mRNA_L-elsbetiae_contig13573.2721.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13573.2721.1
Unique NamemRNA_L-elsbetiae_contig13573.2721.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13573.2721.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 4.410e-83
Identity = 143/192 (74.48%), Postives = 160/192 (83.33%), Query Frame = 1
Query:    4 SAGPG-RRLVRAETPSVAGEGYRSGKWLWEWQIVSCGNRASVGVCGHDVAAISAAGVPVQGSGGD----RADLWLYRSDGSLSHGGESTERACPGGGFDSGDVIGVELDADAGTLTFLKNDSYVGARFEIVRRSDAAKGSDDGGGASSGGSRGLFPCVSLRVSGDAAVLLGLKKGSATITYRPPSSDKKGGG 564
            SAGPG RRLV AE PSVAGEGY++GKWLWEW ++SCGNR SVGVC  DVAAISAAGVP+QG+GG     RADLWLYRSDG+LSHGGESTER CPGGGFDSGDV+GVELDADAGTL FLKND+YVG +F+I RRS+     D  GG      RGL+PCVSLRV+GDAAVLLGLK+G+ATITYR P S+KK GG
Sbjct: 6538 SAGPGSRRLVVAEAPSVAGEGYQTGKWLWEWHVMSCGNRVSVGVCRRDVAAISAAGVPLQGAGGGGAGGRADLWLYRSDGNLSHGGESTERMCPGGGFDSGDVVGVELDADAGTLAFLKNDAYVGGQFKIDRRSEGDHSGDGEGG------RGLYPCVSLRVNGDAAVLLGLKQGAATITYRSPPSEKKSGG 6723          
BLAST of mRNA_L-elsbetiae_contig13573.2721.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 1.290e-74
Identity = 135/172 (78.49%), Postives = 145/172 (84.30%), Query Frame = 1
Query:    4 SAGPG-RRLVRAETPSVAGEGYRSGKWLWEWQIVSCGNRASVGVCGHDVAAISAAGVPVQGSGG----DRADLWLYRSDGSLSHGGESTERACPGGGFDSGDVIGVELDADAGTLTFLKNDSYVGARFEIVRRSDAAKGSDDGGGASSGGSRGLFPCVSLRVSGDAAVLLGL 504
            SA PG RRLV AE PSVAGEGY++GKWLWEW IVSCGNRASVGVC  DVAAISAAGVP+QG+GG    DRADLWLYRSDG+LSHGGESTER CPGGGFDSGDV+GVELDADAGTL FLKND+YVG +F+I RRS+   G D G G    G RGLFPCVSLR SGDAAVLLGL
Sbjct: 6021 SAEPGSRRLVVAEAPSVAGEGYQTGKWLWEWHIVSCGNRASVGVCRRDVAAISAAGVPLQGAGGGGAGDRADLWLYRSDGNLSHGGESTERMCPGGGFDSGDVVGVELDADAGTLAFLKNDAYVGGQFKIDRRSE---GDDSGDGE---GGRGLFPCVSLRASGDAAVLLGL 6186          
BLAST of mRNA_L-elsbetiae_contig13573.2721.1 vs. uniprot
Match: A0A812VSI3_9DINO (HERC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VSI3_9DINO)

HSP 1 Score: 70.1 bits (170), Expect = 2.590e-10
Identity = 52/163 (31.90%), Postives = 74/163 (45.40%), Query Frame = 1
Query:   70 SGKWLWEWQIVSCGNRASVGVCGHDVAAISAAGVPVQGSGGDRADLWLYRSDGSLSHGGESTERACPGGGFDSGDVIGVELDADAGTLTFLKNDSYVGARFEIVRRSDAAKGS----DDGGGASSGGSRGLFPCVSLRVSGDAAVLLGLKKGSATITYRPPSS 546
            SGKW+WE +++S        V GH V  ++  G  V+   G     W ++S+    H G S     P   F  GDVIGVE+D D GT+ +L N + +G  +  +R       S     DG        +G+ P ++    GDA  LLGLK G    T+    S
Sbjct:    7 SGKWMWEAKVLS--------VQGHVVVGMATRGAVVRNHLGCERQSWGFKSNRECFHKGSSKPYGKP---FSGGDVIGVEVDMDNGTIEWLVNGTGLGIAYTDLRAQAMEHSSVCHIPDG--------KGVVPGLTTYAQGDAVKLLGLKSGHGVRTWSEEDS 150          
BLAST of mRNA_L-elsbetiae_contig13573.2721.1 vs. uniprot
