mRNA_L-elsbetiae_contig13550.2711.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13550.2711.1
Unique NamemRNA_L-elsbetiae_contig13550.2711.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13550.2711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13550contigL-elsbetiae_contig13550:2980..3320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size341
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13550.2711.1prot_L-elsbetiae_contig13550.2711.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13550 2985..3317 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.8463824-UTR-L-elsbetiae_contig13550:2979..29841622815522.8463824-UTR-L-elsbetiae_contig13550:2979..2984Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13550 2980..2984 +
1691682939.4858925-UTR-L-elsbetiae_contig13550:2979..29841691682939.4858925-UTR-L-elsbetiae_contig13550:2979..2984Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13550 2980..2984 +
1622815522.8838215-UTR-L-elsbetiae_contig13550:3317..33201622815522.8838215-UTR-L-elsbetiae_contig13550:3317..3320Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13550 3318..3320 +
1691682939.5063386-UTR-L-elsbetiae_contig13550:3317..33201691682939.5063386-UTR-L-elsbetiae_contig13550:3317..3320Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13550 3318..3320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.868358-CDS-L-elsbetiae_contig13550:2984..33171622815522.868358-CDS-L-elsbetiae_contig13550:2984..3317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13550 2985..3317 +
1691682939.4975293-CDS-L-elsbetiae_contig13550:2984..33171691682939.4975293-CDS-L-elsbetiae_contig13550:2984..3317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13550 2985..3317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13550.2711.1

>prot_L-elsbetiae_contig13550.2711.1 ID=prot_L-elsbetiae_contig13550.2711.1|Name=mRNA_L-elsbetiae_contig13550.2711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MLPPPPPSALAHPYACEMMLVLLCLLLLLWGGNYCIVFDSNPPHPLLIPV
PRRIEIKSTVLFKHKHASFCCRLLRSDDVPSPPLQSTRPNRNRNRNRNRN
RNRNPNQRIK*
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mRNA from alignment at L-elsbetiae_contig13550:2980..3320+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13550.2711.1 ID=mRNA_L-elsbetiae_contig13550.2711.1|Name=mRNA_L-elsbetiae_contig13550.2711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=341bp|location=Sequence derived from alignment at L-elsbetiae_contig13550:2980..3320+ (Laminarionema elsbetiae ELsaHSoW15)
GGTACATGCTGCCTCCACCACCGCCATCAGCACTTGCACACCCCTACGCG
TGTGAGATGATGCTGGTGCTACTGTGTTTGCTGTTGTTGCTGTGGGGGGG
AAACTATTGCATTGTGTTCGACTCTAATCCTCCTCATCCTTTGCTCATTC
CAGTCCCGCGACGGATCGAGATAAAGAGCACCGTGTTGTTCAAGCATAAG
CATGCTTCCTTTTGCTGCCGTCTTCTACGGAGCGACGACGTGCCCAGCCC
GCCACTCCAGTCTACTCGGCCGAACCGGAACCGGAACCGGAACCGGAACC
GGAACCGGAACCGGAACCCGAACCAGCGTATTAAATAGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13550:2980..3320+

>mRNA_L-elsbetiae_contig13550.2711.1 ID=mRNA_L-elsbetiae_contig13550.2711.1|Name=mRNA_L-elsbetiae_contig13550.2711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig13550:2980..3320+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCCTCCACCACCGCCATCAGCACTTGCACACCCCTACGCGTGTGA
GATGATGCTGGTGCTACTGTGTTTGCTGTTGTTGCTGTGGGGGGGAAACT
ATTGCATTGTGTTCGACTCTAATCCTCCTCATCCTTTGCTCATTCCAGTC
CCGCGACGGATCGAGATAAAGAGCACCGTGTTGTTCAAGCATAAGCATGC
TTCCTTTTGCTGCCGTCTTCTACGGAGCGACGACGTGCCCAGCCCGCCAC
TCCAGTCTACTCGGCCGAACCGGAACCGGAACCGGAACCGGAACCGGAAC
CGGAACCGGAACCCGAACCAGCGTATTAAATAGATGCTGCCTCCACCACC
GCCATCAGCACTTGCACACCCCTACGCGTGTGAGATGATGCTGGTGCTAC
TGTGTTTGCTGTTGTTGCTGTGGGGGGGAAACTATTGCATTGTGTTCGAC
TCTAATCCTCCTCATCCTTTGCTCATTCCAGTCCCGCGACGGATCGAGAT
AAAGAGCACCGTGTTGTTCAAGCATAAGCATGCTTCCTTTTGCTGCCGTC
TTCTACGGAGCGACGACGTGCCCAGCCCGCCACTCCAGTCTACTCGGCCG
AACCGGAACCGGAACCGGAACCGGAACCGGAACCGGAACCGGAACCCGAA
CCAGCGTATTAAATAG
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