mRNA_L-elsbetiae_contig1360.2746.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1360.2746.1
Unique NamemRNA_L-elsbetiae_contig1360.2746.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1360.2746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1360contigL-elsbetiae_contig1360:19963..20817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size359
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.3544316-CDS-L-elsbetiae_contig1360:19962..200891622815527.3544316-CDS-L-elsbetiae_contig1360:19962..20089Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1360 19963..20089 +
1691682941.3756123-CDS-L-elsbetiae_contig1360:19962..200891691682941.3756123-CDS-L-elsbetiae_contig1360:19962..20089Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1360 19963..20089 +
1622815527.3660212-CDS-L-elsbetiae_contig1360:20587..208171622815527.3660212-CDS-L-elsbetiae_contig1360:20587..20817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1360 20588..20817 +
1691682941.3873882-CDS-L-elsbetiae_contig1360:20587..208171691682941.3873882-CDS-L-elsbetiae_contig1360:20587..20817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1360 20588..20817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1360.2746.1prot_L-elsbetiae_contig1360.2746.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1360 19963..20817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1360.2746.1

>prot_L-elsbetiae_contig1360.2746.1 ID=prot_L-elsbetiae_contig1360.2746.1|Name=mRNA_L-elsbetiae_contig1360.2746.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
TNKTPFRLFAPSCPPLPACRLPWLSSKHRRFHLRRVRLGAPSVAAAIWAA
ALSVASTPATSRRPSSPAMLLRLDKENEGVTRALDRGCRRPQTRTRRRRR
RRRQMGASSRLPPPAGAIG
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mRNA from alignment at L-elsbetiae_contig1360:19963..20817+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1360.2746.1 ID=mRNA_L-elsbetiae_contig1360.2746.1|Name=mRNA_L-elsbetiae_contig1360.2746.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=855bp|location=Sequence derived from alignment at L-elsbetiae_contig1360:19963..20817+ (Laminarionema elsbetiae ELsaHSoW15)
ACTAATAAAACACCTTTTCGCCTCTTCGCCCCGTCCTGTCCTCCACTTCC
CGCCTGTCGCTTGCCGTGGCTCTCATCGAAGCACCGCAGATTCCACCTGC
GAAGAGTTCGGCTGGGTGCTCCTTCAGGTAGGCCAATGCTCAGTATGTGC
CCTTTTTCTGCCTCTTGGTTGTCGTGGTGTCTCTCTCGGTGTTTGTTCGG
CGAAGCAGAGATGCGTTTTCCCGCGTTCTGGGGGCCCCACTTACACCATC
TGTGACACAGTAGTTCACGTGCGCACGTTGGCTACGTCAATGCGACGGCT
TGTGCAGTGTATTATGGTAGACGAAGAGGCGTGTTTCCAGAAGCATATAG
AAAAGGACAAGCCTTGCCTGCTGAGAAAAAGAGAGAATCGGCGTGTCATC
ACGATACATATCGTATGTACTTGCGGGCCTTTTCTAGCGGCGAGTTGGGC
AGTCCCACACCCAGACTAATTACCAACGACACGTGCGCCGTGAGACCGCT
CCCGGGAAGGTCCTCTTCGGGGTATCCCAATGCCTGATGCACCACGTACC
ACGCATCCCATCCGCCCGCCACTGCTGCTGCTGCTGGCACCCTCACACCA
CATTTTCTGTTCGTTTTTTTTTTAGTCGCCGCCGCGATATGGGCAGCGGC
GTTGTCAGTAGCTTCGACGCCGGCGACGTCTCGCCGGCCGTCTTCGCCGG
CCATGCTGCTGCGCCTAGACAAGGAAAACGAGGGGGTTACTCGAGCGTTG
GACCGGGGCTGCAGGAGACCGCAGACACGCACGAGGAGGAGGAGGAGGAG
GAGGAGGCAGATGGGGGCTTCGTCGCGGCTGCCACCGCCGGCAGGCGCAA
TAGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1360:19963..20817+

>mRNA_L-elsbetiae_contig1360.2746.1 ID=mRNA_L-elsbetiae_contig1360.2746.1|Name=mRNA_L-elsbetiae_contig1360.2746.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig1360:19963..20817+ (Laminarionema elsbetiae ELsaHSoW15)
ACTAATAAAACACCTTTTCGCCTCTTCGCCCCGTCCTGTCCTCCACTTCC
CGCCTGTCGCTTGCCGTGGCTCTCATCGAAGCACCGCAGATTCCACCTGC
GAAGAGTTCGGCTGGGTGCTCCTTCAGACTAATAAAACACCTTTTCGCCT
CTTCGCCCCGTCCTGTCCTCCACTTCCCGCCTGTCGCTTGCCGTGGCTCT
CATCGAAGCACCGCAGATTCCACCTGCGAAGAGTTCGGCTGGGTGCTCCT
TCAGTCGCCGCCGCGATATGGGCAGCGGCGTTGTCAGTAGCTTCGACGCC
GGCGACGTCTCGCCGGCCGTCTTCGCCGGCCATGCTGCTGCGCCTAGACA
AGGAAAACGAGGGGGTTACTCGAGCGTTGGACCGGGGCTGCAGGAGACCG
CAGACACGCACGAGGAGGAGGAGGAGGAGGAGGAGGCAGATGGGGGCTTC
GTCGCGGCTGCCACCGCCGGCAGGCGCAATAGGATCGCCGCCGCGATATG
GGCAGCGGCGTTGTCAGTAGCTTCGACGCCGGCGACGTCTCGCCGGCCGT
CTTCGCCGGCCATGCTGCTGCGCCTAGACAAGGAAAACGAGGGGGTTACT
CGAGCGTTGGACCGGGGCTGCAGGAGACCGCAGACACGCACGAGGAGGAG
GAGGAGGAGGAGGAGGCAGATGGGGGCTTCGTCGCGGCTGCCACCGCCGG
CAGGCGCAATAGGA
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