mRNA_L-elsbetiae_contig1351.2690.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1351.2690.1
Unique NamemRNA_L-elsbetiae_contig1351.2690.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: D8LHK5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK5_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.560e-15
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:   37 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 129
            DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR
Sbjct:   31 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 61
[Close]
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: A0A8J7TBA4_ATRSP (RPAB4 protein (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7TBA4_ATRSP)

HSP 1 Score: 61.6 bits (148), Expect = 1.370e-11
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    7 LFVHASRAGADCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 132
            LF       ++C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:    3 LFFFFPYVISECHTENEIKARDPIRCRECGYRIMYKKRTKRC 44
[Close]
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: R0L3R7_ANAPL (DNA-directed RNA polymerases I, II, and III subunit RPABC4 (Fragment) n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=R0L3R7_ANAPL)

HSP 1 Score: 60.8 bits (146), Expect = 1.710e-11
Identity = 24/33 (72.73%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:   34 ADCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 132
            ++C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:    3 SECHTENEIKARDPIRCRECGYRIMYKKRTKRC 35
[Close]
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: A0A8C5SZC9_LATLA (RNA polymerase II, I and III subunit K n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5SZC9_LATLA)

HSP 1 Score: 61.6 bits (148), Expect = 2.350e-11
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:   37 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 132
            DC  +N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 DCHKENEIKARDPIRCRECGYRIMYKKRTKRC 52
[Close]
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: A0A166GIH0_9AGAM (Uncharacterized protein n=2 Tax=unclassified Peniophora TaxID=2635284 RepID=A0A166GIH0_9AGAM)

HSP 1 Score: 61.2 bits (147), Expect = 2.480e-11
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 PPLFVHASRAGADCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 129
            PP+        ADCG++N IKA++PI+C++CG+RIMYKKRTKR
Sbjct:   22 PPIRQEMQYLCADCGAENEIKAREPIRCKECGHRIMYKKRTKR 64
[Close]
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: UPI001B87FE28 (DNA-directed RNA polymerase I n=2 Tax=Suillus TaxID=5379 RepID=UPI001B87FE28)

HSP 1 Score: 61.2 bits (147), Expect = 2.550e-11
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   10 FVHASRAG-----ADCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 129
            FVHA R       ADCG+ N IK+++PI+CR+CG+RIMYKKRTKR
Sbjct:   16 FVHAPRQDMEYICADCGAKNEIKSREPIRCRECGHRIMYKKRTKR 60
[Close]
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: A0A7R9QPU4_9ACAR (Hypothetical protein n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9QPU4_9ACAR)

HSP 1 Score: 62.0 bits (149), Expect = 2.760e-11
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   34 ADCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 132
            A+C  DN IK KDPI+CR+CGYRIMYKKRTKRC
Sbjct:   66 AECHHDNEIKPKDPIRCRECGYRIMYKKRTKRC 98
[Close]
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: A0A197K819_9FUNG (DNA-directed RNA polymerase I n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K819_9FUNG)

HSP 1 Score: 60.8 bits (146), Expect = 2.770e-11
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:   34 ADCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 129
            A+CGSDN IK K+PI+C++CGYRIMYKKRTKR
Sbjct:   23 AECGSDNEIKPKEPIRCKECGYRIMYKKRTKR 54
[Close]
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: E2BHJ3_HARSA (DNA-directed RNA polymerases I, II, and III subunit RPABC4 (Fragment) n=2 Tax=Formicidae TaxID=36668 RepID=E2BHJ3_HARSA)

HSP 1 Score: 60.1 bits (144), Expect = 3.390e-11
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:   37 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 132
            +C +DN I+ KDPI+CR+CGYRIMYKKRTKRC
Sbjct:    3 ECHNDNEIRQKDPIRCRECGYRIMYKKRTKRC 34
[Close]
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: A0A7K9HX18_9AVES (RPAB4 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7K9HX18_9AVES)

