mRNA_L-elsbetiae_contig135.2682.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig135.2682.1 vs. uniprot
Match: D7FHF7_ECTSI (40S ribosomal protein S12 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF7_ECTSI) HSP 1 Score: 261 bits (666), Expect = 8.710e-85 Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 2 Query: 50 VAETAAAEVEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEATKIVPCSCAVVTDYGEQTQALSVLLEHLKKGGD 454 V ET + EVEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDC+NPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEATKIVPCSCAVVTDYGEQTQAL VLLEHLKKGGD Sbjct: 7 VEETGSPEVEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCDNPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEATKIVPCSCAVVTDYGEQTQALGVLLEHLKKGGD 141
BLAST of mRNA_L-elsbetiae_contig135.2682.1 vs. uniprot
Match: A0A835YYB7_9STRA (40S ribosomal protein S12 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYB7_9STRA) HSP 1 Score: 223 bits (568), Expect = 6.890e-70 Identity = 110/145 (75.86%), Postives = 127/145 (87.59%), Query Frame = 2 Query: 35 MNGEVVAETAAAEV-----EVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEATKIVPCSCAVVTDYGEQTQALSVLLEHLKKGGD 454 M+ E VAE AA +V E+SV DALKEVLKKALIFDGLRRGLHEC KALDRG+ARLCCLAKDCENPEYT+LVRALC+EG VH+IMV+TRQ+LGQWAGLCKI AEGEATK+VPCSCAVVTD+G ++ AL+VL+EHL+KGG+ Sbjct: 1 MSSEDVAEAPAAAAPAPAADVAELSVPDALKEVLKKALIFDGLRRGLHECVKALDRGTARLCCLAKDCENPEYTRLVRALCEEGGVHIIMVNTRQQLGQWAGLCKIDAEGEATKVVPCSCAVVTDFGTESPALTVLMEHLRKGGE 145
BLAST of mRNA_L-elsbetiae_contig135.2682.1 vs. uniprot
Match: A0A7S2CVX4_9STRA (40S ribosomal protein S12 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVX4_9STRA) HSP 1 Score: 199 bits (506), Expect = 1.640e-60 Identity = 99/143 (69.23%), Postives = 120/143 (83.92%), Query Frame = 2 Query: 14 MVAEDVEMNGEVVAETAAAEVEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEATKIVPCSCAVVTDYGEQTQALSVLLEHLK 442 M ED M AET EVEV+E+ VLDALKEVLKKAL+ DGL RGLHECAKALD+ +A+LCCLAKDC+NPEYT+LVRALC+EG V+L+MVDT ++LG+W GLCKI EGEATK+V CSCAV+T++GE++QAL+VLLE LK Sbjct: 1 MAEEDAVMETAEAAETE--EVEVEEMGVLDALKEVLKKALVHDGLSRGLHECAKALDKHTAKLCCLAKDCDNPEYTKLVRALCEEGGVNLVMVDTGKQLGEWCGLCKIDEEGEATKVVRCSCAVITEFGEESQALNVLLEFLK 141
BLAST of mRNA_L-elsbetiae_contig135.2682.1 vs. uniprot
Match: A0A7S2CD91_9STRA (40S ribosomal protein S12 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CD91_9STRA) HSP 1 Score: 192 bits (487), Expect = 1.090e-57 Identity = 96/136 (70.59%), Postives = 115/136 (84.56%), Query Frame = 2 Query: 44 EVVAETAAAE--VEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEATKIVPCSCAVVTDYGEQTQALSVLLEHLKK 445 EV+ E AA E VEV+E+ VLDALKEVLKKAL+ DGLRRGLHE KALDR SA+LCCLAKDC+NPEY +LVRALC+EG V+L+MV+T + LG+W GLCKI GEA K+V CSCAVVT++GE+TQAL++LLE LKK Sbjct: 5 EVMDEVAAEEPEVEVEEMGVLDALKEVLKKALVHDGLRRGLHEGVKALDRHSAKLCCLAKDCDNPEYNKLVRALCEEGGVNLVMVETGKTLGEWCGLCKIDENGEAVKVVRCSCAVVTEFGEETQALNILLEFLKK 140
