mRNA_L-elsbetiae_contig1349.2673.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1349.2673.1
Unique NamemRNA_L-elsbetiae_contig1349.2673.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1349.2673.1 vs. uniprot
Match: D7FLX7_ECTSI (PepX_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLX7_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 8.530e-39
Identity = 76/106 (71.70%), Postives = 83/106 (78.30%), Query Frame = 2 
Query:   14 LARSLPFYLHVSGWLDASAHAAIMAFTTVPCRGSELLIGPWSHGGHQHVRPQHVTTKSKFDFTTEVSGFLVRRLSPPPLSDAAAGSGTDSFAAGSCAPPGADPVHP 331
            L + LPFYLHVSGWLDASAHAA+MAFTT+PCRGSELL+GPW+HGGHQHVRP HVTT SKFDF TEVSGFLV+RLS    SD+A  S  DS  A     P ADP  P
Sbjct:  527 LDKILPFYLHVSGWLDASAHAAVMAFTTLPCRGSELLVGPWNHGGHQHVRPHHVTTLSKFDFKTEVSGFLVQRLSQDNPSDSAKAS--DSAKA-----PAADPEAP 625
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BLAST of mRNA_L-elsbetiae_contig1349.2673.1 vs. uniprot
Match: A0A835YUK7_9STRA (X-Pro dipeptidyl-peptidase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUK7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.660e-19
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 2 
Query:    5 RAELARSLPFYLHVSGWLDASAHAAIMAFTTVPCRGSELLIGPWSHGGHQHVRPQHV---TTKSKFDFTTEVSGFLVRRLSPPPLSDAAA 265
            RA LA +L  YLHVSGW+DASA A+++A+ T+PC    LLIGPW+HGG QHVR  H+   T+ + FDF  EVS F V+ L     S +AA
Sbjct:  253 RAALAAALLHYLHVSGWMDASASASLLAYHTLPCASRALLIGPWTHGGVQHVR-LHLDLKTSMATFDFAREVSDFFVKTLVQDATSPSAA 341
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BLAST of mRNA_L-elsbetiae_contig1349.2673.1 vs. uniprot
Match: A0A7C5N5J9_9DELT (CocE/NonD family hydrolase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7C5N5J9_9DELT)

HSP 1 Score: 57.0 bits (136), Expect = 4.170e-7
Identity = 31/74 (41.89%), Postives = 40/74 (54.05%), Query Frame = 2 
Query:   17 ARSLPFYLHVSGWLDAS-AHAAIMAFTTVPCRGSELLIGPWSHGGHQHVRPQHVTTKSKFDFTTEVSGFLVRRL 235
            A  +P Y + SGWLDA+  H AI     V   GS+L++GPW HGG  H  P   + K+ FD   E+  F  R L
Sbjct:  322 AADVPIYGY-SGWLDAAYQHGAIKRHRAVGGGGSQLIVGPWDHGGLGHTSPFSPSAKAAFDHDGELLRFFDRHL 394
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1349.2673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLX7_ECTSI8.530e-3971.70PepX_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835YUK7_9STRA7.660e-1953.33X-Pro dipeptidyl-peptidase-domain-containing prote... [more]
A0A7C5N5J9_9DELT4.170e-741.89CocE/NonD family hydrolase n=1 Tax=Polyangiaceae b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1349contigL-elsbetiae_contig1349:2203..4966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size344
Cds size342
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1349.2673.1prot_L-elsbetiae_contig1349.2673.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1349 2205..4966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.92572-CDS-L-elsbetiae_contig1349:2204..23571622815518.92572-CDS-L-elsbetiae_contig1349:2204..2357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1349 2205..2357 -