HSP 1 Score: 60.5 bits (145), Expect = 3.580e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:   37 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 132
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 52
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHK5_ECTSI3.560e-15100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J7TBA4_ATRSP1.370e-1161.90RPAB4 protein (Fragment) n=1 Tax=Atractosteus spat... [more]
R0L3R7_ANAPL1.710e-1172.73DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A8C5SZC9_LATLA2.350e-1178.13RNA polymerase II, I and III subunit K n=1 Tax=Lat... [more]
A0A166GIH0_9AGAM2.480e-1158.14Uncharacterized protein n=2 Tax=unclassified Penio... [more]
UPI001B87FE282.550e-1162.22DNA-directed RNA polymerase I n=2 Tax=Suillus TaxI... [more]
A0A7R9QPU4_9ACAR2.760e-1178.79Hypothetical protein n=1 Tax=Oppiella nova TaxID=3... [more]
A0A197K819_9FUNG2.770e-1178.13DNA-directed RNA polymerase I n=1 Tax=Linnemannia ... [more]
E2BHJ3_HARSA3.390e-1175.00DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7K9HX18_9AVES3.580e-1175.00RPAB4 protein (Fragment) n=3 Tax=Neognathae TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1351contigL-elsbetiae_contig1351:22029..22166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue2.4e-10
Seed eggNOG ortholog2880.D8LHK5
Preferred namePOLR2K
KEGG rclassRC02795
KEGG koko:K03009,ko:K09122
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000418,GO:0000419,GO:0000428,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006383,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009304,GO:0009452,GO:0009653,GO:0009719,GO:0009826,GO:0009856,GO:0009860,GO:0009889,GO:0009893,GO:0009932,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0016043,GO:0016049,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0023052,GO:0030154,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032989,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040007,GO:0040029,GO:0042221,GO:0042795,GO:0042797,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044706,GO:0045815,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048518,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051704,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060560,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.Psort location Cytoplasmic, score
EggNOG OGsCOG1996@1,KOG3507@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.716793-CDS-L-elsbetiae_contig1351:22028..221661622815520.716793-CDS-L-elsbetiae_contig1351:22028..22166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1351 22029..22166 +
1691682938.3438618-CDS-L-elsbetiae_contig1351:22028..221661691682938.3438618-CDS-L-elsbetiae_contig1351:22028..22166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1351 22029..22166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1351.2690.1prot_L-elsbetiae_contig1351.2690.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1351 22029..22166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1351.2690.1

>prot_L-elsbetiae_contig1351.2690.1 ID=prot_L-elsbetiae_contig1351.2690.1|Name=mRNA_L-elsbetiae_contig1351.2690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=46bp
PPLFVHASRAGADCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRCE*
back to top

mRNA from alignment at L-elsbetiae_contig1351:22029..22166+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1351.2690.1 ID=mRNA_L-elsbetiae_contig1351.2690.1|Name=mRNA_L-elsbetiae_contig1351.2690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=138bp|location=Sequence derived from alignment at L-elsbetiae_contig1351:22029..22166+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCTCTCTTCGTGCACGCATCACGTGCCGGCGCAGACTGTGGCTCGGA
CAACCTGATCAAGGCGAAGGACCCCATCCAGTGCCGTCAATGCGGGTACC
GCATCATGTACAAGAAGCGCACCAAGCGATGTGAGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1351:22029..22166+

>mRNA_L-elsbetiae_contig1351.2690.1 ID=mRNA_L-elsbetiae_contig1351.2690.1|Name=mRNA_L-elsbetiae_contig1351.2690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=276bp|location=Sequence derived from alignment at L-elsbetiae_contig1351:22029..22166+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCTCTCTTCGTGCACGCATCACGTGCCGGCGCAGACTGTGGCTCGGA
CAACCTGATCAAGGCGAAGGACCCCATCCAGTGCCGTCAATGCGGGTACC
GCATCATGTACAAGAAGCGCACCAAGCGATGTGAGTGACCCCCTCTCTTC
GTGCACGCATCACGTGCCGGCGCAGACTGTGGCTCGGACAACCTGATCAA
GGCGAAGGACCCCATCCAGTGCCGTCAATGCGGGTACCGCATCATGTACA
AGAAGCGCACCAAGCGATGTGAGTGA
back to top