mRNA_L-elsbetiae_contig136.2740.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig136.2740.1 vs. uniprot
Match: D8LFG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG8_ECTSI) HSP 1 Score: 337 bits (864), Expect = 3.430e-101 Identity = 328/785 (41.78%), Postives = 407/785 (51.85%), Query Frame = 1 Query: 22 MVAPRPS-----QRPRPPPPEIPPGRITLVQWYAKNIGRYVPTFKDVTGSVKTAAENAEKIRFKSGSSPTTQDLRRMAGDVMKEKLGGVVATRRPSSSASEQEVGVIAD----------------TSSVLSPLETSTYRQEIDTLK---AEMLRLQPASPSTVGAVAVAPSETAVVDEPLRSSPSSFNTGEPSSTPAWLIKLGIPPVPTTKASAPGGKTESLLIAAQTQQG----NRPEAAVAETPRSKGKTREKKRRKDSVPAAVVD------LKAELRAESDKAAAKAVSSPQPTAKQQ--DSVASEAAATAAVQYVAPAPLYEPAE-GVPPLASPSKGLA----GDGSGARXXXXXXXXXXXXXXXTAGLGDATVAARASLEKLDLSGVSDQVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRDTAAPIANKLSTGL-LAGALGRGADKVLPAVGEAGRIVKDGASTLSKAAS---GSLPVVQEQTSALSSQIGSAVVDKSSQAVSQATDGAGKISGRISSELSGLAGGGDGLKAQAKATLGQL-SFSDGEGGVAGDV-GMGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGV-RDGVEGTSXXXXXXXXAATAGEGRLLQPTG---------------EXXXXXXXXXXXXXXXXXXXXXXLETGAAIEGERFGKEALSASSTLWDMIRGSGTGAGDAVREVSEEDLLERAALVGGELRETAEGLKVLKHEVSALRQSIRSSDLEGKARAIQERLASILE 2187 MV P P ++ RPPPP IP GRIT++QW KNIGR VP DV +V+TAAE +EKIR SG++PT QDLR MA + + KLGG+ A +S G +A T S SP TS R+EID LK AEML LQ PS A A E + V +++ S F P++ P+W K+ +P +PT + A+Q QG +PEAA + PRS+ K LKAELRAES+KAA + SP AKQQ A AA +YVAPAPLYEPAE GV SP+KG+A G G+G GL T AARASLEKLDL VS QV+ A+P+A+KLS G L+ A GRG D VL AVGEAGR V G S +S ++ LP ++ QTS LS+++ ++ S +A+S+AT AG+IS ++S L+ LAG G + A+ ++ +L S D +GG+ G V G A XXXXXXXXXXXXXX A +G+ + GE R LQP G + XXXXXX LETGA +GER+G+EA+SASSTLWDMIRGSGTGAGDAVREVSEEDLLERAA +G ELRETAEGL+VLKHEVS+LR+SIR SDLEG+ARA+ ERLAS LE Sbjct: 1 MVKPTPQAAATQRKARPPPPPIPEGRITILQWCEKNIGRRVPKLPDVETAVRTAAETSEKIRINSGAAPTAQDLRGMAKEAVTRKLGGLSAASSSGRKSSTAVPGAVAXXXXXXXXXXXAETPPGTPSSSSPSATSDVRREIDALKEAQAEMLSLQQTPPSATRAAA----EPSSVRPTSKTTSSPFRVEVPAAAPSWGFKVSLPAMPTFGTTGRDNVVALTGPASQKGQGPITDGQPEAA--DEPRSRAKKXXXXXXXXXXXXXXXXXXXXXXLKAELRAESEKAAL--LPSPPQRAKQQRQQPPAISGDVAAAPKYVAPAPLYEPAEEGVTSSTSPAKGVAEGVPGVGAGGEEKSG------------GGLEGVTAAARASLEKLDLRDVSQQVKPFTEKVGSASEAGVAAVLEQGRASLENLQAEADRISA----------QVASPVADKLSAGSRLSEAFGRGRDGVLKAVGEAGRAVDQGVSAVSSRSAVVVDGLPALKGQTSGLSARL----LETSGRALSRATGTAGEISKKMSGGLADLAGRGPDILARVRSISARLFSSDDQDGGLVGGVTAEGAAXXXXXXXXXXXXXXXTAIGRSGSGDGGGVAETGAEGIAASGNAGRRGDAVVEQGEERRLQPIGGGEGGNGVAPGEGWRDGEEAEEXXXXXXGEVLQPVGVKLETGATNDGERYGEEAMSASSTLWDMIRGSGTGAGDAVREVSEEDLLERAAELGKELRETAEGLEVLKHEVSSLRESIRESDLEGRARAVGERLASTLE 751
BLAST of mRNA_L-elsbetiae_contig136.2740.1 vs. uniprot
Match: A0A6H5KCP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP9_9PHAE) HSP 1 Score: 286 bits (733), Expect = 6.890e-81 Identity = 315/781 (40.33%), Postives = 382/781 (48.91%), Query Frame = 1 Query: 70 