mRNA_L-elsbetiae_contig135.2679.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig135.2679.1
Unique NamemRNA_L-elsbetiae_contig135.2679.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig135.2679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig135contigL-elsbetiae_contig135:333..935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815519.3419404-CDS-L-elsbetiae_contig135:332..5241622815519.3419404-CDS-L-elsbetiae_contig135:332..524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig135 333..524 +
1691682937.6192393-CDS-L-elsbetiae_contig135:332..5241691682937.6192393-CDS-L-elsbetiae_contig135:332..524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig135 333..524 +
1622815519.3522782-CDS-L-elsbetiae_contig135:835..9341622815519.3522782-CDS-L-elsbetiae_contig135:835..934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig135 836..934 +
1691682937.6346786-CDS-L-elsbetiae_contig135:835..9341691682937.6346786-CDS-L-elsbetiae_contig135:835..934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig135 836..934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig135.2679.1prot_L-elsbetiae_contig135.2679.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig135 333..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig135.2679.1

>prot_L-elsbetiae_contig135.2679.1 ID=prot_L-elsbetiae_contig135.2679.1|Name=mRNA_L-elsbetiae_contig135.2679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
RAKQTSCDSTHTDQQNDPSLTHASRYVLNCTVLQGENNAFLYDYRAYRKR
EFPITISGYNTFITGHLWLDRQYQPDPLLLASIIVRGDGWPSKLFLF
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mRNA from alignment at L-elsbetiae_contig135:333..935+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig135.2679.1 ID=mRNA_L-elsbetiae_contig135.2679.1|Name=mRNA_L-elsbetiae_contig135.2679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=603bp|location=Sequence derived from alignment at L-elsbetiae_contig135:333..935+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGCCAAGCAGACATCCTGTGACTCTACTCACACCGACCAGCAAAATGA
CCCGTCGCTTACCCATGCGTCACGCTACGTGCTAAATTGTACTGTGCTGC
AGGGAGAAAACAACGCGTTTCTGTATGACTACAGAGCCTACCGCAAGAGG
GAATTTCCCATCACCATCAGCGGATACAACACCTTCATCACGGTATGTAT
ATATGATCAAAATAATCGGTGATTTGAACCTGAACTCACTGCAAAATGTC
GACTCTTAACCCGAAACGAAAAGTATGTTCGTCCGTCAACTGCTGTCACA
TGCTAGGAGCCCCCGGGCGTGCAGCACGATACTTGCTCGGAGTCGTGTAT
TTTTGTGTTCGCACTTTCAGCTGACATGCTGTGAAGCTGATTTTGTGATA
AAAGTGTTTCACGTGAGCTGTTCGTCCCTAGAACAGGACTTTTTTGCCCC
TGTGTCTCCCAAGCATGACCCGTACGCGTCGTCCACCTACCTCGCAAGTG
CAGGGACACCTATGGCTCGACCGCCAGTACCAACCCGACCCACTGTTGCT
TGCGAGCATCATTGTGAGGGGCGACGGCTGGCCGTCGAAGCTGTTCCTCT
TCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig135:333..935+

>mRNA_L-elsbetiae_contig135.2679.1 ID=mRNA_L-elsbetiae_contig135.2679.1|Name=mRNA_L-elsbetiae_contig135.2679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig135:333..935+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGCCAAGCAGACATCCTGTGACTCTACTCACACCGACCAGCAAAATGA
CCCGTCGCTTACCCATGCGTCACGCTACGTGCTAAATTGTACTGTGCTGC
AGGGAGAAAACAACGCGTTTCTGTATGACTACAGAGCCTACCGCAAGAGG
GAATTTCCCATCACCATCAGCGGATACAACACCTTCATCACGAGAGCCAA
GCAGACATCCTGTGACTCTACTCACACCGACCAGCAAAATGACCCGTCGC
TTACCCATGCGTCACGCTACGTGCTAAATTGTACTGTGCTGCAGGGAGAA
AACAACGCGTTTCTGTATGACTACAGAGCCTACCGCAAGAGGGAATTTCC
CATCACCATCAGCGGATACAACACCTTCATCACGGGACACCTATGGCTCG
ACCGCCAGTACCAACCCGACCCACTGTTGCTTGCGAGCATCATTGTGAGG
GGCGACGGCTGGCCGTCGAAGCTGTTCCTCTTCGGACACCTATGGCTCGA
CCGCCAGTACCAACCCGACCCACTGTTGCTTGCGAGCATCATTGTGAGGG
GCGACGGCTGGCCGTCGAAGCTGTTCCTCTTC
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