mRNA_L-elsbetiae_contig13607.2749.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13607.2749.1
Unique NamemRNA_L-elsbetiae_contig13607.2749.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13607.2749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13607contigL-elsbetiae_contig13607:72..888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size817
Cds size477
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.0215015-UTR-L-elsbetiae_contig13607:71..4111622815528.0215015-UTR-L-elsbetiae_contig13607:71..411Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13607 72..411 +
1691682941.8072505-UTR-L-elsbetiae_contig13607:71..4111691682941.8072505-UTR-L-elsbetiae_contig13607:71..411Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13607 72..411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.0359757-CDS-L-elsbetiae_contig13607:411..8881622815528.0359757-CDS-L-elsbetiae_contig13607:411..888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13607 412..888 +
1691682941.815901-CDS-L-elsbetiae_contig13607:411..8881691682941.815901-CDS-L-elsbetiae_contig13607:411..888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13607 412..888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13607.2749.1prot_L-elsbetiae_contig13607.2749.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13607 412..888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13607.2749.1

>prot_L-elsbetiae_contig13607.2749.1 ID=prot_L-elsbetiae_contig13607.2749.1|Name=mRNA_L-elsbetiae_contig13607.2749.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MQQHLLLLRQNEACTDEIGHTLVLFRAERRSARTRQGTFMAQLLLLSPLN
LRRVVVLPTSAYPLGPQERVPRPGLTWLQSPSHARHAIGFGWTRRIDAVS
LSPGGLNRVHRPRRHGLVMPSEALLLLLLLLCSDACALHRAGAKEHRRYT
WRFSIAKDA
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mRNA from alignment at L-elsbetiae_contig13607:72..888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13607.2749.1 ID=mRNA_L-elsbetiae_contig13607.2749.1|Name=mRNA_L-elsbetiae_contig13607.2749.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=817bp|location=Sequence derived from alignment at L-elsbetiae_contig13607:72..888+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCTGACGAAGCTATCGATTTTGCTGTCATCCTCCCTTCGTCCTCGTGG
TCTTCTTGCGAGTGCGCACTGAGCAGCGAGTCGGGTCAGGTACACCGCCG
GCGCCGGTTCGGTCCTCCCAGCCATCCCTGGCGAAACCGTCACCAGGGTC
CCCGTCTGGTGTTAGTTGCTGCTGCTCCAAAGCAACCGCCGAGGGCAATG
GTTGGGGGGTTGGTTGGCCGTACGAGCGTGGCTTGTGTCTCTTGGAATTG
ATTGTCGATGTTGCTGGTGTTGGTGGTGTTGAGGCTGCTACCGCCGCTCT
GCTGGTGCTGGTGCTGGTGGTGCTGGTATTGATACTGCTGATGCAGCAGC
ATCTGCTGCTGCTGCGGCAGAACGAAGCTTGCACCGACGAGATTGGGCAT
ACTCTGGTTCTCTTCCGGGCCGAGCGACGGAGTGCGAGAACCCGGCAGGG
AACGTTTATGGCGCAGCTCTTGTTGCTGAGCCCCTTGAACCTGAGGCGTG
TCGTCGTGCTGCCAACATCGGCTTACCCGCTCGGACCACAAGAGCGTGTG
CCGCGGCCAGGCTTGACTTGGCTGCAGTCCCCATCCCACGCCCGCCACGC
CATCGGATTCGGATGGACACGACGGATTGACGCCGTTTCCCTTAGTCCCG
GTGGCCTGAATCGGGTGCACCGGCCCCGTCGCCATGGTTTGGTGATGCCT
AGTGAAGCGCTGCTGCTGCTGCTGCTGCTGCTGTGCAGTGATGCCTGCGC
CTTGCACCGCGCCGGCGCCAAGGAACACCGACGGTACACCTGGCGCTTCT
CGATCGCCAAAGATGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13607:72..888+

>mRNA_L-elsbetiae_contig13607.2749.1 ID=mRNA_L-elsbetiae_contig13607.2749.1|Name=mRNA_L-elsbetiae_contig13607.2749.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig13607:72..888+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCAGCATCTGCTGCTGCTGCGGCAGAACGAAGCTTGCACCGACGA
GATTGGGCATACTCTGGTTCTCTTCCGGGCCGAGCGACGGAGTGCGAGAA
CCCGGCAGGGAACGTTTATGGCGCAGCTCTTGTTGCTGAGCCCCTTGAAC
CTGAGGCGTGTCGTCGTGCTGCCAACATCGGCTTACCCGCTCGGACCACA
AGAGCGTGTGCCGCGGCCAGGCTTGACTTGGCTGCAGTCCCCATCCCACG
CCCGCCACGCCATCGGATTCGGATGGACACGACGGATTGACGCCGTTTCC
CTTAGTCCCGGTGGCCTGAATCGGGTGCACCGGCCCCGTCGCCATGGTTT
GGTGATGCCTAGTGAAGCGCTGCTGCTGCTGCTGCTGCTGCTGTGCAGTG
ATGCCTGCGCCTTGCACCGCGCCGGCGCCAAGGAACACCGACGGTACACC
TGGCGCTTCTCGATCGCCAAAGATGCAATGCAGCAGCATCTGCTGCTGCT
GCGGCAGAACGAAGCTTGCACCGACGAGATTGGGCATACTCTGGTTCTCT
TCCGGGCCGAGCGACGGAGTGCGAGAACCCGGCAGGGAACGTTTATGGCG
CAGCTCTTGTTGCTGAGCCCCTTGAACCTGAGGCGTGTCGTCGTGCTGCC
AACATCGGCTTACCCGCTCGGACCACAAGAGCGTGTGCCGCGGCCAGGCT
TGACTTGGCTGCAGTCCCCATCCCACGCCCGCCACGCCATCGGATTCGGA
TGGACACGACGGATTGACGCCGTTTCCCTTAGTCCCGGTGGCCTGAATCG
GGTGCACCGGCCCCGTCGCCATGGTTTGGTGATGCCTAGTGAAGCGCTGC
TGCTGCTGCTGCTGCTGCTGTGCAGTGATGCCTGCGCCTTGCACCGCGCC
GGCGCCAAGGAACACCGACGGTACACCTGGCGCTTCTCGATCGCCAAAGA
TGCA
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