IPPGRITLVQWYAKNIGRYVPTFKDVTGSVKTAAENAEKIRFKSGSSPTTQDLRRMAGDVMKEKLGGVVAT-------------------------------RRPSSSASEQEVGVIADTSSVLSPLETSTYRQEIDTLK---AEMLRLQPASPSTVGAVAVAPSETAVVDEPLRSSPSSFNTGEPSSTPAWLIKLGIPPVPTTKASAPGGKTESLLIAAQTQQGNRPEAAVAETPRSKGKTREKKRRKD------SVPAAVVDLKAELRAESDKAAAKAVSSPQPTAKQQDS---------VASEAAATAAVQYVAPAPLYEPAEG-VPPLASPSKGLA----GDGSGARXXXXXXXXXXXXXXXTAGLGDATVAARASLEKLDLSGVSDQVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRDTAAPIANKLSTG-LLAGALGRGADKVLPAVGEAGRIVKDGASTLSKAAS---GSLPVVQEQTSALSSQIGSAVVDKSSQAVSQATDGAGKISGRISSELSGLAGGGDGLKAQAKATLGQLSFSDGE-GGVAGDVGMGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGVRDGVEGTSXXXXXXXXAATAGEGRLLQPTG----------------EXXXXXXXXXXXXXXXXXXXXXXLETGAAIEGERFGKEALSASSTLWDMIRGSGTGAGDAVREVSEEDLLERAALVGGELRETAEGLKVLKHEVSALRQSIRSSDLEGKARAIQERLASILE 2187 IP GRIT++QW KNIGR VP DV V+TAAE AEKIR SG++PT QDLR MA + + KLGG+ A ++ SA+E G T S SP TS RQEID LK AEML LQ PS A E + + +++ S F P++ P+W K+ +P PT +A Q +PEAA + PRSK K R K RR D S A VDLKAELRAES+KAA + SP V+ + A A +YVAPAPLYEPAE + SP+KGLA G G+G AGL TVAARASLEKLDL VS QV+ XX A P+A+KLS G L+ A GRG D VL AVGE GR V G S +S ++ LP ++ Q S LS++ +++ +A+S AG+I +IS L+ LAG + A+ + QL SD GGV+ + XXXXXXXXXXXX G +G+ + GE R LQP G XXXXXXXXXXX LETGA EGER+G++A+SASSTLWDMIRGSGTGAGDAVREVSEEDLLERAA +G +LRETAEGL+VLKHEVS LR+SIR SDLEG AS LE Sbjct: 201 IPEGRITILQWCQKNIGRRVPKLADVETGVRTAAETAEKIRINSGAAPTAQDLRGMAKEAVTRKLGGLSAASXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQQQARWSAAETPPG----TPSSSSPSATSDVRQEIDALKEAQAEMLSLQQTPPSATSTAA----EPSSLRPTSKATSSPFRVKAPAAAPSWGFKVSLPATPTFGTAA--------------GQDGQPEAA--DEPRSKAKKRTKSRRADAAVSGASASTAAVDLKAELRAESEKAAL--LPSPXXXXXXXXXXXXXXXXXVVSGDVAG--APKYVAPAPLYEPAEERITSTTSPAKGLAAGVPGIGAGGEEKSD------------AGLEGVTVAARASLEKLDLRDVSQQVEPFTEKVGSASEAGVAAVLEQARASXXNLQAEVDRISA----------QVAPPVADKLSAGGRLSEAFGRGRDVVLKAVGETGRAVDQGVSAVSSRSAVVVDGLPALKGQASGLSARCPQ-LLETWGRALSGT---AGEIYDKISGGLADLAGREPDILARVGSISAQLFSSDDRFGGVSAEAXXXXXXXXXXXXXXXXXXTIGRSRSSGDGGGVAETGA-EGIGASGNAGRRGGATVEQGEERRLQPIGGAGXXXXXXXXXXXXXXXXXXXXXXXXXEGEVLQPVGVKLETGATNEGERYGEDAMSASSTLWDMIRGSGTGAGDAVREVSEEDLLERAAQLGRKLRETAEGLEVLKHEVSLLRESIRESDLEGXXXXXXXXXASTLE 926 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig136.2740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig136.2740.1 >prot_L-elsbetiae_contig136.2740.1 ID=prot_L-elsbetiae_contig136.2740.1|Name=mRNA_L-elsbetiae_contig136.2740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=728bp MVAPRPSQRPRPPPPEIPPGRITLVQWYAKNIGRYVPTFKDVTGSVKTAAback to top mRNA from alignment at L-elsbetiae_contig136:42043..47869- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig136.2740.1 ID=mRNA_L-elsbetiae_contig136.2740.1|Name=mRNA_L-elsbetiae_contig136.2740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5827bp|location=Sequence derived from alignment at L-elsbetiae_contig136:42043..47869- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig136:42043..47869- >mRNA_L-elsbetiae_contig136.2740.1 ID=mRNA_L-elsbetiae_contig136.2740.1|Name=mRNA_L-elsbetiae_contig136.2740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4368bp|location=Sequence derived from alignment at L-elsbetiae_contig136:42043..47869- (Laminarionema elsbetiae ELsaHSoW15)back to top |