Match: A0A1W0A8K7_9STRA (HECT E3 ubiquitin ligase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8K7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.170e-6
Identity = 45/155 (29.03%), Postives = 66/155 (42.58%), Query Frame = 1
Query:   73 GKWLWEWQIVSCGNRASV--GVCGHDVAAISAAGVPVQGSGGDRADLWLYRSDGSLSHGGESTERACPGGGFDSGDVIGVELDADAGTLTFLKNDSYVGARFEIVRRSDAAKGSDDGGGASSGGSRGLFPCVSLRVSGDAAVLLGLKKGSATITY 531
            G++LWE++I +      +  G+  H+V      G    G        W + + G   H   S      G  F  GDV+G+EL+ DAGTL   +N+  +G  F  +           G G       GL PCVSL     +  + GLK G+ +I Y
Sbjct: 3646 GQYLWEFEITNLQTSDGIRLGIATHNVDTSILLGNDSYG--------WGFCATGKTYHNNSSNRFTSTG--FTQGDVVGMELNMDAGTLVIYRNNVLLGTAFSNLHLELPMDAFVTGNG-------GLIPCVSLYRPQSSVYIRGLKHGNGSIVY 3783          
BLAST of mRNA_L-elsbetiae_contig13573.2721.1 vs. uniprot
Match: A0A6J7WKN4_9CAUD (SPRY domain containing protein n=1 Tax=uncultured Caudovirales phage TaxID=2100421 RepID=A0A6J7WKN4_9CAUD)

HSP 1 Score: 55.5 bits (132), Expect = 2.190e-5
Identity = 49/186 (26.34%), Postives = 78/186 (41.94%), Query Frame = 1
Query:    1 VSAGPGRRLV--RAETPSVAGEGYRSGKWLWEWQIVSCGNRASVGVCGHDVAAISAAGVPVQGSGGDRADLWLYRSDGSLSHGGESTERACPGGGFDSGDVIGVELDADAGTLTFLKNDSYVGARFEIVRRSDAAKGSDDGGGASSGGSRGLFPCVSLRVSGDAAVLLGLKKGSATITYRPPSSDK 552
            VSA  G   V   A++  +   G  SGKW WE  + +  +   + +    +++ +         GGD      Y S+G+  + G +T     G    +GDV+G+  DADAGTLTF KN++  G  +  +                   S   FPC     +G+A  +  +  G  +  Y PP+  K
Sbjct:  282 VSASSGNLTVVNTADSKILGTIGMSSGKWYWEATVQTATDIVGIALGNSTLSSFT---------GGDANSWGYYFSNGNKYNSGSATAY---GASCATGDVVGIAFDADAGTLTFYKNNTSQGTAYSSLT------------------SGPYFPCAG---NGNANTVY-INFGQRSFAYTPPTGFK 433          
BLAST of mRNA_L-elsbetiae_contig13573.2721.1 vs. uniprot
Match: A0A2E7TNJ0_9ACTN (B30.2/SPRY domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2E7TNJ0_9ACTN)

HSP 1 Score: 55.1 bits (131), Expect = 3.060e-5
Identity = 35/103 (33.98%), Postives = 52/103 (50.49%), Query Frame = 1
Query:   61 GYRSGKWLWEWQIVSCGNRAS--VGVCGHDVAAISAAGVPVQGSGGDRADLWLYRSDGSLSHGGESTERACPGGGFDSGDVIGVELDADAGTLTFLKNDSYVG 363
            G  SGKW WE  +++ G  A+   G+C  +    S+   P+     D    + Y +DG  +  G +      G  + +GD++GV LD DAGTLTF KN +  G
Sbjct:  782 GLSSGKWYWEIYMITIGAAANCRTGICKTNTYGTSSGTGPI-----DMGVAYTYDADGQKTVPGST---GAYGATYAAGDIVGVALDMDAGTLTFYKNGATQG 876          
BLAST of mRNA_L-elsbetiae_contig13573.2721.1 vs. uniprot
Match: A0A3E0N2T2_9PROT (B30.2/SPRY domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3E0N2T2_9PROT)

HSP 1 Score: 55.1 bits (131), Expect = 3.130e-5
Identity = 46/119 (38.66%), Postives = 57/119 (47.90%), Query Frame = 1
