mRNA_L-elsbetiae_contig13611.2751.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13611.2751.1
Unique NamemRNA_L-elsbetiae_contig13611.2751.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13611.2751.1 vs. uniprot
Match: A0A6H5JLY7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY7_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 8.070e-38
Identity = 73/100 (73.00%), Postives = 79/100 (79.00%), Query Frame = 3 
Query:  306 SCLQFKGVCLTVHQQSFAKHNTFFLHKLNVIKFDRFAFMVVLINEIEN*AINRKTVASLVKRVLGHDSNRLKVCMTEVWFCGRCFCAMRLMRHFDQFGRV 605
            SC Q  GVCLTVH+ + A+   F LH LN +KFDRFAFMVVLINE EN AINRKTVA LV+RVLGH S+RLKVCM EVWFCGRCFC   LMR FDQ GRV
Sbjct:  101 SCKQLSGVCLTVHEHNHAEKKKF-LHMLNAMKFDRFAFMVVLINETENEAINRKTVAGLVQRVLGHSSDRLKVCMVEVWFCGRCFCKNPLMRSFDQVGRV 199
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BLAST of mRNA_L-elsbetiae_contig13611.2751.1 vs. uniprot
Match: A0A6H5KKU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU6_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.190e-34
Identity = 74/101 (73.27%), Postives = 78/101 (77.23%), Query Frame = 3 
Query:  306 SCLQFKGVCLTVHQQSFAKHNTFFLHKLNVIKFDRFAFMVVLINEIEN*AINRKTVASLVKRVLGHDSNRLKVCMTEVWFCGRCFCAMRLMRHFDQFGRVF 608
            SC Q  GVCLTVH+ + AK   F LH LNV+KFDRFAFMV LINE EN  INRKTV + VKRVLGH S RLKVCM EVWFCGRCFC   LMR FDQFGRVF
Sbjct:  798 SCRQLSGVCLTVHEHNHAKKKKF-LHMLNVMKFDRFAFMVGLINETENGVINRKTVGNEVKRVLGHSSERLKVCMAEVWFCGRCFCEKPLMRSFDQFGRVF 897
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BLAST of mRNA_L-elsbetiae_contig13611.2751.1 vs. uniprot
Match: D7G349_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G349_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.720e-31
Identity = 66/100 (66.00%), Postives = 76/100 (76.00%), Query Frame = 3 
Query:  306 SCLQFKGVCLTVHQQSFAKHNTFFLHKLNVIKFDRFAFMVVLINEIEN*AINRKTVASLVKRVLGHDSNRLKVCMTEVWFCGRCFCAMRLMRHFDQFGRV 605
            SC Q  GV L  H+Q+ AK   F LH LNV+KFDRFAFMV LINE EN AINRK+VA++VKRV GH S R+++C  +VWFCGRCFC   LMR FDQFGRV
Sbjct:  370 SCAQLSGVNLNAHEQNHAKKKKF-LHMLNVMKFDRFAFMVTLINETENEAINRKSVANMVKRVRGHGSERVEICQAQVWFCGRCFCQKSLMRSFDQFGRV 468
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BLAST of mRNA_L-elsbetiae_contig13611.2751.1 vs. uniprot
Match: A0A6H5K8T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T0_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.100e-30
Identity = 60/73 (82.19%), Postives = 63/73 (86.30%), Query Frame = 3 
Query:  387 LNVIKFDRFAFMVVLINEIEN*AINRKTVASLVKRVLGHDSNRLKVCMTEVWFCGRCFCAMRLMRHFDQFGRV 605
            LNV+KFDRFAFMVVLINE EN AINRKTVA LV+RVLGH S+RLKVCM EVWFCGRCFC   LMR FDQ GRV
Sbjct:    2 LNVMKFDRFAFMVVLINETENEAINRKTVAGLVQRVLGHSSDRLKVCMLEVWFCGRCFCKNPLMRSFDQVGRV 74
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BLAST of mRNA_L-elsbetiae_contig13611.2751.1 vs. uniprot
Match: A0A6H5JTF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF9_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 5.270e-30
Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 3 
Query:  306 SCLQFKGVCLTVHQQSFAKHNTFFLHKLNVIKFDRFAFMVVLINEIEN*AINRKTVASLVKRVLGHDSNRLKVCMTEVWFCGRCFCAMRLMRHFDQFGRV 605
            +C Q  GV L  H+Q+ AK   F LH LNV+KFDRF FMV LINE EN A+ R++VA++VKRV GH   ++++C  EVWFCGRCFC   LMR FDQFGRV
