mRNA_L-elsbetiae_contig13555.2713.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig13555.2713.1
Unique Name	mRNA_L-elsbetiae_contig13555.2713.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig13555.2713.1 vs. uniprot
Match: D8LHF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF1_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 4.490e-32
Identity = 102/123 (82.93%), Postives = 106/123 (86.18%), Query Frame = 2

Query:  206 LSLACRKLPPMRIIALPQRLTKLHFQGGFPEGFLDNAAFPPSLKDLCLGDGFNEGVQGVLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFFFSNHVPLYSVAWPKGCVVRAAGSTMCR 574
            LSL CR LP +R   L  RL KLHFQGGFP GFLDNAAFP SLK+L LGDGFNEG+QGV WXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QFFFSNHVPL SVAWP+GC VRAAGSTM R
Sbjct:  667 LSLVCRVLPLLRRTPLSPRLIKLHFQGGFPTGFLDNAAFPASLKELSLGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQFFFSNHVPLQSVAWPRGCEVRAAGSTMSR 789

[Close]

BLAST of mRNA_L-elsbetiae_contig13555.2713.1 vs. uniprot
Match: A0A6H5JL40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL40_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.960e-26
Identity = 95/123 (77.24%), Postives = 98/123 (79.67%), Query Frame = 2

Query:  206 LSLACRKLPPMRIIALPQRLTKLHFQGGFPEGFLDNAAFPPSLKDLCLGDGFNEGVQGVLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFFFSNHVPLYSVAWPKGCVVRAAGSTMCR 574
            LSL CR LP +R   L  RL KLHFQGGFP GFLDNAAFP SLK+L LGDGFNEG+QGV WXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  QFFFSNHVPL        C VRAAGSTM R
Sbjct:  630 LSLVCRVLPLLRRTPLSPRLIKLHFQGGFPTGFLDNAAFPASLKELTLGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGQFFFSNHVPLQXXXXXXXCEVRAAGSTMSR 752

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig13555.2713.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig13555.2713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LHF1_ECTSI	4.490e-32	82.93	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JL40_9PHAE	3.960e-26	77.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig13555	contig	L-elsbetiae_contig13555:3013..4929 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	943
Cds size	609
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig13555.2713.1	prot_L-elsbetiae_contig13555.2713.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig13555 3345..4929 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815523.0510154-UTR-L-elsbetiae_contig13555:3012..3344	1622815523.0510154-UTR-L-elsbetiae_contig13555:3012..3344	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig13555 3013..3344 -
1691682939.5953817-UTR-L-elsbetiae_contig13555:3012..3344	1691682939.5953817-UTR-L-elsbetiae_contig13555:3012..3344	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig13555 3013..3344 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815523.0669303-CDS-L-elsbetiae_contig13555:3344..3547	1622815523.0669303-CDS-L-elsbetiae_contig13555:3344..3547	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig13555 3345..3547 -
1691682939.610748-CDS-L-elsbetiae_contig13555:3344..3547	1691682939.610748-CDS-L-elsbetiae_contig13555:3344..3547	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig13555 3345..3547 -
1622815523.0825856-CDS-L-elsbetiae_contig13555:3782..3927	1622815523.0825856-CDS-L-elsbetiae_contig13555:3782..3927	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig13555 3783..3927 -
1691682939.6266046-CDS-L-elsbetiae_contig13555:3782..3927	1691682939.6266046-CDS-L-elsbetiae_contig13555:3782..3927	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig13555 3783..3927 -
1622815523.0963442-CDS-L-elsbetiae_contig13555:4668..4929	1622815523.0963442-CDS-L-elsbetiae_contig13555:4668..4929	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig13555 4669..4929 -
1691682939.6454422-CDS-L-elsbetiae_contig13555:4668..4929	1691682939.6454422-CDS-L-elsbetiae_contig13555:4668..4929	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig13555 4669..4929 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig13555:3013..4929-
coding sequence from alignment at L-elsbetiae_contig13555:3013..4929-