1691682937.4269717-CDS-L-elsbetiae_contig1349:2204..23571691682937.4269717-CDS-L-elsbetiae_contig1349:2204..2357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1349 2205..2357 -
1622815518.9375706-CDS-L-elsbetiae_contig1349:3996..40771622815518.9375706-CDS-L-elsbetiae_contig1349:3996..4077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1349 3997..4077 -
1691682937.4368355-CDS-L-elsbetiae_contig1349:3996..40771691682937.4368355-CDS-L-elsbetiae_contig1349:3996..4077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1349 3997..4077 -
1622815518.9531353-CDS-L-elsbetiae_contig1349:4858..49661622815518.9531353-CDS-L-elsbetiae_contig1349:4858..4966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1349 4859..4966 -
1691682937.4481323-CDS-L-elsbetiae_contig1349:4858..49661691682937.4481323-CDS-L-elsbetiae_contig1349:4858..4966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1349 4859..4966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1349.2673.1

>prot_L-elsbetiae_contig1349.2673.1 ID=prot_L-elsbetiae_contig1349.2673.1|Name=mRNA_L-elsbetiae_contig1349.2673.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
GAGGAGEVPAVLPARVRVAGRVRARRDHGIHDGPLQGLGAPYRPLEPRRP
PARETAARHHEIQVRLHDGGVGVSGPASLAAAPLRRCCGLGNGQLCSGLV
RSARRRPRTSGTTA
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mRNA from alignment at L-elsbetiae_contig1349:2203..4966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1349.2673.1 ID=mRNA_L-elsbetiae_contig1349.2673.1|Name=mRNA_L-elsbetiae_contig1349.2673.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2764bp|location=Sequence derived from alignment at L-elsbetiae_contig1349:2203..4966- (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGGGCGGAGCTGGCGAGGTCCCTGCCGTTCTACCTGCACGTGTCCG
GGTGGCTGGACGCGTCCGCGCACGCCGCGATCATGGCATTCACGACGGTC
CCCTGCAGGTGTGTATGTGCTTTGTCCGGCGGCATGCGGTCATCTCGTTG
TTGTCGTTGTTGTTGTCGTTGTTGTTGTTGTTGTTGTTGTTCCTGTTTCC
ACCGAAAACGGTCCCGATTTCCTCTACTCCGCGCCAATTGACAGAGTTCT
TGCTGGCCTGGCCGGCGGGAGGAGACTTATCCTTGTCTCTCTCCCTCTCC
CTCTCTCTCCCCCCCCCTCTCTCTCCCTCCCTCCCTCCCTCTCTCTCTCT
CTCTCTCTCTCTCCCTAGCTGTGTGCGTACTTGTGAGCTTCACGGGCTCA
GTGTCGAAGCGTGCTGGCAAATTTAATATCTCGCTTGTTGCGCTTCCTCG
CCCGAGTATTCCGTGATGAGGATTGCGTGCCACGTGTGTCTCGCTTCTAC
TTTATTTATAGGAAACTTCTACATAAAGGAAAACTCTGAACAGGAGTTTT
CGTCTCTAAGCGCGTTATATGATGCCTGTGGGTACGTTGGTAGGTGTTTG
TCTCGCAAGCATGTGACAGATACATACCTCGTGTGATGTGGGGGAGGGGG
GGCTACGATGGCGTGCGCCTCGCCTCCTGCTACATGCTTGTGCAGCACAC
AGCGCTGACTGCTGCTGTCACCTTGGCTCCGACAGGGTGGTGGTCTGTTC
TGCAAGCAGACGTTGTTTTTGTCCCTGCCTCATGCCGTATCTCTCCTGCT
TGCGGCGTCCTCGTTCACGTCATGCCAAATGGCACGTGTCATGTGTCATG
TCTAATGGCGATGTGTCAATGGTGTCGGGTCTCCTGCAGGGGCTCGGAGC
TCCTTATCGGCCCTTGGAGCCACGGAGGCCACCAGCACGTGAGACCGCAG
