mRNA_L-elsbetiae_contig13507.2688.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13507.2688.1
Unique NamemRNA_L-elsbetiae_contig13507.2688.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13507.2688.1 vs. uniprot
Match: A0A6H5KIH1_9PHAE (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIH1_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 4.070e-46
Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 1 
Query:    1 TAGKGRRTIRPVTDPTEALITAEPEMLSCRITPEDEFILLACDGLFDVFTSDEVVKIVRKELCRHGDTQRVCETLTRKAIDERYTQDNVSVVLVVLKKFW 300
            TAG  R   +PVTDPT ALITAEPEMLSCRITPEDEF+LLACDGLFDVFTSDEVV+IVRKEL  HGDTQRVCETL R+AI+ERYTQDNVSVVLVVL KFW
Sbjct: 1152 TAGVSRA--KPVTDPTGALITAEPEMLSCRITPEDEFVLLACDGLFDVFTSDEVVRIVRKELRMHGDTQRVCETLVRRAINERYTQDNVSVVLVVLNKFW 1249
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BLAST of mRNA_L-elsbetiae_contig13507.2688.1 vs. uniprot
Match: A0A7S2V0C4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0C4_9STRA)

HSP 1 Score: 105 bits (261), Expect = 8.260e-27
Identity = 46/86 (53.49%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:   43 PTEALITAEPEMLSCRITPEDEFILLACDGLFDVFTSDEVVKIVRKELCRHGDTQRVCETLTRKAIDERYTQDNVSVVLVVLKKFW 300
            P + L+TAEPE+L   +TPEDEF+LLACDGLFDV  ++EV+ +++ E+ +HGD QR  E L+  AI +R T+DNV++VLV+L ++W
Sbjct:   59 PEKPLVTAEPEILISELTPEDEFVLLACDGLFDVLGNEEVIDLIKTEMKQHGDAQRAVEMLSHVAIHKRRTRDNVTIVLVILNRWW 144
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BLAST of mRNA_L-elsbetiae_contig13507.2688.1 vs. uniprot
Match: A0A6H5L355_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L355_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.890e-26
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   55 LITAEPEMLSCRITPEDEFILLACDGLFDVFTSDEVVKIVRKELCRHGDTQRVCETLTRKAIDERYTQDNVSVVLVVLKKFW 300
            LITAEPE L   ITP+DEF++LACDG+FDV TS+EVV  V +++  H D QR CE LT KAI ER T+DNVS+VL+V  K++
Sbjct:   11 LITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQRCCEDLTEKAIVERRTRDNVSLVLLVFNKWF 92
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BLAST of mRNA_L-elsbetiae_contig13507.2688.1 vs. uniprot
Match: A0A7S1XX31_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX31_9STRA)

HSP 1 Score: 107 bits (266), Expect = 8.120e-25
Identity = 50/88 (56.82%), Postives = 71/88 (80.68%), Query Frame = 1 
Query:   40 DPTEALITAEPEMLSCRITPEDEFILLACDGLFDVFTSDEVVKIVRKELCRHGDTQRVCETLTRKAIDERYTQDNVSVVLVVLK-KFW 300
            D +  ++TAEPE+ S ++ PEDEFI+LACDGLFDVFT++EVV+ VR E+ +H D Q+  E+L+R+AI ER  +DNV++VL++LK KFW
Sbjct:  664 DYSRPILTAEPEIQSLKLAPEDEFIVLACDGLFDVFTNEEVVQAVRAEMAQHQDAQQCVESLSRRAIHERNCRDNVTIVLIILKPKFW 751
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BLAST of mRNA_L-elsbetiae_contig13507.2688.1 vs. uniprot
Match: A0A7S4DCC2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCC2_HETAK)

HSP 1 Score: 95.9 bits (237), Expect = 2.830e-22
Identity = 45/82 (54.88%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   55 LITAEPEMLSCRITPEDEFILLACDGLFDVFTSDEVVKIVRKELCRHGDTQRVCETLTRKAIDERYTQDNVSVVLVVLKKFW 300
            LIT EPE+L   +TPED FILLACDGLFDVF ++E V +V +E+  H +  R CE L+R+A+ ER ++DN++VVL+VL ++W
Sbjct:  151 LITCEPEILEYDLTPEDHFILLACDGLFDVFENEEAVALVLQEMAGHRNAHRACEALSRRAL-ERGSRDNITVVLLVLNEWW 231
