mRNA_L-elsbetiae_contig1357.2717.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1357.2717.1
Unique NamemRNA_L-elsbetiae_contig1357.2717.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1357.2717.1 vs. uniprot
Match: D7FXJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ1_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 8.790e-27
Identity = 164/382 (42.93%), Postives = 187/382 (48.95%), Query Frame = 2 
Query:  227 MFDYGNRSSSPLEPQLPELLQ--SKMSMPPPTPRSSARQQPGHPSTAGRRSPFLPT--------ATVPMRIPTVSAASMMAQQG--GSNSRRARRGIQITISAASTS-----TSALPARRERSSSSRSAARPTSEDSGIKAHRRRRLIPQTCEHCRMTFIPVKGDPVGRPAAAAGAGAAGGEADAASRCGSVGSSSGSSDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKH-------AAAAADDNKNSGKE-------KDDGPFSPLSQLISNRTAPPSPASVSTDGRSNSSGAYNSNNSGYGRSAARPRFEDGGGXXXXXXXXXXDGSLPQESGFCSGDCKMSYLLTNPAAVRXXXXXXXXXAAVRAAQIEDSIERSRR 1279
            MF+ G RSSSPLEP+ P  LQ   K +MPPPTPR  A                              PMRIPTVS ASMM Q G  G N RR RRGIQITIS    S     +S + A     S S+       ED   KAHRRRRL+P++CEHCRM +IP       + AAAA                       S +  XXXXXXXXXXXXXXXXXXXX  XXXXXX         AA  +D++ NS  E       K +GPFSPLSQLI +RTA PSPAS                                  XXXX        +  +E  FCSG+CKMSY+L NPAA+R          A+RAAQIE SIERSRR
Sbjct:    1 MFESGTRSSSPLEPRFPNGLQHVKKTNMPPPTPRHPAXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPMRIPTVSEASMMGQVGARGGNMRRGRRGIQITISTNKGSFFLHDSSHVIAAAANGSGSKG------EDDDAKAHRRRRLVPRSCEHCRMPYIP-------KSAAAAPVSXXXXXXXXXXXXXXXXXEEASVEXXXXXXXXXXXXXXXXXXXXXXEGXXXXXXXXXXXXXXXAAKTSDNDNNSKSESGSCDKGKKEGPFSPLSQLIGDRTARPSPASSXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXSNRGDNTDANSEEGRFCSGECKMSYMLMNPAAIRRRRAAHAARMAMRAAQIEVSIERSRR 363
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1357.2717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXJ1_ECTSI8.790e-2742.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1357contigL-elsbetiae_contig1357:11711..14805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_001870.1
Exons4
Model size1306
Cds size1080
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1357.2717.1prot_L-elsbetiae_contig1357.2717.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1357 11711..14579 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815523.4097114-CDS-L-elsbetiae_contig1357:11710..124391622815523.4097114-CDS-L-elsbetiae_contig1357:11710..12439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1357 11711..12439 -
1691682939.8457513-CDS-L-elsbetiae_contig1357:11710..124391691682939.8457513-CDS-L-elsbetiae_contig1357:11710..12439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1357 11711..12439 -
1622815523.4208567-CDS-L-elsbetiae_contig1357:12667..128411622815523.4208567-CDS-L-elsbetiae_contig1357:12667..12841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1357 12668..12841 -