Query:   16 GRRLVRAETPSVAGEGYRSGKWLWEWQIVSCGNRASVGVCGHDVAAISAAGVPVQGSGGDRADLWLYRSDGSLSHGGESTERACPGGGFDSGDVIGVELDADAGTLTFLKNDSYVGARF 372
            G  L  A T ++   G  SGK+ WE         A+ G    DV  I +AG  V G  G  AD + Y +DG+  +    T     G  + SGDVIGV LD DAGTL F KN +  G  F
Sbjct:  499 GSDLQAAVTGTI---GVSSGKYYWE---------ATAG-SNKDVIGIWSAGSHVTGYPGKTADSYGYFADGNKLNSETGTSY---GATYASGDVIGVALDLDAGTLVFYKNGASQGTAF 601          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13573.2721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KT07_9PHAE4.410e-8374.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCZ5_ECTSI1.290e-7478.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A812VSI3_9DINO2.590e-1031.90HERC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A1W0A8K7_9STRA3.170e-629.03HECT E3 ubiquitin ligase (Fragment) n=1 Tax=Thraus... [more]
A0A6J7WKN4_9CAUD2.190e-526.34SPRY domain containing protein n=1 Tax=uncultured ... [more]
A0A2E7TNJ0_9ACTN3.060e-533.98B30.2/SPRY domain-containing protein (Fragment) n=... [more]
A0A3E0N2T2_9PROT3.130e-538.66B30.2/SPRY domain-containing protein n=1 Tax=Prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13573contigL-elsbetiae_contig13573:1961..2621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.2
Seed ortholog evalue1.7e-66
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size663
Cds size660
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.1246898-CDS-L-elsbetiae_contig13573:1960..26201622815525.1246898-CDS-L-elsbetiae_contig13573:1960..2620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13573 1961..2620 +
1691682940.0724845-CDS-L-elsbetiae_contig13573:1960..26201691682940.0724845-CDS-L-elsbetiae_contig13573:1960..2620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13573 1961..2620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13573.2721.1prot_L-elsbetiae_contig13573.2721.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13573 1961..2620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13573.2721.1

>prot_L-elsbetiae_contig13573.2721.1 ID=prot_L-elsbetiae_contig13573.2721.1|Name=mRNA_L-elsbetiae_contig13573.2721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
VSAGPGRRLVRAETPSVAGEGYRSGKWLWEWQIVSCGNRASVGVCGHDVA
AISAAGVPVQGSGGDRADLWLYRSDGSLSHGGESTERACPGGGFDSGDVI
GVELDADAGTLTFLKNDSYVGARFEIVRRSDAAKGSDDGGGASSGGSRGL
FPCVSLRVSGDAAVLLGLKKGSATITYRPPSSDKKGGGSGRSPPSPPPPP
PLPAGETATLTLSAAAEAVA