Sbjct:  121 TCAQLSGVNLNAHEQNHAKKKKF-LHMLNVMKFDRFTFMVTLINETENEAMKRRSVANMVKRVRGHGLEKVQICQAEVWFCGRCFCENSLMRSFDQFGRV 219
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BLAST of mRNA_L-elsbetiae_contig13611.2751.1 vs. uniprot
Match: A0A6H5JVZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ9_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.550e-29
Identity = 63/100 (63.00%), Postives = 75/100 (75.00%), Query Frame = 3 
Query:  306 SCLQFKGVCLTVHQQSFAKHNTFFLHKLNVIKFDRFAFMVVLINEIEN*AINRKTVASLVKRVLGHDSNRLKVCMTEVWFCGRCFCAMRLMRHFDQFGRV 605
            +C Q  GV L  H+Q+ AK   F LH LNV+KFDRFAFMV LINE EN AINR++VA++VKRV GH   ++++C  EVWFCGRCFC   LMR FDQFGRV
Sbjct:  461 TCAQLSGVNLNAHEQNHAKKKKF-LHMLNVMKFDRFAFMVTLINETENEAINRRSVANMVKRVRGHGLEKVQICQAEVWFCGRCFCENSLMRSFDQFGRV 559
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BLAST of mRNA_L-elsbetiae_contig13611.2751.1 vs. uniprot
Match: A0A6H5K1E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 6.970e-29
Identity = 63/100 (63.00%), Postives = 75/100 (75.00%), Query Frame = 3 
Query:  306 SCLQFKGVCLTVHQQSFAKHNTFFLHKLNVIKFDRFAFMVVLINEIEN*AINRKTVASLVKRVLGHDSNRLKVCMTEVWFCGRCFCAMRLMRHFDQFGRV 605
            +C Q  GV L  H+Q+ AK   F LH LNV+KFDRFAFMV LINE EN AINR++VA++VKRV GH   ++++C  EVWFCGRCFC   LMR FDQFGRV
Sbjct:  750 TCAQLSGVNLNAHEQNHAKKKKF-LHMLNVMKFDRFAFMVTLINETENEAINRRSVANMVKRVRGHGLEKVQICQAEVWFCGRCFCENSLMRSFDQFGRV 848
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BLAST of mRNA_L-elsbetiae_contig13611.2751.1 vs. uniprot
Match: A0A6H5JU18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU18_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 5.330e-28
Identity = 86/205 (41.95%), Postives = 115/205 (56.10%), Query Frame = 3 
Query:   15 QSWLCGP---GHALELRTRALKHFKSSWALWISKKPAAVDGLVQEFDRPV-VQHYAAP*GA--RRDEA*KASLGE*CR--TILCARHPARL*PWY*MLSEIRPDRSCLQFKGVCLTVHQQSFAKHNTFFLHKLNVIKFDRFAFMVVLINEIEN*AINRKTVASLVKRVLGHDSNRLKVCMTEVWFCGRCFCAMRLMRHFDQFGRV 605
            Q+WLC     G A++ RT+AL+      A    +K A ++G+V+E+  P  +Q       A  RR  A +++ G      T+    H       Y  +       SC Q  GV L  ++Q+ AK   F L  LNV+KFDRFAFMV LINE +N AINR++VA+ VKRV GH S R+++C  EVWF GRCFC   L+R FDQF RV
Sbjct:   38 QNWLCAQERFGWAVQ-RTKALQ---IQVAQRQPRKNADINGIVEEYGLPFDIQPLQEDPTAIVRRTHALRSNAGPYYGPDTLHDCNHGDDSRQKYGGID------SCAQLSGVNLNAYEQNHAKKKKF-LRTLNVMKFDRFAFMVTLINETKNEAINRESVANTVKRVRGHGSERVEICQAEVWFWGRCFCQESLVRSFDQFSRV 231
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BLAST of mRNA_L-elsbetiae_contig13611.2751.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.010e-20
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 3 
Query:  306 SCLQFKGVCLTVHQQSFAKHNTFFLHKLNVIKFDRFAFMVVLINEIEN*AINRKTVASLVKRVLGHDSNRLKVCMTEVWFCGRCFCAMRLMRHF 587
            SC Q  GV L  H+Q+ AK   F +H LN +KFDRFAFMV LINE EN AI+RK+VA++VK V GH S ++K+   +VWF GRCFC   LMR F
Sbjct:  487 SCAQLSGVNLNAHKQNHAKKKKF-VHMLNDMKFDRFAFMVTLINETENEAIHRKSVANMVKLVRGHGSEQVKIFQAQVWFYGRCFCQKSLMRSF 579
[Close]
BLAST of mRNA_L-elsbetiae_contig13611.2751.1 vs. uniprot
Match: A0A6H5JUC2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.360e-13
Identity = 44/99 (44.44%), Postives = 55/99 (55.56%), Query Frame = 3 