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BLAST of mRNA_L-elsbetiae_contig13507.2688.1 vs. uniprot
Match: A0A7S2FV88_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV88_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.590e-22
Identity = 49/101 (48.51%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 TAGKGRRTIR-PVTDPTEALITAEPEMLSCRITPEDEFILLACDGLFDVFTSDEVVKIVRKELCRHGDTQRVCETLTRKAIDERYTQDNVSVVLVVLKKFW 300
            TAG G R    P TD ++ LI AEPE+ +  + P D+F+LLACDGLFDV T+ E   ++  E+ RHGD QR  E L+R AID+  ++DNVS+++V+L++ W
Sbjct:  418 TAGSGGRADNNPDTDLSKPLIIAEPEVQAVTLIPADDFLLLACDGLFDVLTNQEACDLILAEMARHGDVQRAAEALSRNAIDDCGSRDNVSILIVLLRQPW 518
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BLAST of mRNA_L-elsbetiae_contig13507.2688.1 vs. uniprot
Match: A0A836CBM8_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBM8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.020e-19
Identity = 40/79 (50.63%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   55 LITAEPEMLSCRITPEDEFILLACDGLFDVFTSDEVVKIVRKELCRHGDTQRVCETLTRKAIDERYTQDNVSVVLVVLK 291
            L+ +EPE    ++TP ++F++LACDGLFDVF++ EVV+ V  E+  HGD Q+ CE++T +AI ER+T+DNV+++LV+L+
Sbjct:  503 LVISEPEFTVVQLTPAEDFMVLACDGLFDVFSNVEVVQAVCAEMAVHGDAQKCCESITLRAIRERHTRDNVTMILVMLR 581
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BLAST of mRNA_L-elsbetiae_contig13507.2688.1 vs. uniprot
Match: W7U755_9STRA (Protein phosphatase 1b2 53 kDa isoform n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U755_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 7.230e-19
Identity = 39/89 (43.82%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:   34 VTDPTEALITAEPEMLSCRITPEDEFILLACDGLFDVFTSDEVVKIVRKELCRHGDTQRVCETLTRKAIDERYTQDNVSVVLVVLKKFW 300
            V D ++ L+ A PE+L   ++  D+F+LLACDGLFDVF + EV++ + +++ +H D QR CE ++  AI +R   DNVS+VL+V   +W
Sbjct:  915 VKDYSQPLVIARPEILITELSERDDFVLLACDGLFDVFPNSEVIRFILEDMKQHHDAQRACENISYTAIHQRIAHDNVSIVLLVTNNWW 1003
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BLAST of mRNA_L-elsbetiae_contig13507.2688.1 vs. uniprot
Match: A0A7S0XEJ1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEJ1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.300e-18
Identity = 38/84 (45.24%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:   49 EALITAEPEMLSCRITPEDEFILLACDGLFDVFTSDEVVKIVRKELCRHGDTQRVCETLTRKAIDERYTQDNVSVVLVVLKKFW 300
            + LI A+P++ +  I+  D+F+LLACDGLFDVFT +++V  V+  +  H D+QR C+ LT +AI +R ++DNVSV+L++L  ++
Sbjct:  532 QPLIVADPDIQATNISENDQFLLLACDGLFDVFTPEDIVTFVKSNMEEHHDSQRCCQNLTYEAIRKRNSRDNVSVILIILNPWY 615
[Close]
BLAST of mRNA_L-elsbetiae_contig13507.2688.1 vs. uniprot
Match: A0A7S1FM49_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FM49_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 6.230e-18
Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:   46 TEALITAEPEMLSCRITPEDEFILLACDGLFDVFTSDEVVKIVRKEL-CRHGDTQRVCETLTRKAIDERYTQDNVSVVLVVLKKFW 300
            T  L+TAEPE+ S  ++  DEF+LLACDGLFDVF S + V +VR+EL  R G+   V   L+ +AI  R ++DNVS++++VL+ FW
Sbjct:  602 TAPLVTAEPEIASLVLSHNDEFLLLACDGLFDVFRSQDAVALVRQELIARRGEPAEVARILSDQAIHVRRSRDNVSILIIVLRPFW 687
