mRNA_L-elsbetiae_contig13493.2676.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13493.2676.1
Unique NamemRNA_L-elsbetiae_contig13493.2676.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13493.2676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13493contigL-elsbetiae_contig13493:3516..4674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size694
Cds size567
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13493.2676.1prot_L-elsbetiae_contig13493.2676.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13493 3516..4082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815519.1580305-CDS-L-elsbetiae_contig13493:3515..40821622815519.1580305-CDS-L-elsbetiae_contig13493:3515..4082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13493 3516..4082 -
1691682937.545634-CDS-L-elsbetiae_contig13493:3515..40821691682937.545634-CDS-L-elsbetiae_contig13493:3515..4082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13493 3516..4082 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815519.1769915-UTR-L-elsbetiae_contig13493:4082..41521622815519.1769915-UTR-L-elsbetiae_contig13493:4082..4152Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13493 4083..4152 -
1691682937.5566306-UTR-L-elsbetiae_contig13493:4082..41521691682937.5566306-UTR-L-elsbetiae_contig13493:4082..4152Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13493 4083..4152 -
1622815519.1901996-UTR-L-elsbetiae_contig13493:4617..46741622815519.1901996-UTR-L-elsbetiae_contig13493:4617..4674Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13493 4618..4674 -
1691682937.5665488-UTR-L-elsbetiae_contig13493:4617..46741691682937.5665488-UTR-L-elsbetiae_contig13493:4617..4674Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13493 4618..4674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13493.2676.1

>prot_L-elsbetiae_contig13493.2676.1 ID=prot_L-elsbetiae_contig13493.2676.1|Name=mRNA_L-elsbetiae_contig13493.2676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=189bp
MLSLTLARRVSWWESGKRAAARLTTTTATRSIVATRQRAASAKPTNTPGK
AAAAAVSARRRGASPLSTTAEPPRTSRDATPRWTPPATTTMATASFGKGC
RGRGGGNSNNSSSGWRNRRRLCGVATTPPTSTTGPGIDGESREEQSPAAV
AAAAAAAGSGPGGKGGEDVSSSGGGGGGGGGSSKGSDGS
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mRNA from alignment at L-elsbetiae_contig13493:3516..4674-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13493.2676.1 ID=mRNA_L-elsbetiae_contig13493.2676.1|Name=mRNA_L-elsbetiae_contig13493.2676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1159bp|location=Sequence derived from alignment at L-elsbetiae_contig13493:3516..4674- (Laminarionema elsbetiae ELsaHSoW15)
AGGTGTACACGTAATCATCACAGAGCCGGTCAAAAACCTTCTCCGCAGCG
CGCCTTGGTGAGTTCCTTCAATCCTGGGTGTAGCCAGCAGTAGCAGTACT
