mRNA_L-elsbetiae_contig13526.2698.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13526.2698.1
Unique NamemRNA_L-elsbetiae_contig13526.2698.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13526.2698.1 vs. uniprot
Match: D7G8W9_ECTSI (CPSF_A domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W9_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 4.350e-57
Identity = 98/120 (81.67%), Postives = 101/120 (84.17%), Query Frame = 1
Query:    1 ARYCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRWVGWF-LSEVFRWRVLLLSAFHWTKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDIDLASLF 357
            ARYCLLAGTLDGGLGA+LPVDERVFRRLYALQGIMSNALGHNGAANPR    F     FR+          TKQNMLDGSLLWRFVGLDA+TQHDLTRAIGTTVDRVMANLLDIDLASLF
Sbjct:  145 ARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLFDHGPTFRYE---------TKQNMLDGSLLWRFVGLDAKTQHDLTRAIGTTVDRVMANLLDIDLASLF 255          
BLAST of mRNA_L-elsbetiae_contig13526.2698.1 vs. uniprot
Match: A0A835Z873_9STRA (Cleavage/polyadenylation specificity factor, A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z873_9STRA)

HSP 1 Score: 106 bits (265), Expect = 9.120e-26
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    4 RYCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRWVGWFLSEVFRWRVLLLSAFHWTKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDID 342
            R+    G LDG +  + P++ER FRRLYALQG+M NAL H    NPR    F S++        +A     + +LDG+LLWRFV L A+ Q +LTRAIGTTVD V+ +LLD+D
Sbjct:  161 RFGAAVGGLDGSVALLAPLEERAFRRLYALQGVMCNALEHGAGVNPRGARLFRSQL----PAAAAAEGGRMKGVLDGALLWRFVSLPAQVQCELTRAIGTTVDAVLLSLLDVD 269          
BLAST of mRNA_L-elsbetiae_contig13526.2698.1 vs. uniprot
Match: A0A7S2D6V7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D6V7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.820e-25
Identity = 58/113 (51.33%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    4 RYCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRWVGWFLSEVFRWRVLLLSAFHWTKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDID 342
            R+     +LDG  GA++PVDE  FRRLYALQGI+ NAL H  A NPR         FR     L+     ++ +LDG+LLWRFV LDAR Q  LT AIGTTV+ V++ L DID
Sbjct:  116 RFASWFASLDGAAGAVVPVDEHSFRRLYALQGILVNALPHTAALNPR--------AFRLARRHLTDIAPRQKKILDGALLWRFVSLDAREQARLTCAIGTTVENVLSALRDID 220          
BLAST of mRNA_L-elsbetiae_contig13526.2698.1 vs. uniprot
Match: A0A7S2D575_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D575_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.470e-24
Identity = 58/113 (51.33%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    4 RYCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRWVGWFLSEVFRWRVLLLSAFHWTKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDID 342
            R+     +LDG  GA++PVDE  FRRLYALQGI+ NAL H  A NPR         FR     L+     ++ +LDG+LLWRFV LDAR Q  LT AIGTTV+ V++ L DID
Sbjct:  350 RFASWFASLDGAAGAVVPVDEHSFRRLYALQGILVNALPHTAALNPR--------AFRLARRHLTDIAPRQKKILDGALLWRFVSLDAREQARLTCAIGTTVENVLSALRDID 454          
BLAST of mRNA_L-elsbetiae_contig13526.2698.1 vs. uniprot
Match: K8YVP3_NANGC (Cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YVP3_NANGC)