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13507.2688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIH1_9PHAE4.070e-4685.00PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S2V0C4_9STRA8.260e-2753.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5L355_9PHAE8.890e-2660.98PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S1XX31_9STRA8.120e-2556.82Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S4DCC2_HETAK2.830e-2254.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2FV88_9STRA4.590e-2248.51Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836CBM8_9STRA2.020e-1950.63Phosphatase 2C-like domain-containing protein n=1 ... [more]
W7U755_9STRA7.230e-1943.82Protein phosphatase 1b2 53 kDa isoform n=2 Tax=Mon... [more]
A0A7S0XEJ1_9STRA3.300e-1845.24Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S1FM49_9STRA6.230e-1850.00Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13507contigL-elsbetiae_contig13507:2509..4606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue2.9e-29
Seed eggNOG ortholog2880.D7G1B3
KEGG koko:K01090
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size310
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13507.2688.1prot_L-elsbetiae_contig13507.2688.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13507 2584..4599 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.5671175-UTR-L-elsbetiae_contig13507:2508..25831622815520.5671175-UTR-L-elsbetiae_contig13507:2508..2583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13507 2509..2583 +
1691682938.265423-UTR-L-elsbetiae_contig13507:2508..25831691682938.265423-UTR-L-elsbetiae_contig13507:2508..2583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13507 2509..2583 +
1622815520.605249-UTR-L-elsbetiae_contig13507:4599..46061622815520.605249-UTR-L-elsbetiae_contig13507:4599..4606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13507 4600..4606 +
1691682938.2971222-UTR-L-elsbetiae_contig13507:4599..46061691682938.2971222-UTR-L-elsbetiae_contig13507:4599..4606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13507 4600..4606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.580478-CDS-L-elsbetiae_contig13507:2583..26671622815520.580478-CDS-L-elsbetiae_contig13507:2583..2667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13507 2584..2667 +
1691682938.2773018-CDS-L-elsbetiae_contig13507:2583..26671691682938.2773018-CDS-L-elsbetiae_contig13507:2583..2667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13507 2584..2667 +
1622815520.5935419-CDS-L-elsbetiae_contig13507:4455..45991622815520.5935419-CDS-L-elsbetiae_contig13507:4455..4599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13507 4456..4599 +
1691682938.2862625-CDS-L-elsbetiae_contig13507:4455..45991691682938.2862625-CDS-L-elsbetiae_contig13507:4455..4599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13507 4456..4599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13507.2688.1

>prot_L-elsbetiae_contig13507.2688.1 ID=prot_L-elsbetiae_contig13507.2688.1|Name=mRNA_L-elsbetiae_contig13507.2688.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
MLSCRITPEDEFILLACDGLFDVFTSDEVVKIVRKELCRHGDTQRVCETL
TRKAIDERYTQDNVSVVLVVLKKFW*