protein sequence of mRNA_L-elsbetiae_contig13555.2713.1

>prot_L-elsbetiae_contig13555.2713.1 ID=prot_L-elsbetiae_contig13555.2713.1|Name=mRNA_L-elsbetiae_contig13555.2713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
AGLWERLQQAHCAGPLAPPPPGNPVRPQLQPIPGRRFVAGIASRCFSRLG
VRPPSGCRWRGVARDARVAVSCLPQASPDEDHCSSSEADEASLPGRLSGG
LLGQRGVSSIPQGSVSRRRLQRGSAGGALAARAREADVRAHLQAVRGQRG
VAEGHRAARLRTVLFQQPRSPVQRGVAQGVRGPRGGLHHVPPVNTRAGNC
RS*

mRNA from alignment at L-elsbetiae_contig13555:3013..4929-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig13555.2713.1 ID=mRNA_L-elsbetiae_contig13555.2713.1|Name=mRNA_L-elsbetiae_contig13555.2713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1917bp|location=Sequence derived from alignment at L-elsbetiae_contig13555:3013..4929- (Laminarionema elsbetiae ELsaHSoW15)
GCTGGCCTTTGGGAAAGGCTTCAACAAGCCCATTGCGCGGGCCCACTGGC
CCCGCCGCCTCCAGGAAATCCGGTTCGGCCGCAGCTTCAGCCAATACCTG
GGAGGCGTTTCGTGGCCGGGATCGCTTCGCGTTGTTTCTCTCGGCTGGGA
GTTCGACCACCCTCTGGATGCCGGTGGCGTGGAGTGGCCCGAGATGCTCG
AGTCGCTGTCTCTTGCCTGCCGCAAGCTTCCCCCGATGAGGATCATTGCT
CTTCCTCAGAGGTACATACGTATATGTTGTTGACAGTGCCGCTTACAGTC
CCGTCGTTGAAGTGGCCCGGGATGCTTGAGTCGCTGTCTCTTGTGCCTGC
CGGAAGCTTCCCCCGATGAGGCGCATTGCTTTCCCTCAGAGGTACATAAT
TGTTGACTGTCAGCGTGACAGTCCCGTTGTTGTTTGTTGGTGTTGTTGTT
GGTGTTGTTGGTGTTCGTGTTGTTGCTGCTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTTTTGTTGTTCTTGATGTTGTGGCTGGTTTTGCTGCTG
CTGCTGTTGTTGTTGTTGTTGTGGATGTTGCTGCCTTTGCTGCAGCTGCT
GTTTTGGTTACGGCTGTTCTCTCTGGCTCCTGCTTCCAGTCGATGTTTCA
TTTTCGCCGTTGGCGACGGCGAAAGCCCCGGAGCGTCTCTACCCAATCAC
CTTGCCAGCCAGTCACCCGAAAAGTCTGCTGCCCAGCCTATAACTCCCTC
TACCCTTCCCACGCTTGTCTTTCGGAACCAGCTCACTCTCCCGTTCTCAC
GCTTGTCTTTTGGAACCAACTCACTCTCCCCTCCCGGCGCTTGTCTATCC
TTCCCACGCTTGTCTTTTGGAAGCAATTCCCTCTACCCTTCCCACGCTTG
TGGTTTCGAACCAATTCACTACCCGTTCCCACGCTTCGTCTTCTCGAACC
GACTGCTGTCCCATATATATATATGTATATATAATATATATATTACATCC
AGGCTGACGAAGCTTCACTTCCAGGGAGGCTTTCCGGAGGGCTTCTTGGA
CAACGCGGCGTTTCCTCCATCCCTCAAGGATCTGTGTCTCGGAGACGGCT
TCAACGAGGGAGTGCAGGGGGTGCTCTGGCCGCCAGGGCTCGAGAAGGTG
AGGGTGCCCGTTATTGTTGACAGTCCCGCGACATTCCCGTTGTTGTTGTT
GTTGTTGCTGTTGTTGTTGTTGTTTCCCCTCCTGCGGTGGCGGTAAAAGC
CCCCCTCCGTGCACACATTACCTAGACACTGACGGACCCCCGTTGTGTGC
CTTTTCCGGCTCGCTGAACCTGTGTCCGTCCTCAACCAACTGCTGGGCTC
TTCTCTTCGTGTGGGGCACTTTCTTCCCCAAGCTGACGTTCGGGCGCACC
TACAAGCAGTGCGTGGACAGCGTGGAGTGGCCGAGGGGCATCGAGCAGCT
CGTCTTCGGACAGTTCTTTTTCAGCAACCACGTTCCCCTGTACAGCGTGG
CGTGGCCCAAGGGGTGCGTGGTCCGCGCGGCGGGCTCCACCATGTGCCGC
CCGTGAACACCCGGGCGGGGAATTGCCGCTCTTGAACACCGCGCGCGGTA
TTGGGAAAGTTGTATCGCGACACAATTACGATAATACGGGAACCGGGCAG
ACAACCCCGTCGCGTCAGCTCTCTCTTCGAACATACTTTCTTTGTATGCG
TACCAGGTAACAAAGATGGGAAACTCCCTGCACTGAATGAAGGCGGGGCT
CCGTTCTCACACACCGTCAGAAAGTAGGCTCCGCTCTCACTACAAGAAGT
ACGTATGTAAAAGGCGTGTTGAAAACCTCGGCACAGGTACTGTTGTGCGT
CAAATGTATTTGTGCCGCGCACATACGTAGCATCTCTCATCATGTGCGTT
TGGATCAAAGCCTAGAG