HSP 1 Score: 100 bits (250), Expect = 8.200e-23
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   13 LLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRWVGWFLSEVFRWRVLLLSAFHWTKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDIDL 345
            ++ G+++GG+GA++PV+E+V+RRLYALQ +M NAL H GA NPR  G+ L E   W           K+  LDG LLWRF GL    Q DL  AIGT+ + V+ +LL++D+
Sbjct:  289 MVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPR--GFRLVEARGWA-------QGRKKGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDM 390          
BLAST of mRNA_L-elsbetiae_contig13526.2698.1 vs. uniprot
Match: A0A4D9CM95_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM95_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.370e-22
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   13 LLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRWVGWFLSEVFRWRVLLLSAFHWTKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDIDL 345
            ++ G+++GG+GA++PV+E+V+RRLYALQ +M NAL H GA NPR  G+ L E   W           K+  LDG LLWRF GL    Q DL  AIGT+ + V+ +LL++D+
Sbjct: 1845 MVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPR--GFRLVEARGWA-------QGRKKGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDM 1946          
BLAST of mRNA_L-elsbetiae_contig13526.2698.1 vs. uniprot
Match: A0A7S1BI36_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BI36_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.950e-22
Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    4 RYCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRWVGWFLSEVFRWRVLLLSAFHWTKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDIDLASL 354
            R+ +  GT+DGG GA+ PV+ER FRRLYALQG++ NAL  +GA N R  GW L +    R    S     ++ +LDG LL R+  L    Q ++ RAIGTTVD +M NLL++D A +
Sbjct:  430 RFGVHFGTVDGGFGAVFPVNERTFRRLYALQGVVGNALQQSGALNVR--GWRLFQRTTQRGACRSGER--QKGVLDGGLLMRYCQLGYFQQEEIARAIGTTVDMIMDNLLELDCARM 542          
BLAST of mRNA_L-elsbetiae_contig13526.2698.1 vs. uniprot
Match: A0A7S2FC30_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC30_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.460e-22
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   22 GTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRWVGWFLSEVFRWRVLLLSAFHWTKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDID 342
            G+LDG  G I+P DER F+RLYALQGI+ NAL H  A NPR        + +   + ++     ++ +LDG+LLWRFV LD R Q  L  A+GTTV+ V+  +L+ID
Sbjct:   15 GSLDGSAGVIVPTDERPFKRLYALQGILINALPHVAALNPR-----AHRLAKQTPIDIAK---RQKKVLDGALLWRFVSLDLRDQTKLCLALGTTVEAVLRAMLEID 113          
BLAST of mRNA_L-elsbetiae_contig13526.2698.1 vs. uniprot
Match: M4B6I4_HYAAE (CPSF_A domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6I4_HYAAE)

HSP 1 Score: 84.3 bits (207), Expect = 5.420e-18
Identity = 50/117 (42.74%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    7 YCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRWVGWFLSEVFR--WRVLLLSAFHWTKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDIDLAS 351
            Y  + GT +GG+GA++PV ER FRRL+ LQ +M N L  N A NPR      +   R   R    S   W K++ LD  +L+RF+ LD   Q +L R IGTT + V+ NLL+I  A+
Sbjct:   63 YVNIMGTSEGGVGALIPVSERAFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNTQRRCGRPDAWSKKKW-KKSFLDAFVLFRFLALDYVAQKELARCIGTTPEDVIHNLLEIQHAT 178          
BLAST of mRNA_L-elsbetiae_contig13526.2698.1 vs. uniprot
Match: UPI000CD7DEF7 (cleavage and polyadenylation specificity factor subunit 1 isoform X3 n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=UPI000CD7DEF7)

HSP 1 Score: 87.0 bits (214), Expect = 1.670e-17
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 1
Query:    4 RYCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRWVGWFLSEVFRWRVLLLSAFHWTKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDID 342
            R+  +  TLDGGLG +LPV E+ +RRL  LQ ++ N + H G  NP+   WF    ++    LLS      + ++DG L+W F+GL    + ++ + IGT VD +  +L DI+
Sbjct: 1041 RHITMFATLDGGLGYVLPVPEKTYRRLLMLQNVLVNHIAHTGGLNPKAFRWF-HRTYKSATKLLSN---PARGIIDGELVWLFLGLPTSEKQEVAKKIGTKVDEIADDLADIE 1149          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13526.2698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W9_ECTSI4.350e-5781.67CPSF_A domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835Z873_9STRA9.120e-2648.67Cleavage/polyadenylation specificity factor, A sub... [more]
A0A7S2D6V7_9STRA1.820e-2551.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2D575_9STRA5.470e-2451.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K8YVP3_NANGC8.200e-2346.85Cleavage and polyadenylation specificity factor su... [more]
A0A4D9CM95_9STRA2.370e-2246.85Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1BI36_9STRA4.950e-2247.01Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2FC30_9STRA5.460e-2246.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
M4B6I4_HYAAE5.420e-1842.74CPSF_A domain-containing protein n=1 Tax=Hyalopero... [more]
UPI000CD7DEF71.670e-1737.17cleavage and polyadenylation specificity factor su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13526contigL-elsbetiae_contig13526:1956..2835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.0
Seed ortholog evalue2.6e-45
Seed eggNOG ortholog2880.D7G8W9
KEGG koko:K14401
KEGG Pathwayko03015,map03015
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG5161@1,KOG1896@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Exons2
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.601343-CDS-L-elsbetiae_contig13526:1955..21651622815521.601343-CDS-L-elsbetiae_contig13526:1955..2165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13526 1956..2165 +
1691682938.7246044-CDS-L-elsbetiae_contig13526:1955..21651691682938.7246044-CDS-L-elsbetiae_contig13526:1955..2165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13526 1956..2165 +
1622815521.6132932-CDS-L-elsbetiae_contig13526:2685..28351622815521.6132932-CDS-L-elsbetiae_contig13526:2685..2835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13526 2686..2835 +
1691682938.734468-CDS-L-elsbetiae_contig13526:2685..28351691682938.734468-CDS-L-elsbetiae_contig13526:2685..2835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13526 2686..2835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13526.2698.1prot_L-elsbetiae_contig13526.2698.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13526 1956..2835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13526.2698.1

