mRNA_L-elsbetiae_contig13601.2748.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13601.2748.1
Unique NamemRNA_L-elsbetiae_contig13601.2748.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13601.2748.1 vs. uniprot
Match: D7G2Y1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y1_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 3.460e-50
Identity = 104/168 (61.90%), Postives = 130/168 (77.38%), Query Frame = 1 
Query:    1 AARLRETREGERVRTANLVNVLRSEVEGLRRRRPRTGQAGVQTVLRGGDLRATEALLLELRRKSEYLEVGLEMFREESGRRQELAGLKAEEDALKAADHLHASHVREGSSRAYCRRLEGRVAALMALRDKLRREKQVLRAAVRESFRDTLAKEQERTQSRRTVATQVK 504
            AA+ RETRE ERVRTA  ++ LRSE E LRRR PRT    VQT L+G D+  TEAL+L L RK++  E G E F++++ R+ EL  LKAEE+ALKA DHLHASHVREG++RAYC+RLEGRVAALMA R++LR+E+QVLRAAVR SF+D   KE+ R +  R V+TQV+
Sbjct:  202 AAQARETREAERVRTARAIDSLRSEAEELRRR-PRTRGVEVQTGLKGSDVGDTEALVLALERKNKGTEAGFETFKKDAERKLELENLKAEEEALKADDHLHASHVREGNARAYCQRLEGRVAALMAHREELRQERQVLRAAVRASFKDAADKEKLRVERMRNVSTQVE 368
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13601.2748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2Y1_ECTSI3.460e-5061.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13601contigL-elsbetiae_contig13601:528..3175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_004490.1
Exons5
Model size573
Cds size573
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13601.2748.1prot_L-elsbetiae_contig13601.2748.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13601 528..3175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.913866-CDS-L-elsbetiae_contig13601:527..7221622815527.913866-CDS-L-elsbetiae_contig13601:527..722Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13601 528..722 +
1691682941.7502694-CDS-L-elsbetiae_contig13601:527..7221691682941.7502694-CDS-L-elsbetiae_contig13601:527..722Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13601 528..722 +
1622815527.9339817-CDS-L-elsbetiae_contig13601:1331..14271622815527.9339817-CDS-L-elsbetiae_contig13601:1331..1427Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13601 1332..1427 +
1691682941.759702-CDS-L-elsbetiae_contig13601:1331..14271691682941.759702-CDS-L-elsbetiae_contig13601:1331..1427Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13601 1332..1427 +
1622815527.9496548-CDS-L-elsbetiae_contig13601:1852..19691622815527.9496548-CDS-L-elsbetiae_contig13601:1852..1969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13601 1853..1969 +
1691682941.768523-CDS-L-elsbetiae_contig13601:1852..19691691682941.768523-CDS-L-elsbetiae_contig13601:1852..1969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13601 1853..1969 +
1622815527.9665916-CDS-L-elsbetiae_contig13601:2633..27231622815527.9665916-CDS-L-elsbetiae_contig13601:2633..2723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13601 2634..2723 +
