mRNA_L-elsbetiae_contig136.2741.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig136.2741.1
Unique NamemRNA_L-elsbetiae_contig136.2741.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig136.2741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig136contigL-elsbetiae_contig136:47970..48455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.3224232-CDS-L-elsbetiae_contig136:47969..482691622815526.3224232-CDS-L-elsbetiae_contig136:47969..48269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 47970..48269 +
1691682940.7297895-CDS-L-elsbetiae_contig136:47969..482691691682940.7297895-CDS-L-elsbetiae_contig136:47969..48269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 47970..48269 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.3370674-UTR-L-elsbetiae_contig136:48269..484551622815526.3370674-UTR-L-elsbetiae_contig136:48269..48455Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig136 48270..48455 +
1691682940.7386346-UTR-L-elsbetiae_contig136:48269..484551691682940.7386346-UTR-L-elsbetiae_contig136:48269..48455Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig136 48270..48455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig136.2741.1prot_L-elsbetiae_contig136.2741.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig136 47970..48269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig136.2741.1

>prot_L-elsbetiae_contig136.2741.1 ID=prot_L-elsbetiae_contig136.2741.1|Name=mRNA_L-elsbetiae_contig136.2741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
NEDSARAGRVVATGEDNNIEHASTTPVRRTRARVGRCPGGSLKRLPADTT
FSLVAAEQSLDIVGGEAVLSSSRVSLVPFFPFPPDPRPQRGTLPPSLRA*
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mRNA from alignment at L-elsbetiae_contig136:47970..48455+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig136.2741.1 ID=mRNA_L-elsbetiae_contig136.2741.1|Name=mRNA_L-elsbetiae_contig136.2741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig136:47970..48455+ (Laminarionema elsbetiae ELsaHSoW15)
AACGAAGATTCGGCGAGGGCTGGACGGGTGGTAGCAACCGGGGAAGATAA
CAACATCGAACATGCTAGCACGACCCCCGTTAGGAGGACTCGAGCACGTG
TTGGTCGTTGCCCCGGTGGCTCCTTGAAGAGACTCCCCGCCGACACCACC
TTCTCTCTCGTTGCTGCAGAACAATCTCTTGATATCGTCGGTGGCGAGGC
TGTCTTGTCTAGCAGCAGAGTGTCCTTGGTGCCTTTCTTCCCCTTTCCTC
CTGATCCTCGACCACAGCGCGGGACCCTACCGCCGTCGTTGCGGGCATAG
TCGTTGCGGGCAAAGACAGCGGCTGTAGCATGTTGGCTTCTCCCTTCCTG
AAACAAGCCCTTCCTGCAACCTGACTGAGCCCTGCTAGAGACAGCTTGCG
AGAGATTCAAGGACGGGGTGAAGGCTAGGCCTCGCACGGCCAGGCAGCCC
ACATCGATGGACGATGCCAAGGAAACCATCCTCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig136:47970..48455+

>mRNA_L-elsbetiae_contig136.2741.1 ID=mRNA_L-elsbetiae_contig136.2741.1|Name=mRNA_L-elsbetiae_contig136.2741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig136:47970..48455+ (Laminarionema elsbetiae ELsaHSoW15)
AACGAAGATTCGGCGAGGGCTGGACGGGTGGTAGCAACCGGGGAAGATAA
CAACATCGAACATGCTAGCACGACCCCCGTTAGGAGGACTCGAGCACGTG
TTGGTCGTTGCCCCGGTGGCTCCTTGAAGAGACTCCCCGCCGACACCACC
TTCTCTCTCGTTGCTGCAGAACAATCTCTTGATATCGTCGGTGGCGAGGC
TGTCTTGTCTAGCAGCAGAGTGTCCTTGGTGCCTTTCTTCCCCTTTCCTC
CTGATCCTCGACCACAGCGCGGGACCCTACCGCCGTCGTTGCGGGCATAG
AACGAAGATTCGGCGAGGGCTGGACGGGTGGTAGCAACCGGGGAAGATAA
CAACATCGAACATGCTAGCACGACCCCCGTTAGGAGGACTCGAGCACGTG
TTGGTCGTTGCCCCGGTGGCTCCTTGAAGAGACTCCCCGCCGACACCACC
TTCTCTCTCGTTGCTGCAGAACAATCTCTTGATATCGTCGGTGGCGAGGC
TGTCTTGTCTAGCAGCAGAGTGTCCTTGGTGCCTTTCTTCCCCTTTCCTC
CTGATCCTCGACCACAGCGCGGGACCCTACCGCCGTCGTTGCGGGCATAG
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