Query:  309 CLQFKGVCLTVHQQSFAKHNTFFLHKLNVIKFDRFAFMVVLINEIEN*AINRKTVASLVKRVLGHDSNRLKVCMTEVWFCGRCFCAMRLMRHFDQFGRV 605
            C Q  GV    H+Q+ +K  T  L  ++ + FD F F ++LINE+EN  INRKT    V         RL  C  EVW CGRCFC+  LMR FDQF  +
Sbjct:    9 CPQPTGVNCNAHEQNHSK-KTKRLPSVSGMGFDTFTFNIILINELENVKINRKTWIVAVSSATELLYERLHACRKEVWTCGRCFCSKPLMRSFDQFDLI 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13611.2751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JLY7_9PHAE8.070e-3873.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKU6_9PHAE2.190e-3473.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G349_ECTSI1.720e-3166.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8T0_9PHAE2.100e-3082.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTF9_9PHAE5.270e-3060.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVZ9_9PHAE2.550e-2963.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1E3_9PHAE6.970e-2963.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU18_9PHAE5.330e-2841.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWV2_9PHAE1.010e-2057.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUC2_9PHAE3.360e-1344.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13611contigL-elsbetiae_contig13611:2768..4295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1487
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13611.2751.1prot_L-elsbetiae_contig13611.2751.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13611 2807..3198 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.19529-UTR-L-elsbetiae_contig13611:2767..28061622815528.19529-UTR-L-elsbetiae_contig13611:2767..2806Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13611 2768..2806 +
1691682941.9217842-UTR-L-elsbetiae_contig13611:2767..28061691682941.9217842-UTR-L-elsbetiae_contig13611:2767..2806Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13611 2768..2806 +
1622815528.240323-UTR-L-elsbetiae_contig13611:3198..42951622815528.240323-UTR-L-elsbetiae_contig13611:3198..4295Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13611 3199..4295 +
1691682941.948102-UTR-L-elsbetiae_contig13611:3198..42951691682941.948102-UTR-L-elsbetiae_contig13611:3198..4295Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13611 3199..4295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.2107153-CDS-L-elsbetiae_contig13611:2806..30351622815528.2107153-CDS-L-elsbetiae_contig13611:2806..3035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13611 2807..3035 +
1691682941.9317558-CDS-L-elsbetiae_contig13611:2806..30351691682941.9317558-CDS-L-elsbetiae_contig13611:2806..3035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13611 2807..3035 +
1622815528.2238894-CDS-L-elsbetiae_contig13611:3076..31981622815528.2238894-CDS-L-elsbetiae_contig13611:3076..3198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13611 3077..3198 +
1691682941.939926-CDS-L-elsbetiae_contig13611:3076..31981691682941.939926-CDS-L-elsbetiae_contig13611:3076..3198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13611 3077..3198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13611.2751.1

>prot_L-elsbetiae_contig13611.2751.1 ID=prot_L-elsbetiae_contig13611.2751.1|Name=mRNA_L-elsbetiae_contig13611.2751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MLWNCERAPSSTSNPVGLYGSRKSRPLSTGSCKSLTGLSFSITPPPEEPD