1691682939.8560367-CDS-L-elsbetiae_contig1357:12667..128411691682939.8560367-CDS-L-elsbetiae_contig1357:12667..12841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1357 12668..12841 -
1622815523.4316788-CDS-L-elsbetiae_contig1357:14045..141451622815523.4316788-CDS-L-elsbetiae_contig1357:14045..14145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1357 14046..14145 -
1691682939.867553-CDS-L-elsbetiae_contig1357:14045..141451691682939.867553-CDS-L-elsbetiae_contig1357:14045..14145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1357 14046..14145 -
1622815523.4409742-CDS-L-elsbetiae_contig1357:14502..145791622815523.4409742-CDS-L-elsbetiae_contig1357:14502..14579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1357 14503..14579 -
1691682939.8755262-CDS-L-elsbetiae_contig1357:14502..145791691682939.8755262-CDS-L-elsbetiae_contig1357:14502..14579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1357 14503..14579 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815523.4505484-UTR-L-elsbetiae_contig1357:14579..148051622815523.4505484-UTR-L-elsbetiae_contig1357:14579..14805Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1357 14580..14805 -
1691682939.8857217-UTR-L-elsbetiae_contig1357:14579..148051691682939.8857217-UTR-L-elsbetiae_contig1357:14579..14805Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1357 14580..14805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1357.2717.1

>prot_L-elsbetiae_contig1357.2717.1 ID=prot_L-elsbetiae_contig1357.2717.1|Name=mRNA_L-elsbetiae_contig1357.2717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=360bp
MFDYGNRSSSPLEPQLPELLQSKMSMPPPTPRSSARQQPGHPSTAGRRSP
FLPTATVPMRIPTVSAASMMAQQGGSNSRRARRGIQITISAASTSTSALP
ARRERSSSSRSAARPTSEDSGIKAHRRRRLIPQTCEHCRMTFIPVKGDPV
GRPAAAAGAGAAGGEADAASRCGSVGSSSGSSDGGGSVDGGAVVLEGSLA
GGSSLGSASSLAAKHAAAAADDNKNSGKEKDDGPFSPLSQLISNRTAPPS
PASVSTDGRSNSSGAYNSNNSGYGRSAARPRFEDGGGGGGGDGGNGGDGS
LPQESGFCSGDCKMSYLLTNPAAVRRRRAAAAARAAVRAAQIEDSIERSR
RAAAAATVAA
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mRNA from alignment at L-elsbetiae_contig1357:11711..14805-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1357.2717.1 ID=mRNA_L-elsbetiae_contig1357.2717.1|Name=mRNA_L-elsbetiae_contig1357.2717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3095bp|location=Sequence derived from alignment at L-elsbetiae_contig1357:11711..14805- (Laminarionema elsbetiae ELsaHSoW15)
ACCAGAGACAACAGCCCAAGACAGCGGAAACCGGAGAAAAACAGCCCACG
ACTCTATCGCAACCACTGCACGACACTGATCCACGTTCCCGGCACGGGAA
TCTGACCTTGTCGACGAGGATCTGCTCTCGCGAGGTTTTTGCAGGGTTTT
TGAGTCAGTGTGTCACCAGGCTGGTGTCACATCAGTGAAGACCGAGGGAT
CGTCGGATCGAAAGAAGACTTTCACAATGTTTGACTACGGCAACCGTTCA
TCCTCCCCCCTCGAGCCTCAGCTCCCGGAGCTCCTGCAGTCGAAGATGAG