CCGAAAATGCCCGTAACTGTTGCAGGTGGTGCGTGATCATGGCAGCCTGC
CTGCGTGAGATGGTTCCCCTCTCTCCTCTCTCGACTCTCGGTGACTCGGG
TGCAGTTGTTAGTGGGCCACGCATGGAGTGCAGGGCTGATAGTAAATAGG
TGTTGGCATTGATGCTGCCTCGTTGCACTTCGGCAGGCGCGCTTCTGTGC
TTGTGAAGGAGAGTGTGAAGTCGGTGTGCTGCTTATGTATGTGCGCGAGT
CTTGACCTGCTGTGCCAGTACCACAGCGGTGGGTGTGCAAACGCCTCCCT
GCGATACAGTAGCTGTAATACGTAAGAGAGGTGCCAACCAGTGGGTGCCG
AACCTCTTGCATTGCGACTGAGCTCATATGTAGGATACCCCCCTAAAACC
CACACGTCTTTTCGTCACGCAGAGAAAGAGAGCATCTCCGCTTTTTCGAC
GCAAAACCGCCACCGGCCCCCTTGCGGCGGGCCTTCAAAAAAATGCTGTC
CCTTACACTGGCAAGGAGGGTGAGCTGGTGGGAGAGCGGGAAGCGAGCGG
CGGCGCGCTTGACAACGACAACCGCAACGCGCAGCATAGTCGCCACAAGG
CAGAGGGCAGCATCCGCGAAACCCACCAACACCCCTGGAAAGGCCGCAGC
GGCGGCAGTGTCAGCCAGGAGACGAGGCGCCTCGCCGCTAAGCACGACAG
CAGAGCCCCCGCGCACAAGTCGAGATGCGACGCCGCGGTGGACGCCGCCG
GCGACGACGACGATGGCGACCGCCAGCTTCGGTAAGGGTTGCCGCGGCCG
TGGCGGAGGTAACAGCAATAACAGTAGTAGCGGTTGGCGAAACCGACGGC
GGCTGTGCGGCGTGGCGACGACACCCCCTACGTCAACCACCGGGCCGGGG
ATCGACGGAGAAAGCAGGGAGGAGCAATCACCAGCAGCAGTAGCAGCAGC
AGCGGCTGCGGCAGGGTCGGGGCCAGGAGGGAAGGGGGGAGAGGACGTAA
GCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGTGGCAGCAGCAAGGGAAGC
GACGGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13493:3516..4674-

>mRNA_L-elsbetiae_contig13493.2676.1 ID=mRNA_L-elsbetiae_contig13493.2676.1|Name=mRNA_L-elsbetiae_contig13493.2676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1134bp|location=Sequence derived from alignment at L-elsbetiae_contig13493:3516..4674- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGTCCCTTACACTGGCAAGGAGGGTGAGCTGGTGGGAGAGCGGGAA
GCGAGCGGCGGCGCGCTTGACAACGACAACCGCAACGCGCAGCATAGTCG
CCACAAGGCAGAGGGCAGCATCCGCGAAACCCACCAACACCCCTGGAAAG
GCCGCAGCGGCGGCAGTGTCAGCCAGGAGACGAGGCGCCTCGCCGCTAAG
CACGACAGCAGAGCCCCCGCGCACAAGTCGAGATGCGACGCCGCGGTGGA
CGCCGCCGGCGACGACGACGATGGCGACCGCCAGCTTCGGTAAGGGTTGC
CGCGGCCGTGGCGGAGGTAACAGCAATAACAGTAGTAGCGGTTGGCGAAA
CCGACGGCGGCTGTGCGGCGTGGCGACGACACCCCCTACGTCAACCACCG
GGCCGGGGATCGACGGAGAAAGCAGGGAGGAGCAATCACCAGCAGCAGTA
GCAGCAGCAGCGGCTGCGGCAGGGTCGGGGCCAGGAGGGAAGGGGGGAGA
GGACGTAAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGTGGCAGCAGCA
AGGGAAGCGACGGCAGCATGCTGTCCCTTACACTGGCAAGGAGGGTGAGC
TGGTGGGAGAGCGGGAAGCGAGCGGCGGCGCGCTTGACAACGACAACCGC
AACGCGCAGCATAGTCGCCACAAGGCAGAGGGCAGCATCCGCGAAACCCA
CCAACACCCCTGGAAAGGCCGCAGCGGCGGCAGTGTCAGCCAGGAGACGA
GGCGCCTCGCCGCTAAGCACGACAGCAGAGCCCCCGCGCACAAGTCGAGA
TGCGACGCCGCGGTGGACGCCGCCGGCGACGACGACGATGGCGACCGCCA
GCTTCGGTAAGGGTTGCCGCGGCCGTGGCGGAGGTAACAGCAATAACAGT
AGTAGCGGTTGGCGAAACCGACGGCGGCTGTGCGGCGTGGCGACGACACC
CCCTACGTCAACCACCGGGCCGGGGATCGACGGAGAAAGCAGGGAGGAGC
AATCACCAGCAGCAGTAGCAGCAGCAGCGGCTGCGGCAGGGTCGGGGCCA
GGAGGGAAGGGGGGAGAGGACGTAAGCAGCAGCGGCGGCGGCGGCGGCGG
CGGCGGTGGCAGCAGCAAGGGAAGCGACGGCAGC
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