Coding sequence (CDS) from alignment at L-elsbetiae_contig13555:3013..4929-

>mRNA_L-elsbetiae_contig13555.2713.1 ID=mRNA_L-elsbetiae_contig13555.2713.1|Name=mRNA_L-elsbetiae_contig13555.2713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig13555:3013..4929- (Laminarionema elsbetiae ELsaHSoW15)
GCTGGCCTTTGGGAAAGGCTTCAACAAGCCCATTGCGCGGGCCCACTGGC
CCCGCCGCCTCCAGGAAATCCGGTTCGGCCGCAGCTTCAGCCAATACCTG
GGAGGCGTTTCGTGGCCGGGATCGCTTCGCGTTGTTTCTCTCGGCTGGGA
GTTCGACCACCCTCTGGATGCCGGTGGCGTGGAGTGGCCCGAGATGCTCG
AGTCGCTGTCTCTTGCCTGCCGCAAGCTTCCCCCGATGAGGATCATTGCT
CTTCCTCAGAGGCTGGCCTTTGGGAAAGGCTTCAACAAGCCCATTGCGCG
GGCCCACTGGCCCCGCCGCCTCCAGGAAATCCGGTTCGGCCGCAGCTTCA
GCCAATACCTGGGAGGCGTTTCGTGGCCGGGATCGCTTCGCGTTGTTTCT
CTCGGCTGGGAGTTCGACCACCCTCTGGATGCCGGTGGCGTGGAGTGGCC
CGAGATGCTCGAGTCGCTGTCTCTTGCCTGCCGCAAGCTTCCCCCGATGA
GGATCATTGCTCTTCCTCAGAGGCTGACGAAGCTTCACTTCCAGGGAGGC
TTTCCGGAGGGCTTCTTGGACAACGCGGCGTTTCCTCCATCCCTCAAGGA
TCTGTGTCTCGGAGACGGCTTCAACGAGGGAGTGCAGGGGGTGCTCTGGC
CGCCAGGGCTCGAGAAGGCTGACGAAGCTTCACTTCCAGGGAGGCTTTCC
GGAGGGCTTCTTGGACAACGCGGCGTTTCCTCCATCCCTCAAGGATCTGT
GTCTCGGAGACGGCTTCAACGAGGGAGTGCAGGGGGTGCTCTGGCCGCCA
GGGCTCGAGAAGCTGACGTTCGGGCGCACCTACAAGCAGTGCGTGGACAG
CGTGGAGTGGCCGAGGGGCATCGAGCAGCTCGTCTTCGGACAGTTCTTTT
TCAGCAACCACGTTCCCCTGTACAGCGTGGCGTGGCCCAAGGGGTGCGTG
GTCCGCGCGGCGGGCTCCACCATGTGCCGCCCGTGAACACCCGGGCGGGG
AATTGCCGCTCTTGACTGACGTTCGGGCGCACCTACAAGCAGTGCGTGGA
CAGCGTGGAGTGGCCGAGGGGCATCGAGCAGCTCGTCTTCGGACAGTTCT
TTTTCAGCAACCACGTTCCCCTGTACAGCGTGGCGTGGCCCAAGGGGTGC
GTGGTCCGCGCGGCGGGCTCCACCATGTGCCGCCCGTGAACACCCGGGCG
GGGAATTGCCGCTCTTGA