mRNA_L-elsbetiae_contig13592.2733.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13592.2733.1
Unique NamemRNA_L-elsbetiae_contig13592.2733.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13592.2733.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.700e-26
Identity = 62/136 (45.59%), Postives = 87/136 (63.97%), Query Frame = 1 
Query:  133 AASTPVHATGSDRLVYDRRRPLPHEATLELGEGQVMKVECFGKLDVVLLSKLRPPIRVTVKNMAVVPRLKSNYLSLSAIQMHDRIYIDETGIYTLDGKVHFAKLPAGNHVAGMRVERGREPPAVLAALVRPGVQRS 540
            +AST VHAT     VY+ R PL  E  L +G+G+ +K ECFG LDVV     R  + VT+K++AVVP L  + +SL+ IQ    + ++  G + L+G+VHF+KLP GN++   R+  G  PPA++AA VRPG  RS
Sbjct:   20 SAST-VHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVF--HCREDVLVTMKDIAVVPDLAFDLVSLNVIQETHDLLLNSAGTWILNGRVHFSKLPTGNYIQATRIAHGASPPAMVAATVRPGRPRS 152
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BLAST of mRNA_L-elsbetiae_contig13592.2733.1 vs. uniprot
Match: A0A6H5JFE5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE5_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 5.880e-21
Identity = 59/137 (43.07%), Postives = 80/137 (58.39%), Query Frame = 1 
Query:  148 VHATGSDRLVYDRRRPLPHEATLELGEGQVMKVECFGKLDVVLLSKLRPPIRVTVKNMAVVPRLKSNYLSLSAIQMHDRIYIDETGIYTLDGKVHFAKLPAGNHVAGMRV------ERGREPPAVLAALVRPGVQRS 540
            VH   S   VY+RR PLP E  L LG+G+ + VE FG LDV+        +RVT++N+ VVP L  + LSL+ IQ    I ++  G   L G+V   KLP GN++ G RV      E   +PPA++AA++RPG Q S
Sbjct:  450 VHVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCP--EDVRVTLQNVGVVPGLALDILSLNKIQDRHEIKLNRHGASMLGGRVRMTKLPHGNYIQGTRVDPLPQRESPFQPPAMVAAMLRPGTQSS 584
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BLAST of mRNA_L-elsbetiae_contig13592.2733.1 vs. uniprot
Match: A0A438I4Q7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438I4Q7_VITVI)

HSP 1 Score: 53.1 bits (126), Expect = 9.000e-5
Identity = 28/94 (29.79%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:  148 VHATGSDRLVYDRRRPLPHEATLELGEGQVMKVECFGKLDVVLLSKLRPPIRVTVKNMAVVPRLKSNYLSLSAIQMHDRIYIDETGIYTLDGKV 429
            +H T S + + +RR+P  HE  + +G+G  +KVE FG + + L+++      + + N+A +P L+ N +S+S++  H  ++       TL+GK+
Sbjct:  178 IHVTNSLQEMTNRRKPSKHEECVYMGDGSKVKVEFFGMIKLKLITESF----LLLHNVAFIPSLRRNLISVSSLDRHGYLF-------TLEGKM 260
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13592.2733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE3.700e-2645.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JFE5_9PHAE5.880e-2143.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A438I4Q7_VITVI9.000e-529.79Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13592contigL-elsbetiae_contig13592:906..1526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size623
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.1676672-CDS-L-elsbetiae_contig13592:905..15261622815526.1676672-CDS-L-elsbetiae_contig13592:905..1526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13592 906..1526 +
1691682940.643707-CDS-L-elsbetiae_contig13592:905..15261691682940.643707-CDS-L-elsbetiae_contig13592:905..1526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13592 906..1526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13592.2733.1prot_L-elsbetiae_contig13592.2733.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13592 906..1526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13592.2733.1