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mRNA from alignment at L-elsbetiae_contig13573:1961..2621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13573.2721.1 ID=mRNA_L-elsbetiae_contig13573.2721.1|Name=mRNA_L-elsbetiae_contig13573.2721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=661bp|location=Sequence derived from alignment at L-elsbetiae_contig13573:1961..2621+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTCAGCCGGGCCCGGCCGGAGGCTGGTCCGCGCGGAGACACCCTCCGT CGCGGGGGAGGGCTACCGCTCCGGGAAGTGGCTGTGGGAGTGGCAGATCG TGTCCTGCGGCAACCGCGCCAGCGTCGGCGTGTGCGGCCACGACGTGGCC GCCATCAGCGCCGCCGGGGTGCCGGTGCAGGGGTCGGGAGGCGACCGCGC GGACCTGTGGCTGTACCGCTCCGACGGCAGCCTGTCGCACGGCGGGGAGT CGACGGAGCGGGCGTGCCCCGGGGGTGGTTTCGACAGCGGGGACGTGATC GGGGTGGAGCTCGACGCGGACGCCGGGACGCTGACGTTCTTGAAGAACGA CTCTTACGTTGGGGCGCGGTTTGAAATCGTTCGCCGATCGGATGCCGCGA AGGGGAGTGATGATGGTGGCGGCGCCAGCAGCGGGGGAAGCCGCGGTCTT TTCCCTTGCGTGTCGCTCCGCGTGAGCGGGGACGCGGCCGTCTTGCTGGG GCTGAAGAAAGGGTCGGCCACGATTACCTACCGCCCTCCGTCGTCTGACA AGAAGGGTGGAGGGAGCGGCCGTAGCCCCCCGTCGCCACCGCCCCCACCC CCGCTGCCGGCCGGGGAGACCGCAACGTTGACCTTGTCAGCGGCGGCGGA GGCTGTGGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13573:1961..2621+

>mRNA_L-elsbetiae_contig13573.2721.1 ID=mRNA_L-elsbetiae_contig13573.2721.1|Name=mRNA_L-elsbetiae_contig13573.2721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig13573:1961..2621+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTCAGCCGGGCCCGGCCGGAGGCTGGTCCGCGCGGAGACACCCTCCGT
CGCGGGGGAGGGCTACCGCTCCGGGAAGTGGCTGTGGGAGTGGCAGATCG
TGTCCTGCGGCAACCGCGCCAGCGTCGGCGTGTGCGGCCACGACGTGGCC
GCCATCAGCGCCGCCGGGGTGCCGGTGCAGGGGTCGGGAGGCGACCGCGC
GGACCTGTGGCTGTACCGCTCCGACGGCAGCCTGTCGCACGGCGGGGAGT
CGACGGAGCGGGCGTGCCCCGGGGGTGGTTTCGACAGCGGGGACGTGATC
GGGGTGGAGCTCGACGCGGACGCCGGGACGCTGACGTTCTTGAAGAACGA
CTCTTACGTTGGGGCGCGGTTTGAAATCGTTCGCCGATCGGATGCCGCGA
AGGGGAGTGATGATGGTGGCGGCGCCAGCAGCGGGGGAAGCCGCGGTCTT
TTCCCTTGCGTGTCGCTCCGCGTGAGCGGGGACGCGGCCGTCTTGCTGGG
GCTGAAGAAAGGGTCGGCCACGATTACCTACCGCCCTCCGTCGTCTGACA
AGAAGGGTGGAGGGAGCGGCCGTAGCCCCCCGTCGCCACCGCCCCCACCC
CCGCTGCCGGCCGGGGAGACCGCAACGTTGACCTTGTCAGCGGCGGCGGA
GGCTGTGGCAGTCTCAGCCGGGCCCGGCCGGAGGCTGGTCCGCGCGGAGA
CACCCTCCGTCGCGGGGGAGGGCTACCGCTCCGGGAAGTGGCTGTGGGAG
TGGCAGATCGTGTCCTGCGGCAACCGCGCCAGCGTCGGCGTGTGCGGCCA
CGACGTGGCCGCCATCAGCGCCGCCGGGGTGCCGGTGCAGGGGTCGGGAG
GCGACCGCGCGGACCTGTGGCTGTACCGCTCCGACGGCAGCCTGTCGCAC
GGCGGGGAGTCGACGGAGCGGGCGTGCCCCGGGGGTGGTTTCGACAGCGG
GGACGTGATCGGGGTGGAGCTCGACGCGGACGCCGGGACGCTGACGTTCT
TGAAGAACGACTCTTACGTTGGGGCGCGGTTTGAAATCGTTCGCCGATCG
GATGCCGCGAAGGGGAGTGATGATGGTGGCGGCGCCAGCAGCGGGGGAAG
CCGCGGTCTTTTCCCTTGCGTGTCGCTCCGCGTGAGCGGGGACGCGGCCG
TCTTGCTGGGGCTGAAGAAAGGGTCGGCCACGATTACCTACCGCCCTCCG
TCGTCTGACAAGAAGGGTGGAGGGAGCGGCCGTAGCCCCCCGTCGCCACC
GCCCCCACCCCCGCTGCCGGCCGGGGAGACCGCAACGTTGACCTTGTCAG
CGGCGGCGGAGGCTGTGGCA
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