BLAST of mRNA_L-elsbetiae_contig135.2682.1 vs. uniprot
Match: A0A7S2LXQ0_9STRA (40S ribosomal protein S12 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LXQ0_9STRA) HSP 1 Score: 182 bits (461), Expect = 3.080e-53 Identity = 90/137 (65.69%), Postives = 110/137 (80.29%), Query Frame = 2 Query: 44 EVVAETAAAEVEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEATKIVPCSCAVVTDYGEQTQALSVLLEHLKKGGD 454 E+V E EV E++VLDALKEVLKKAL+ DGLR+GLHECAKALDR SARLCCLAKDCEN EY +L+RALC EG V +IMVD+ ++LG W GL K+ A+GE K V SCAV+TD+GE+T+ALSVLL++L+K D Sbjct: 43 EIVDAVEEVEEEVAEMNVLDALKEVLKKALVHDGLRKGLHECAKALDRRSARLCCLAKDCENEEYKKLIRALCAEGEVSVIMVDSGKDLGAWCGLAKLDADGEVKKAVRTSCAVITDFGEETRALSVLLDYLQKQAD 179
BLAST of mRNA_L-elsbetiae_contig135.2682.1 vs. uniprot
Match: K0T7T2_THAOC (40S ribosomal protein S12 n=2 Tax=Thalassiosira TaxID=35127 RepID=K0T7T2_THAOC) HSP 1 Score: 180 bits (457), Expect = 3.440e-53 Identity = 87/126 (69.05%), Postives = 106/126 (84.13%), Query Frame = 2 Query: 77 EVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEATKIVPCSCAVVTDYGEQTQALSVLLEHLKKGGD 454 EV E++VLDALKEVLKKALI DGLR+GLHECAKALDR SARLCCLAKDCEN EY +L+RALC EG V +IMVD+ ++LG W GL K+ A+GE K V SCAV+TD+GE+T+AL+VLL++L+K D Sbjct: 16 EVAEMNVLDALKEVLKKALIHDGLRKGLHECAKALDRRSARLCCLAKDCENEEYKKLIRALCAEGEVSVIMVDSGKDLGAWCGLAKLDADGEVKKAVRTSCAVITDFGEETRALTVLLDYLQKQSD 141
BLAST of mRNA_L-elsbetiae_contig135.2682.1 vs. uniprot
Match: A0A7S1BMI5_9STRA (40S ribosomal protein S12 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMI5_9STRA) HSP 1 Score: 176 bits (447), Expect = 9.640e-52 Identity = 86/124 (69.35%), Postives = 105/124 (84.68%), Query Frame = 2 Query: 74 VEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEATKIVPCSCAVVTDYGEQTQALSVLLEHLKK 445 VE E+SVLDALKEVLKKALI DGL++GLHECAKALD+ SARLCCLAKDCEN EY +L+RAL EG+V+LIMVD+ +ELG W GL K+GA+ E K V SCAV+TD+GE+T AL++LL++LKK Sbjct: 11 VETTEMSVLDALKEVLKKALIHDGLKKGLHECAKALDKRSARLCCLAKDCENEEYKKLIRALAAEGDVNLIMVDSGKELGTWCGLAKLGADLEVKKSVRTSCAVITDFGEETHALNILLDYLKK 134
BLAST of mRNA_L-elsbetiae_contig135.2682.1 vs. uniprot
Match: A0A6T5YAX8_9STRA (40S ribosomal protein S12 n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A6T5YAX8_9STRA) HSP 1 Score: 175 bits (443), Expect = 4.810e-51 Identity = 83/131 (63.36%), Postives = 106/131 (80.92%), Query Frame = 2 Query: 62 AAAEVEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEATKIVPCSCAVVTDYGEQTQALSVLLEHLKKGGD 454 A A VE E+SVLDALKEVLKK+++ DGLR+GLHECAKALDR +ARLCCLAKDCEN EY +L+RALC EG VH++MV++ +ELG W GL K+ +G K V SCAV+TD+GE+T+AL++LL+ L+K D Sbjct: 11 APAVVEEVEMSVLDALKEVLKKSMVHDGLRKGLHECAKALDRRAARLCCLAKDCENEEYKKLIRALCAEGEVHVVMVESGKELGAWCGLAKLNDDGSVKKAVRTSCAVITDFGEETRALTILLDFLQKQAD 141