>prot_L-elsbetiae_contig13592.2733.1 ID=prot_L-elsbetiae_contig13592.2733.1|Name=mRNA_L-elsbetiae_contig13592.2733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
GAGKEIGRAGGHVMCLQSEASLTPADVLSKLLPPIQLLDMSVFVAASTPV
HATGSDRLVYDRRRPLPHEATLELGEGQVMKVECFGKLDVVLLSKLRPPI
RVTVKNMAVVPRLKSNYLSLSAIQMHDRIYIDETGIYTLDGKVHFAKLPA
GNHVAGMRVERGREPPAVLAALVRPGVQRSPKSASTMAPPPGFSALPVMG
GTAGHMA
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mRNA from alignment at L-elsbetiae_contig13592:906..1526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13592.2733.1 ID=mRNA_L-elsbetiae_contig13592.2733.1|Name=mRNA_L-elsbetiae_contig13592.2733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=621bp|location=Sequence derived from alignment at L-elsbetiae_contig13592:906..1526+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGGGGAAGGAGATTGGTCGTGCTGGAGGTCATGTCATGTGTTTACA
GTCTGAAGCGTCACTCACCCCCGCTGATGTTCTGTCCAAACTCCTCCCGC
CCATCCAGCTACTTGACATGTCAGTTTTTGTCGCTGCCAGTACTCCCGTG
CACGCCACTGGCTCTGACCGTCTTGTGTACGACCGGCGGCGCCCTTTACC
GCACGAAGCTACTCTAGAGCTCGGCGAAGGGCAGGTGATGAAGGTGGAGT
GCTTTGGCAAGCTCGATGTAGTGCTTCTTTCCAAGCTTCGCCCTCCCATC
CGTGTCACGGTGAAGAACATGGCCGTGGTACCACGGCTGAAGTCCAACTA
TCTGTCCCTCAGCGCCATCCAGATGCACGACCGCATCTACATCGACGAGA
CCGGCATATACACCCTTGACGGCAAGGTCCACTTCGCCAAGCTCCCCGCC
GGCAACCACGTAGCAGGGATGCGCGTGGAACGGGGCCGTGAACCTCCGGC
AGTGCTGGCGGCCTTGGTGCGGCCAGGAGTGCAGCGGAGCCCCAAGAGTG
CGTCTACGATGGCGCCGCCGCCTGGTTTTAGTGCTTTGCCCGTGATGGGG
GGGACGGCTGGGCACATGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13592:906..1526+

>mRNA_L-elsbetiae_contig13592.2733.1 ID=mRNA_L-elsbetiae_contig13592.2733.1|Name=mRNA_L-elsbetiae_contig13592.2733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig13592:906..1526+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGGGGAAGGAGATTGGTCGTGCTGGAGGTCATGTCATGTGTTTACA
GTCTGAAGCGTCACTCACCCCCGCTGATGTTCTGTCCAAACTCCTCCCGC
CCATCCAGCTACTTGACATGTCAGTTTTTGTCGCTGCCAGTACTCCCGTG
CACGCCACTGGCTCTGACCGTCTTGTGTACGACCGGCGGCGCCCTTTACC
GCACGAAGCTACTCTAGAGCTCGGCGAAGGGCAGGTGATGAAGGTGGAGT
GCTTTGGCAAGCTCGATGTAGTGCTTCTTTCCAAGCTTCGCCCTCCCATC
CGTGTCACGGTGAAGAACATGGCCGTGGTACCACGGCTGAAGTCCAACTA
TCTGTCCCTCAGCGCCATCCAGATGCACGACCGCATCTACATCGACGAGA
CCGGCATATACACCCTTGACGGCAAGGTCCACTTCGCCAAGCTCCCCGCC
GGCAACCACGTAGCAGGGATGCGCGTGGAACGGGGCCGTGAACCTCCGGC
AGTGCTGGCGGCCTTGGTGCGGCCAGGAGTGCAGCGGAGCCCCAAGAGTG
CGTCTACGATGGCGCCGCCGCCTGGTTTTAGTGCTTTGCCCGTGATGGGG
GGGACGGCTGGGCACATGGCGGGGGCGGGGAAGGAGATTGGTCGTGCTGG
AGGTCATGTCATGTGTTTACAGTCTGAAGCGTCACTCACCCCCGCTGATG
TTCTGTCCAAACTCCTCCCGCCCATCCAGCTACTTGACATGTCAGTTTTT
GTCGCTGCCAGTACTCCCGTGCACGCCACTGGCTCTGACCGTCTTGTGTA
CGACCGGCGGCGCCCTTTACCGCACGAAGCTACTCTAGAGCTCGGCGAAG
GGCAGGTGATGAAGGTGGAGTGCTTTGGCAAGCTCGATGTAGTGCTTCTT
TCCAAGCTTCGCCCTCCCATCCGTGTCACGGTGAAGAACATGGCCGTGGT
ACCACGGCTGAAGTCCAACTATCTGTCCCTCAGCGCCATCCAGATGCACG
ACCGCATCTACATCGACGAGACCGGCATATACACCCTTGACGGCAAGGTC
CACTTCGCCAAGCTCCCCGCCGGCAACCACGTAGCAGGGATGCGCGTGGA
ACGGGGCCGTGAACCTCCGGCAGTGCTGGCGGCCTTGGTGCGGCCAGGAG
TGCAGCGGAGCCCCAAGAGTGCGTCTACGATGGCGCCGCCGCCTGGTTTT
AGTGCTTTGCCCGTGATGGGGGGGACGGCTGGGCACATGGCG
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