CATGTGAGTGGGGCATCCCTGGCGGTGGATAAAAGCCCGCGCACTCGATC
TGCATCTTTGAATTTTGAAAGAGGTTTTATCGCGCGGGATTCGATCCGAT
CTCCCCGACCTCCCGGGGGGGCAGCCGCCCCCGGCGCGGAAACAAGCGCG
GATCCTCTCGATAACGCACGTGGCATTCAGTCTCGCCGGTGGCAGGGGTT
GGGTTCGGTTGGCGCTCGGCTGTCGGCGGGGGGGACAAAGTTACCTCTGC
CTGATTTTTTCAGGTCCGAAAACGGAACCAACAAAAAAACCGCGCTGCTC
TCTCTTTGGTCTCACAAAGACTTTTCTCTTCTTTTTGCTTTTTCCGCACA
ACAACAACAGGCCACCTCCGACACCACGAAGCTCGGCAAGGCAGCAGCCG
GGGCACCCCTCCACGGCTGGCCGAAGGTCTCCCTTTTTACCCACGGCAAC
AGTACCGATGGTGAGAGCCTGCCGTCCGCTCTACTTCTTACTTCGAGTAC
ATACACCTCGTTTCTGGTTTTGTCAGCAGATCAAGTCGTTCCGAAAAAAC
AAAAGAGCAGCATTTCCCCTGTGCGGAAAACGCGCCAAGACTTCAACTCC
GCAGTCGTTGAGTCATTCTTAGCAACCGCCCTTGAGCACACCGCCGCCGG
GTGTGCCGCGTCGTGACTCCTTTGCTGGTGCTTCCGACTGCTGTTGGTCT
TTTTAGTTCTCGCGCGCATCGGTTTTTGATTTCGAATAAATATGCGTAGA
TGCAGCCCAGCAGAGATGGTTTTGAGTCTTGGGGCGGTATCCAATACAAC
TTCATCGAACTTCCCGAAAAGCGGTGAAGCTTGATGGTGAAGAAATACAA
AGTGCCGTGTGTGCTTCATCACGGCTACCGAGAGGGCCGCCACCACCCTG
CCCCATCCGCCGAGACGAGAGAGTGCCCCCATGCGCTCCGGCCGCTTTTT
GTTTTTTGAATTTGTGCTTCGCGCGCGCTTGACAACAGTATACCGATTCC
GTGTGCAGCGTGGTGAATCTAGATAAATCTCTCGTGTACTTCCCAACGTC
TTCTTAGATACCCGTCGGATTTCAAAAAAAGTTGCACTACTTTTTTTGAA
CCCAGGCAAACAAACTGCTTTTTTTTTCTCGGCTGCTGATTATGAATTCG
ATAAACAGCCCACCCGCTGCCAGCGCACTGCTGCATACGCTATGCATCTA
TCTAGACGCATACATCTACACAGCAGTCTAGATACGTAAGTACGACTGGA
GTACAGCCATCAATCAGTGAGAGCCCGCAATCTTTTTTGGCAACAAATGT
GTCTATCTGCCCGGCCCGGTTCGCTGACGTCCCGGCTGCCGAACACTCAC
ATGCAGTTGCCGCGATGTCTTTCTCATTTAAAAATTCCCTCATATGTGTC
TGCCGGCTAGTTTCCCTTTCTCCGAGCTTTACACGTGCAAGTGCAGAGCT
GTATAGCTACATGCATACGTGCATCATATACATTATACCACGCACGCACA
CACAACTGCGTTTCGGTTCACAACTCAGCGTTATTTGAAATCGTAACACG
CATTTTCCTGCTCTCGAACCGTCGCCCCGGGCGGACGGAACAGCACCCAT
GGACCAACCAAGTTAACCGCCCCTCCCATCTCCCCTCTCCCCCCCCCCCC
CGCTCTTGCAACAGCGCATCCCCACAGTCTCGGCGGCCTCGATGATGGCG
CAGCAGGGCGGCAGCAACTCGCGCCGCGCGAGACGCGGCATCCAGATCAC
CATCAGCGCCGCCTCCACCTCCACCTCGGCGCTGCCGGCCCGACGCGAGC
GCAGCAGCAGCAGCCGCAGCGCCGCCAGGCCCACGTCCGTCTACGGGAAG
AACGGCGCCGGCCGCGGCGCCTACCACTCCTTCACCGTGTGCACGGCTGA
GGACTGCGAAGTGTGCAACTACACCGGGGACGGTGACGGCGGGGACAGGG
CGGCGGCGAGCGACTCCGCCTCCCGGCGCCAGGGCTCCTTCTTCCTCCAC
GAGAACAACACCCTCCCCGTCACGAGCGAGAGCGACAGGACCTGCATGGT
GGGCAACGGCGGCAAGGAGGACAGCGGCATCAAGGCCCACCGGCGACGGC
GCCTCATCCCGCAGACGTGCGAGCACTGCCGGATGACATTCATCCCCGTC
AAGGGGGACCCGGTGGGGCGGCCGGCGGCGGCGGCGGGGGCGGGGGCGGC
GGGGGGGGAAGCCGACGCGGCGTCTCGGTGCGGCTCGGTCGGAAGCAGCA
GCGGGAGCAGCGACGGAGGCGGGTCAGTGGACGGCGGTGCCGTTGTGCTG
GAGGGGAGCTTGGCCGGCGGCAGTAGCTTGGGCTCGGCGTCGTCGTTGGC
AGCAAAGCACGCCGCCGCCGCCGCCGACGACAACAAGAACAGCGGCAAGG
AAAAGGACGACGGGCCGTTCTCGCCCTTGTCTCAGCTCATCAGCAACAGG
ACCGCTCCCCCTTCGCCAGCGTCCGTCAGCACTGACGGCCGATCAAACAG
CAGCGGGGCGTACAACAGCAACAACTCGGGCTACGGCAGGAGCGCGGCCA
GGCCCAGGTTCGAGGATGGTGGCGGCGGCGGCGGCGGAGACGGCGGCAAC
GGCGGCGACGGCTCTCTCCCGCAAGAGAGCGGCTTCTGCTCCGGCGACTG
CAAGATGAGCTACCTGCTCACCAACCCCGCCGCCGTGCGCCGGCGGCGGG
