGCGAACGTCATACACAACACGGAA
ACACCGCCCGGGGAGAAAAGCGACAGAAGGAGGGCGCGGCCAAGACACGC
GAAAAAAAAAAATTACAGCAGAAGTGGTGAATGGAGATAAATATGACTGG
AACAAAGGAGGCAGGCAGGCGCGCCCGAAAAAAAAGATTATAGTCTTACT
CGGGAGTACCATACTTTTGTTTGATCCACCTTGAATGAGAAAACACGTAC
ATATACCAAACCACACAAAAGACAGCTTTATAGACTGGCTGCGCCCCGCC
ATTTCTTGTTATATTCTGTTCAGCCGGCCCGCTTTGCCTCGCTTTCACTC
TTCCACGCACGTTTCTCCTGCCTGCCTCATCCCCCACCTCACCTCTTTTT
GTTTCAGGCTCAAGCCGCCGGAAAACAGCAAACATCAGCGCACAGCAGCA
GCAGCAGGAGCACCCTCACACAGAAACCGACATAAGCAGACGAAACTCTG
CTACTACAGGGAGACGGACAACAACAGATACACACAAACAAAACAAAAAA
ACTACTCCTACAAACCAAGGATCACACACAGCGCTGGCCTGCGATCACCA
CTTCTACCTACCCCGCTACACACCAGCCTGCGGCCGTGCTCTCTTTCTCT
CTCGCTCTCCTTTCTCTCCCCCCCCAACCTCTTCGTATCTCGTCTTCGTG
CGCCGCAATGGCGAACGTCATACACAACACGGAAACACCGCCCGGGGAGA
AAAGCGACAGAAGGAGGGCGCGGCCAAGACACGCGAAAAAAAAAAATTAC
AGCAGAAGTGGTGAATGGAGATAAATATGACTGGAACAAAGGAGGCAGGC
AGGCGCGCCCGAAAAAAAAGATTATAGTCTTACTCGGGAGTACCATACTT
TTGTTTGATCCACCTTGA
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