1691682941.782592-CDS-L-elsbetiae_contig13601:2633..27231691682941.782592-CDS-L-elsbetiae_contig13601:2633..2723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13601 2634..2723 +
1622815527.9814026-CDS-L-elsbetiae_contig13601:3100..31751622815527.9814026-CDS-L-elsbetiae_contig13601:3100..3175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13601 3101..3175 +
1691682941.7976723-CDS-L-elsbetiae_contig13601:3100..31751691682941.7976723-CDS-L-elsbetiae_contig13601:3100..3175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13601 3101..3175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13601.2748.1

>prot_L-elsbetiae_contig13601.2748.1 ID=prot_L-elsbetiae_contig13601.2748.1|Name=mRNA_L-elsbetiae_contig13601.2748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=191bp
AARLRETREGERVRTANLVNVLRSEVEGLRRRRPRTGQAGVQTVLRGGDL
RATEALLLELRRKSEYLEVGLEMFREESGRRQELAGLKAEEDALKAADHL
HASHVREGSSRAYCRRLEGRVAALMALRDKLRREKQVLRAAVRESFRDTL
AKEQERTQSRRTVATQVKCSVCALHGELGAGEDTAATGRGP
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mRNA from alignment at L-elsbetiae_contig13601:528..3175+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13601.2748.1 ID=mRNA_L-elsbetiae_contig13601.2748.1|Name=mRNA_L-elsbetiae_contig13601.2748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2648bp|location=Sequence derived from alignment at L-elsbetiae_contig13601:528..3175+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGCGCCTCAGAGAGACGAGAGAGGGTGAGCGCGTGCGAACGGCGAA
TCTGGTGAACGTGCTGAGGTCGGAGGTGGAGGGGCTGAGGAGGAGGAGGC
CGCGCACGGGACAGGCCGGCGTGCAGACGGTCTTGCGAGGGGGCGACCTT
CGGGCGACCGAGGCGTTGCTGCTGGAGTTGCGAAGAAAGTCCGAGGTGCG
TGTAGTAGTGGATGGGCATGAACGAGGAAGCCATTCTTATACGCGCGCTC
AGGTACATATTTCAGTATTGTTGACGGTCCCGTCGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGCTGTTGCTATCGTTGTTGTTGCTGTTGCTATCGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTGTTGCTGTTGC
TGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTGTTGCTGTTGGAGGTG
GTAGCAGTGGTGGTGTCGGTGACGGTGGCGAAAGAGGTGTTGGCGGTGTT
GTATTTGCCCTTCACTAGAGAAGAAGAGCATCAAAAAGGAGGCCTGTCTG
CCCAAGCTGTCCAGCACGAGACACGAGACACGAGGCAAAGCAAGAGCAAG
AGTGTTGAATGGCCCTCTCTCGAGTACTCTCGTGCGAATCGCGATCGTTC
GACGCTCACCGTTGTCGCTCTGCCGCTGCTGCTACAGTACCCACCTTTTC
CCGGACCTTCGTTGCCGCGCGTGTACTGAACATCTAACCGTAAATTTGCC
CTTTTGTATGGCTTGTATGATTTGTATGATTCCGGCTCCGGCGCTCGTGC
GCAGTATCTCGAGGTCGGGTTGGAGATGTTTCGAGAGGAGTCAGGCCGGC
GGCAGGAGCTGGCGGGCTTGAAGGCCGAGGAGGACGCGCTGAAAGCGGCG
GTACGTAGATTGGTTCGAATCACTCGCCTTTGTTGGACAGCTGTCGGGTT
TTCTCTCGTTCGCGAGAGTGTACCATTGTACAACAGTAGTAGTCTACTCA
CCAACGTCGTAAATTGTTGGTAATCTCGCAGTGTTTTCGTTTTCGCTCCG
CCTGCATTTTGTCCAAAATGCTTCATTCGCCTTCGCTTTTTTGTTACAAA
ACGCCTTGGGGGGTCTGTCTCTCATATCTCCTCTCATCTCTACAATAGGT
ACCTGCAAACCTGGAGTTGACTGCAGGGCCCCTTTGAACTACACCACGCC
TATGAATTCCTGCGCATTTTACATTGACCCCCCACCCCGCCACGGCCTGA
TCCCCGTCGCCCCCACCTCCCCTGCCCCGCTGATCACCGCTGCGATGCTT
CTATGGCGCCCTGTCACACCCTCAGGACCATTTGCACGCTTCCCATGTGC