CGGCGGCGGCGGCCCGCGCCGCCGTGCGCGCGGCGCAGATCGAGGACTCG
ATCGAGAGGTCGAGGAGGGCGGCGGCGGCGGCGACGGTGGCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1357:11711..14805-

>mRNA_L-elsbetiae_contig1357.2717.1 ID=mRNA_L-elsbetiae_contig1357.2717.1|Name=mRNA_L-elsbetiae_contig1357.2717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2160bp|location=Sequence derived from alignment at L-elsbetiae_contig1357:11711..14805- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGACTACGGCAACCGTTCATCCTCCCCCCTCGAGCCTCAGCTCCC
GGAGCTCCTGCAGTCGAAGATGAGCATATGTTTGACTACGGCAACCGTTC
ATCCTCCCCCCTCGAGCCTCAGCTCCCGGAGCTCCTGCAGTCGAAGATGA
GCATGCCACCTCCGACACCACGAAGCTCGGCAAGGCAGCAGCCGGGGCAC
CCCTCCACGGCTGGCCGAAGGTCTCCCTTTTTACCCACGGCAACAGTACC
GATGGCCACCTCCGACACCACGAAGCTCGGCAAGGCAGCAGCCGGGGCAC
CCCTCCACGGCTGGCCGAAGGTCTCCCTTTTTACCCACGGCAACAGTACC
GATGCGCATCCCCACAGTCTCGGCGGCCTCGATGATGGCGCAGCAGGGCG
GCAGCAACTCGCGCCGCGCGAGACGCGGCATCCAGATCACCATCAGCGCC
GCCTCCACCTCCACCTCGGCGCTGCCGGCCCGACGCGAGCGCAGCAGCAG
CAGCCGCAGCGCCGCCAGGCCCACGTCCCGCATCCCCACAGTCTCGGCGG
CCTCGATGATGGCGCAGCAGGGCGGCAGCAACTCGCGCCGCGCGAGACGC
GGCATCCAGATCACCATCAGCGCCGCCTCCACCTCCACCTCGGCGCTGCC
GGCCCGACGCGAGCGCAGCAGCAGCAGCCGCAGCGCCGCCAGGCCCACGT
CCGAGGACAGCGGCATCAAGGCCCACCGGCGACGGCGCCTCATCCCGCAG
ACGTGCGAGCACTGCCGGATGACATTCATCCCCGTCAAGGGGGACCCGGT
GGGGCGGCCGGCGGCGGCGGCGGGGGCGGGGGCGGCGGGGGGGGAAGCCG
ACGCGGCGTCTCGGTGCGGCTCGGTCGGAAGCAGCAGCGGGAGCAGCGAC
GGAGGCGGGTCAGTGGACGGCGGTGCCGTTGTGCTGGAGGGGAGCTTGGC
CGGCGGCAGTAGCTTGGGCTCGGCGTCGTCGTTGGCAGCAAAGCACGCCG
CCGCCGCCGCCGACGACAACAAGAACAGCGGCAAGGAAAAGGACGACGGG
CCGTTCTCGCCCTTGTCTCAGCTCATCAGCAACAGGACCGCTCCCCCTTC
GCCAGCGTCCGTCAGCACTGACGGCCGATCAAACAGCAGCGGGGCGTACA
ACAGCAACAACTCGGGCTACGGCAGGAGCGCGGCCAGGCCCAGGTTCGAG
GATGGTGGCGGCGGCGGCGGCGGAGACGGCGGCAACGGCGGCGACGGCTC
TCTCCCGCAAGAGAGCGGCTTCTGCTCCGGCGACTGCAAGATGAGCTACC
TGCTCACCAACCCCGCCGCCGTGCGCCGGCGGCGGGCGGCGGCGGCGGCC
CGCGCCGCCGTGCGCGCGGCGCAGATCGAGGACTCGATCGAGAGGTCGAG
GAGGGCGGCGGCGGCGGCGACGGTGGCGGCGGAGGACAGCGGCATCAAGG
CCCACCGGCGACGGCGCCTCATCCCGCAGACGTGCGAGCACTGCCGGATG
ACATTCATCCCCGTCAAGGGGGACCCGGTGGGGCGGCCGGCGGCGGCGGC
GGGGGCGGGGGCGGCGGGGGGGGAAGCCGACGCGGCGTCTCGGTGCGGCT
CGGTCGGAAGCAGCAGCGGGAGCAGCGACGGAGGCGGGTCAGTGGACGGC
GGTGCCGTTGTGCTGGAGGGGAGCTTGGCCGGCGGCAGTAGCTTGGGCTC
GGCGTCGTCGTTGGCAGCAAAGCACGCCGCCGCCGCCGCCGACGACAACA
AGAACAGCGGCAAGGAAAAGGACGACGGGCCGTTCTCGCCCTTGTCTCAG
CTCATCAGCAACAGGACCGCTCCCCCTTCGCCAGCGTCCGTCAGCACTGA
CGGCCGATCAAACAGCAGCGGGGCGTACAACAGCAACAACTCGGGCTACG
GCAGGAGCGCGGCCAGGCCCAGGTTCGAGGATGGTGGCGGCGGCGGCGGC
GGAGACGGCGGCAACGGCGGCGACGGCTCTCTCCCGCAAGAGAGCGGCTT
CTGCTCCGGCGACTGCAAGATGAGCTACCTGCTCACCAACCCCGCCGCCG
TGCGCCGGCGGCGGGCGGCGGCGGCGGCCCGCGCCGCCGTGCGCGCGGCG
CAGATCGAGGACTCGATCGAGAGGTCGAGGAGGGCGGCGGCGGCGGCGAC
GGTGGCGGCG
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