ATKRRKHPLGSDAGPYYAPDTLHDCNHGIECCRKFARIDPVSNSRGYVSP
CTSKVSRSITLFFCTS*
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mRNA from alignment at L-elsbetiae_contig13611:2768..4295+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13611.2751.1 ID=mRNA_L-elsbetiae_contig13611.2751.1|Name=mRNA_L-elsbetiae_contig13611.2751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1528bp|location=Sequence derived from alignment at L-elsbetiae_contig13611:2768..4295+ (Laminarionema elsbetiae ELsaHSoW15)
TTTGCTTCCTTTAGCAGTCCTGGCTGTGCGGTCCGGGGCATGCTTTGGAA
CTGCGAACGCGCGCCCTCAAGCACTTCAAATCCAGTTGGGCTTTATGGAT
CTCGAAAAAGCCGGCCGCTGTCGACGGGCTCGTGCAAGAGTTTGACCGGC
CTGTCGTTCAGCATTACGCCGCCCCCTGAGGAGCCCGACGCGACGAAGCG
TAGAAAGCATCCCTTGGGGAGTGATGCCGGACCATACTATGCGCCAGACA
CCCTGCACGACTGTAACCATGGTATTGGATGTGTGTGTGTGTGTGTGTCC
TTCCCATTTATGGTATTGAATGCTGTCGGAAATTCGCCCGGATAGATCCT
GTCTCCAATTCAAGGGGGTATGTCTCACCGTGCACCAGCAAAGTTTCGCG
AAGCATAACACTTTTTTTCTGCACAAGCTAAATGTCATTAAGTTCGACCG
TTTCGCGTTCATGGTTGTTCTCATCAACGAGATCGAGAACTAGGCGATCA
ATCGCAAAACCGTGGCGAGTTTGGTCAAGCGCGTTCTGGGTCACGACAGT
AACCGGCTGAAAGTTTGCATGACAGAAGTCTGGTTTTGCGGCCGGTGCTT
CTGCGCGATGCGTCTGATGCGGCATTTTGATCAATTCGGCCGCGTGTTTT
TTGTCCCGTTTATCGCCATGACCATACATTTGCTGGAAATATTTATATGC
CGTTGGGGTTTTGGTGGACGCTTCAGCTTTGCCTTTTAGAGGGGGAGGTA
CTTCATGCTCTCGCTGTGTTTTGTTCAAGCCTGCTATGGGCAGGTTGATT
TTGTTGTTTGGCGAGGGCCGCAGCATAGTTGATGAATGTATGATTGGGGG
CCCGTGATTTCTAGGCGATGGTTGTTTCGTGGGTTCGTCGAGTTGGTAGT
ACAGGTATATAGATGCTTTCTCATAGGCGAAGCCGGCAAGCAGCTGTGGT
TTTTATTTCGCGGACAAAACCCTTTGTTACATGTGCGAATATGCACCTTT
GGCATCAATGAACTTCCTCAAGTGTAGACTAGACTTTGTTCGTCAGGCGA
GGGTTCCGTTTCGGGAGCGTCTTCTCCTTGGAGCTTTTAGTATCCCGGTA
CGGGTAACCTTCTTCCACCTTTCGGTGGAGAAATAGCGGAACTTTAGCAT
GGGAATCACAGTCGACTGCTGTTGTTGTGGTTCCTGCGGCGGTCAGTCAA
CGTTTGATATTGATTTTTTGATATCTGGTCCCTGATCAAACTAGGGTTTA
GCGTACCACTAGACTGCAGACCGTACATCAGTAGTAGTGCCGATCTAACG
TATGTACGCGTGAAACCCCCGTCACGCTCGCTATGAAGAGCTCTGCACAA
GAAAACAGCAGACAAGGGCATGCTGCCGTGGAACCCCCCGCGCCTCCCCT
CCTAATTCGAACCGTCGTTAGTCGCGCGTGCGTTGTGCCCTTTGTGCCCT
GCTACTGCTGTACACAGGCACCTCTACATAAAAGCACCGCTCGAAATTTC
AAATAGTGCACATGGAAGGCACCGCCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13611:2768..4295+

>mRNA_L-elsbetiae_contig13611.2751.1 ID=mRNA_L-elsbetiae_contig13611.2751.1|Name=mRNA_L-elsbetiae_contig13611.2751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig13611:2768..4295+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTGGAACTGCGAACGCGCGCCCTCAAGCACTTCAAATCCAGTTGG
GCTTTATGGATCTCGAAAAAGCCGGCCGCTGTCGACGGGCTCGTGCAAGA
GTTTGACCGGCCTGTCGTTCAGCATTACGCCGCCCCCTGAGGAGCCCGAC
GCGACGAAGCGTAGAAAGCATCCCTTGGGGAGTGATGCCGGACCATACTA
TGCGCCAGACACCCTGCACGACTGTAACCATGCTTTGGAACTGCGAACGC
GCGCCCTCAAGCACTTCAAATCCAGTTGGGCTTTATGGATCTCGAAAAAG
CCGGCCGCTGTCGACGGGCTCGTGCAAGAGTTTGACCGGCCTGTCGTTCA
GCATTACGCCGCCCCCTGAGGAGCCCGACGCGACGAAGCGTAGAAAGCAT
CCCTTGGGGAGTGATGCCGGACCATACTATGCGCCAGACACCCTGCACGA
CTGTAACCATGGTATTGAATGCTGTCGGAAATTCGCCCGGATAGATCCTG
TCTCCAATTCAAGGGGGTATGTCTCACCGTGCACCAGCAAAGTTTCGCGA
AGCATAACACTTTTTTTCTGCACAAGCTAAATGGTATTGAATGCTGTCGG
AAATTCGCCCGGATAGATCCTGTCTCCAATTCAAGGGGGTATGTCTCACC
GTGCACCAGCAAAGTTTCGCGAAGCATAACACTTTTTTTCTGCACAAGCT
AA
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