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mRNA from alignment at L-elsbetiae_contig13507:2509..4606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13507.2688.1 ID=mRNA_L-elsbetiae_contig13507.2688.1|Name=mRNA_L-elsbetiae_contig13507.2688.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2098bp|location=Sequence derived from alignment at L-elsbetiae_contig13507:2509..4606+ (Laminarionema elsbetiae ELsaHSoW15)
ACTGCGGGAAAGGGGAGGAGGACCATCAGGCCCGTGACTGACCCCACGGA
GGCGCTCATCACGGCGGAGCCGGAGATGTTGTCGTGCCGGATCACCCCGG
AGGACGAGTTCATTCTGCTGGCGTGCGACGGGCTGTTCGACGTTTTCACC
AGCGACGAGGTGAGTTTTTTTCATTTTTTTTTTTTTCGACATCAAAAATC
GCCTGCTGGGGTATGCAGCCCCCCAGCCTCGTCTGAGTATCTACAGTACC
CTTCCTTAGCTTGATGCAGGAGCAGACGAGGGTGTGGGTGGGGTGATTGG
AGGAACAGAGAGAGGAGAGAGATCTGGGAGCGTCTTTTTGGTGCATATGC
CAAGACACAGCAGACAGGCGCTCTCTCGCTAGGAGTGTCCTGCGAAGGTG
TTGTGTACGTCAATTTCCAGGAACGAGTGATTTGGTGCAAATGAGAAGCA
CACACACACATGATACTCGTGCCGGGTCGCGAGGTCTCATGATGACTACA
ACAACACCCACCCGTTGTGCAAAAAATCAGCAAGTAGGAGTACAAAATAA
AACAAAAATATCTGCTGCAGGAGAAGGCTAGGTGCCGCGGTGACAGCCCC
CCCCCCCTATATCGTGAGAGCCAAAAAAAGCCAGCGGCGTGGGACGGCAG
GGGTTTGCTCGACGCGACAGAAGAGACCCGCGAAGAGAGTAAGGCGGGGA
GGAATGATTGTTGTAGGCACGATACGTAACCCCTCCTTGACCGGCCTAGA
CCACAGGCAGTGAGTGGTACAAATCCGCAATCCGCTCGGTTTCTGGTTTG
TTTAATATTCAGTTCTATTTATTTCGTTGTGGGTCGAACGATCCGTTGGA
GAAATGTAGACCTATCGTACGGGTGGAAAACGGCAGAGGTTTACAGAAGT
GGAGCGTGCGTGCGTGCACTGCAACTAACTCCCTTTCAGCCCTTTTATGT
TTTAGTTATGGATCGCAGGTCGTCAAATATGTGTTAAGTTTGTGCTCCTA
TTTATGTATATTTTTGCTGAAGCCCGTATCCACCTACCCCCACGACCCAA
TCAGCCGGTGTGTTGATTTTCCGAGAAGTGCGTTACTCTCTCATTTGAAG
GCAGCCCACCTCCACGACCCAATCAGCCGGTGTATAATTTAAGGTTGCAA
TCAACTGAATTCATTCATTCCCCCAAAGTAGTCTGCCCTAGATCTCACGT
GAAGAGTGGCACACTCTCCTTTTGCCACCCATCCTTCGCCTCTAAAACAG
CAGCAATATATGACTACTACATACGTCTTCCTCTTCCTCCTCTCGGCTCC
TTGTACCTGCGTATGGAGCTAAAGCCTGGCGGCGAGCAGATTTTTGTTTT
TAAAATAAAACAAAGAATCAAAGATGGAACCTAACCCATACTAGAGCAAA
GACTCGATATGGGGTTCAAACGGTATTCCATACAGAGACGTAATATTTGG
CGAAGCGAGCAGAATTTTTTTTTTTTGTGTCGGGCGAGAGTGCCAGGCGG
TACGTGTGTGCGTACATACATGCGAGCCATCCACCGCACAGGGGGAGGGG
TGCGGTAAATATTGTATTTATTTTTAGACTTTCCCGAGGGGACACCTCGA
CGACACGGGGAGGGTGCCAGTGTCGAAGAGGCACGTCGTAGAATACGGGA
AATCTTGCCGTAGTAAATATCTCAGAAAAATCCGTATTTAGAAAAAAAAA
AATGCTTGTCGAGATCGGCTAGCTATTTAGCCCCCCTCCCGTTGTCGAAC
TACATATGCATCGGCTCGGGGAAAACTACATACCGCGCACGCACCCCTGT
GTGGTGACTCGCGCGAGTTACGGTACATGCGTTTTAGCTCTATCCCACCC
CACGCAATCTACACCCACTGACGCGCGAGCTTGGCCGTGTGCGTGTGTGT
GTGTATTGCGCCGCGTTTTTTTTTTTCGGTGGGGTGGGTGACGGCAGGTG
GTGAAGATTGTGCGGAAAGAGCTCTGCCGGCACGGCGACACCCAGCGCGT
GTGCGAGACGCTGACGCGCAAGGCTATCGACGAGCGCTACACCCAGGACA
ACGTCTCCGTTGTCTTGGTGGTCTTGAAGAAGTTTTGGTAAAAGACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13507:2509..4606+

>mRNA_L-elsbetiae_contig13507.2688.1 ID=mRNA_L-elsbetiae_contig13507.2688.1|Name=mRNA_L-elsbetiae_contig13507.2688.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig13507:2509..4606+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGTCGTGCCGGATCACCCCGGAGGACGAGTTCATTCTGCTGGCGTG
CGACGGGCTGTTCGACGTTTTCACCAGCGACGAGATGTTGTCGTGCCGGA
TCACCCCGGAGGACGAGTTCATTCTGCTGGCGTGCGACGGGCTGTTCGAC
GTTTTCACCAGCGACGAGGTGGTGAAGATTGTGCGGAAAGAGCTCTGCCG
GCACGGCGACACCCAGCGCGTGTGCGAGACGCTGACGCGCAAGGCTATCG
ACGAGCGCTACACCCAGGACAACGTCTCCGTTGTCTTGGTGGTCTTGAAG
AAGTTTTGGTAAGTGGTGAAGATTGTGCGGAAAGAGCTCTGCCGGCACGG
CGACACCCAGCGCGTGTGCGAGACGCTGACGCGCAAGGCTATCGACGAGC
GCTACACCCAGGACAACGTCTCCGTTGTCTTGGTGGTCTTGAAGAAGTTT
TGGTAA
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