>prot_L-elsbetiae_contig13526.2698.1 ID=prot_L-elsbetiae_contig13526.2698.1|Name=mRNA_L-elsbetiae_contig13526.2698.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
ARYCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRWV
GWFLSEVFRWRVLLLSAFHWTKQNMLDGSLLWRFVGLDARTQHDLTRAIG
TTVDRVMANLLDIDLASLF*
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mRNA from alignment at L-elsbetiae_contig13526:1956..2835+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13526.2698.1 ID=mRNA_L-elsbetiae_contig13526.2698.1|Name=mRNA_L-elsbetiae_contig13526.2698.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=880bp|location=Sequence derived from alignment at L-elsbetiae_contig13526:1956..2835+ (Laminarionema elsbetiae ELsaHSoW15)
GCACGGTACTGCCTCCTCGCCGGGACCCTGGACGGGGGTCTGGGGGCAAT CCTCCCCGTGGATGAACGCGTGTTCCGGAGGCTCTACGCGCTGCAGGGCA TCATGAGCAACGCGCTCGGCCATAACGGCGCAGCAAACCCGAGGTGGGTC GGTTGGTTTCTCTCTGAAGTATTTAGATGGCGGGTTCTGCTATTGTCGGC CTTTCACTGGGTCGGGGGTGTTTTTTACTTGGTTGCTGTGCTTCTTGTTC GTTGCCGAACAGTTCTGCCTGCTACGCCATGAGCCTCGGGTTGGCCAAGT ACCGCAGCAGACGAAGGAAGCAGCAGAGCTGACGCTTATCAGCCGGTGAC ATCGATTGGAATTTATGCGTTGGTTGGGCCCCTGCGGCGCACTCCTGGTG TTTTAGATTCCCGGGCCGAGCTTCTCAACAGCGCTCCCGCTTACCAAGTG CTCCAAAGAGGCAGCTGTAGCAGGGCTGCTGGACGTAGTAGCGTATTTCC CCCCCCCGCCCCCTACTCCCCCCCCCGGGGCGCATCTTGGTGCCCGCTCT TCGGAGATGCGACACCCTGCGGCCCGCCAACAAACTGCAGTGCATGATAT TTTGTAACTCTCTATACATATGTGCGTGCGAACCAACCAACCGGTACCGT CTGGCGAACCGGAACTTCATGATGGGGTGATGGGCAGGGCGTACCGGCTG TTCGACCACGGCCCGACCTTCCGGTACGAGACGAAGCAGAACATGCTGGA CGGGAGCCTGTTGTGGCGGTTCGTGGGGCTCGACGCCCGCACCCAGCACG ACCTAACGAGAGCCATCGGAACCACAGTGGACCGTGTGATGGCCAACCTG CTGGACATCGACCTTGCGTCTCTGTTCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13526:1956..2835+

>mRNA_L-elsbetiae_contig13526.2698.1 ID=mRNA_L-elsbetiae_contig13526.2698.1|Name=mRNA_L-elsbetiae_contig13526.2698.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig13526:1956..2835+ (Laminarionema elsbetiae ELsaHSoW15)
GCACGGTACTGCCTCCTCGCCGGGACCCTGGACGGGGGTCTGGGGGCAAT
CCTCCCCGTGGATGAACGCGTGTTCCGGAGGCTCTACGCGCTGCAGGGCA
TCATGAGCAACGCGCTCGGCCATAACGGCGCAGCAAACCCGAGGTGGGTC
GGTTGGTTTCTCTCTGAAGTATTTAGATGGCGGGTTCTGCTATTGTCGGC
CTTTCACTGGGCACGGTACTGCCTCCTCGCCGGGACCCTGGACGGGGGTC
TGGGGGCAATCCTCCCCGTGGATGAACGCGTGTTCCGGAGGCTCTACGCG
CTGCAGGGCATCATGAGCAACGCGCTCGGCCATAACGGCGCAGCAAACCC
GAGGTGGGTCGGTTGGTTTCTCTCTGAAGTATTTAGATGGCGGGTTCTGC
TATTGTCGGCCTTTCACTGGACGAAGCAGAACATGCTGGACGGGAGCCTG
TTGTGGCGGTTCGTGGGGCTCGACGCCCGCACCCAGCACGACCTAACGAG
AGCCATCGGAACCACAGTGGACCGTGTGATGGCCAACCTGCTGGACATCG
ACCTTGCGTCTCTGTTCTAGACGAAGCAGAACATGCTGGACGGGAGCCTG
TTGTGGCGGTTCGTGGGGCTCGACGCCCGCACCCAGCACGACCTAACGAG
AGCCATCGGAACCACAGTGGACCGTGTGATGGCCAACCTGCTGGACATCG
ACCTTGCGTCTCTGTTCTAG
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