BLAST of mRNA_L-elsbetiae_contig135.2682.1 vs. uniprot
Match: A0A8J2SJQ7_9STRA (40S ribosomal protein S12 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJQ7_9STRA) HSP 1 Score: 174 bits (442), Expect = 7.710e-51 Identity = 86/127 (67.72%), Postives = 104/127 (81.89%), Query Frame = 2 Query: 62 AAAEVEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEATKIVPCSCAVVTDYGEQTQALSVLLEHLK 442 A EVEV E+SVLDAL++VLK+ALI GL+RGL E AKALD +A+LCCLAKDC+N EY+ LVRALCDEG V L+MVD ++LG+WAGLCKI EGEAT +V CS A VT++GE T+ALSVLL +LK Sbjct: 16 AEGEVEVAEMSVLDALRDVLKRALIHGGLKRGLREVAKALDSRTAKLCCLAKDCDNAEYSNLVRALCDEGGVSLVMVDEGKQLGEWAGLCKINEEGEATSVVRCSAACVTEFGEDTRALSVLLTYLK 142
BLAST of mRNA_L-elsbetiae_contig135.2682.1 vs. uniprot
Match: G4ZQP8_PHYSP (40S ribosomal protein S12 n=15 Tax=Eukaryota TaxID=2759 RepID=G4ZQP8_PHYSP) HSP 1 Score: 174 bits (440), Expect = 1.090e-50 Identity = 86/135 (63.70%), Postives = 110/135 (81.48%), Query Frame = 2 Query: 53 AETAAAEVEV-KEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCENPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEATKIVPCSCAVVTDYGEQTQALSVLLEHLKKGGD 454 AE AEVEV KE+ +DALKEVLKKALI DGL+RGLHE AKALD ARLCCLA+DC+ P Y++LVRALC+E V+LI+V + ++LG+W GLCKI + GEA K+V SCAV+TD+GE+T AL+VLL++LK+ G+ Sbjct: 3 AEEVVAEVEVPKELGEMDALKEVLKKALIHDGLKRGLHEAAKALDSRRARLCCLAQDCDEPSYSKLVRALCEEHGVNLILVPSGKQLGEWCGLCKIDSLGEARKVVSTSCAVITDFGEETHALNVLLDYLKRQGE 137 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig135.2682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig135.2682.1 >prot_L-elsbetiae_contig135.2682.1 ID=prot_L-elsbetiae_contig135.2682.1|Name=mRNA_L-elsbetiae_contig135.2682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp MVAEDVEMNGEVVAETAAAEVEVKEISVLDALKEVLKKALIFDGLRRGLHback to top mRNA from alignment at L-elsbetiae_contig135:45623..48539- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig135.2682.1 ID=mRNA_L-elsbetiae_contig135.2682.1|Name=mRNA_L-elsbetiae_contig135.2682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2917bp|location=Sequence derived from alignment at L-elsbetiae_contig135:45623..48539- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig135:45623..48539- >mRNA_L-elsbetiae_contig135.2682.1 ID=mRNA_L-elsbetiae_contig135.2682.1|Name=mRNA_L-elsbetiae_contig135.2682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig135:45623..48539- (Laminarionema elsbetiae ELsaHSoW15)back to top |