GGGAGGGCAGCTCTCGCGCCTACTGCCGACGGCTCGAAGGACGCGTGGCG
GCGCTCATGGCGCTCCGGGACAAGCTGCGGCGGGAGAAGCAGGTACATAG
GCGTGTGGGTGTGTGGGGTGTGCGGGTGGGTGCTGTCGCACGTCGTCGGT
TTTTGAGGCGGACCCCGCTCGAGACATCGCACTTCGCCTCAAAAACCTGT
ATTGTATACATATTTATGTGCATACATCGCATAGCGTGTAGAGGGGAGCG
GGGGGCTCCACACTATTTGTCTTTGATTTTGATCGCTTTGCTGACCCTTC
GGGTCCACTTTTATTTTCGTGTACCTTTTTTTAGGTGTAAGTTATCCTGC
GACCACGGGAATTTTGACCGCAACAAGTGTTGGATTGTACGGACATAGGG
AGGTACTGGGTGGAGAGATCGGAACGGTTTTTAATGTGAAGAAACAGCAA
CAATACATCGCTCTGTGCGAGCATCGGTGGCTTTGACGTCGTCAAGTCTG
TGTGGATACCACTGCGGCGATGCAATGGTTGAGCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCGCCCCCCCCCCC
GCGGGGCCCCCCGCNNNNNNNNNNAAATCCTCCGCTTTGTGGGGGGGTGG
GTGTTTTTGCGGGCGTCAAGTTGGGGGGGACCCCCCGGGGGGGAGGCAAT
TGGGGGGCCCCCCCCCCCCCCCCCCCCGTCCACGCACCGCCTTGGGCTCT
GTCTAGGTCTTGCGCGCCGCCGTGCGGGAGTCCTTCCGAGACACCTTGGC
GAAGGAGCAAGAGAGAACGCAGTCGAGACGCACAGTCGCAACGCAGGTAA
AGAAAGCGAGCAAAGCACGCACTGGTGGCTCGGCGTGTGTGGGGCTGACG
CGGGCCTTGGGGGAGTCGGCTGCGGCCAGAGGCACCGGTGTGCGGGAGGG
CAGCGCTACCCCACCTACTACTACTTTTGTGTTTTGTCTGCGGGGGGCCG
AAACGATTGTTGCAACCCTGTGGTAGACTACTACATACGCGAACATGTTC
TTTTCTTTTTCACCATTATACCGTACCGTTTTCCGTTCCCGGGTCCAGTT
TCCATTTATCATTCATTGCCGTTGCCCTCACCATTCCCGTTGCCATTTCC
GTTACCATTGCCATCCAATCTTGCTGTTCCGCCTCTCGGTCTCAATGTTG
CCACTGTACGGGACGAACGGCAGGTGAAGTGCAGCGTTTGCGCCCTTCAT
GGAGAGCTCGGCGCAGGAGAGGACACTGCCGCCACGGGAAGAGGGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13601:528..3175+

>mRNA_L-elsbetiae_contig13601.2748.1 ID=mRNA_L-elsbetiae_contig13601.2748.1|Name=mRNA_L-elsbetiae_contig13601.2748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig13601:528..3175+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGCGCCTCAGAGAGACGAGAGAGGGTGAGCGCGTGCGAACGGCGAA
TCTGGTGAACGTGCTGAGGTCGGAGGTGGAGGGGCTGAGGAGGAGGAGGC
CGCGCACGGGACAGGCCGGCGTGCAGACGGTCTTGCGAGGGGGCGACCTT
CGGGCGACCGAGGCGTTGCTGCTGGAGTTGCGAAGAAAGTCCGAGGCGGC
GCGCCTCAGAGAGACGAGAGAGGGTGAGCGCGTGCGAACGGCGAATCTGG
TGAACGTGCTGAGGTCGGAGGTGGAGGGGCTGAGGAGGAGGAGGCCGCGC
ACGGGACAGGCCGGCGTGCAGACGGTCTTGCGAGGGGGCGACCTTCGGGC
GACCGAGGCGTTGCTGCTGGAGTTGCGAAGAAAGTCCGAGTATCTCGAGG
TCGGGTTGGAGATGTTTCGAGAGGAGTCAGGCCGGCGGCAGGAGCTGGCG
GGCTTGAAGGCCGAGGAGGACGCGCTGAAAGCGGCGTATCTCGAGGTCGG
GTTGGAGATGTTTCGAGAGGAGTCAGGCCGGCGGCAGGAGCTGGCGGGCT
TGAAGGCCGAGGAGGACGCGCTGAAAGCGGCGGACCATTTGCACGCTTCC
CATGTGCGGGAGGGCAGCTCTCGCGCCTACTGCCGACGGCTCGAAGGACG
CGTGGCGGCGCTCATGGCGCTCCGGGACAAGCTGCGGCGGGAGAAGCAGG
ACCATTTGCACGCTTCCCATGTGCGGGAGGGCAGCTCTCGCGCCTACTGC
CGACGGCTCGAAGGACGCGTGGCGGCGCTCATGGCGCTCCGGGACAAGCT
GCGGCGGGAGAAGCAGGTCTTGCGCGCCGCCGTGCGGGAGTCCTTCCGAG
ACACCTTGGCGAAGGAGCAAGAGAGAACGCAGTCGAGACGCACAGTCGCA
ACGCAGGTCTTGCGCGCCGCCGTGCGGGAGTCCTTCCGAGACACCTTGGC
GAAGGAGCAAGAGAGAACGCAGTCGAGACGCACAGTCGCAACGCAGGTGA
AGTGCAGCGTTTGCGCCCTTCATGGAGAGCTCGGCGCAGGAGAGGACACT
GCCGCCACGGGAAGAGGGCCCGTGAAGTGCAGCGTTTGCGCCCTTCATGG
AGAGCTCGGCGCAGGAGAGGACACTGCCGCCACGGGAAGAGGGCCC
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