CACGTCACCACGAAATCCAAGTGAGGAGGCGTAGAAATAGCTATATGTAG
CCACAATTCGGCCGCCAGTTGCGCCGCCCTCTCTGGTTTCTGCGGGGGCC
CCCAGGATGGGATTCACGGGGTCTCCGAGCGGTCGGTTCGTCGCTTGTGC
CACCCATTCCTGTATGAATCCGAGGAGTTCCCTGCGTGTTTATCTGTGTG
TAGGCTCGGTGTTTTGGATCCGCGGGAGTTGGCTGGGTCTCGCTCCCGTT
GCTTTTGACTCCGCGATTTCCTGGCCCGCTGTTGTAGTTTTGTTGATGCT
TCGCTTTCAGCTGCGTCGGTTGCTCCAAAAGGGGGGGGGGGGGGGGGGCT
CCCGGAATGCGGGCTTGGAGCTACATACCCCCGTAAAACTCGATAAGCCC
ACAACCGAGGTTTGCTACGGTAGGCACTACTGTAGCCATTACACTGTATT
TTGTATTTTGGGCCCCGCAGACATCATTTTCTGACGGAAAAGGGGTGTGT
GTGGGGGATCTAACTCCTACGTAAAACCAAACGCCGATCGATACATCAGC
CCGGAATTTGGGGGGCGAAGGCAGGGCTGTGGCTACGAGCCTACATTCGA
GAGGCCGCTTCGCTCAGTCTCCGGGGTGCGACGTGTATGTTTGCGGGGGG
GGGGTATGTATGATTGTTTTATGATACCCGACGGCGCTAACCGCCTGGCC
AGCCAAGAGAAGGTTGGAGGGCACCTGAAGAGGCTTGTCTGCCAGGAGTG
AACCCACCCGTCAAGAAACCCCAGTCTTGGTCGACGAAAAAAGCAAAAGA
CGCAGTATGCTTTAGTTCTATGCTGCGGGGCCTCCTGAGGGAGCCGCGGT
TGAGACTCGCCCGAGGGGTGGGTCGGGGAAGCCCCCGCGTTGAGCATATC
TGTATCGCAGAGAGAACCTGTGCATGCGTGCGTTTCAGCCTGTGACGCTG
CCCGCCTGTGCTGGAGCCTTACAACTCTGCCGCTTCTTTTGAAGCTCATC
TTTTGCGTCCGGTCTACCGTAGGCGACACAAGACACCACACCCCCTGGAC
AGATTTTCAAAGCTCGATTCCTCCCCCAGCAAGAAGAGTGCCAGTGCCGA
AATGGGGTGGCGTTGGAAATATATAGTCGAGGGCTGTCCGAAAATGTGTC
GTTTCATGCTGGCGCCCTCTTCGCTACGGAGGAATCGAGCTTTGGAAATC
TGTCCAAGGGGGGGGGGGGGGTGGTACACTTACGGTATGCACAAAAGCGG
CACAGCGCTTCTCCTGTGCGACTGGGCCGTGCCGCCTATCCGTGTGTTGG
GCAACCCCATGAACGGCTGCGCGCTCTCACCCCACCTCACTCGCCACTCC
ACCAGAGTGCAGGTCAACAAACACACGCGGAGGGAAGGAACCAAACCGCA
GAAAAGCATACATACATGCATATATGTGACCCCGGTTGGATCGTCTAGCT
AGAGTAGAAGTGGAGGATGGGGGCCAGAGGGGCAGACGACAAAATCCAAT
AATGGGCAGACAAAAAAAAAATCTGTGTACCATATTTACGCAGGGGTGAT
ACATACCACCCACCCCTTTGCTCCAACCCCGTCACTCCTGGCCGGCATCC
TCCTCGTCGCGGCCCGGCCCCGTCCCTTTGATGTGCATACCGTCCGTCCC
CGTTTCAAGGTTCGACTTCACGACGGAGGTGTCGGGGTTTCTGGTCCGGC
GTCTCTCGCCGCCGCCCCTCTCAGACGCTGCTGCGGGCTCGGGAACGGAC
AGCTTTGCAGCGGGCTCGTGCGCTCCGCCAGGCGCCGACCCCGTACATCC
GGAACCACTGCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1349:2203..4966-

>mRNA_L-elsbetiae_contig1349.2673.1 ID=mRNA_L-elsbetiae_contig1349.2673.1|Name=mRNA_L-elsbetiae_contig1349.2673.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig1349:2203..4966- (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGGGCGGAGCTGGCGAGGTCCCTGCCGTTCTACCTGCACGTGTCCG
GGTGGCTGGACGCGTCCGCGCACGCCGCGATCATGGCATTCACGACGGTC
CCCTGCAGGGGGCGGGCGGAGCTGGCGAGGTCCCTGCCGTTCTACCTGCA
CGTGTCCGGGTGGCTGGACGCGTCCGCGCACGCCGCGATCATGGCATTCA
CGACGGTCCCCTGCAGGGGCTCGGAGCTCCTTATCGGCCCTTGGAGCCAC
GGAGGCCACCAGCACGTGAGACCGCAGCACGTCACCACGAAATCCAAGGG
CTCGGAGCTCCTTATCGGCCCTTGGAGCCACGGAGGCCACCAGCACGTGA
GACCGCAGCACGTCACCACGAAATCCAAGTTCGACTTCACGACGGAGGTG
TCGGGGTTTCTGGTCCGGCGTCTCTCGCCGCCGCCCCTCTCAGACGCTGC
TGCGGGCTCGGGAACGGACAGCTTTGCAGCGGGCTCGTGCGCTCCGCCAG
GCGCCGACCCCGTACATCCGGAACCACTGCCGTTCGACTTCACGACGGAG
GTGTCGGGGTTTCTGGTCCGGCGTCTCTCGCCGCCGCCCCTCTCAGACGC
TGCTGCGGGCTCGGGAACGGACAGCTTTGCAGCGGGCTCGTGCGCTCCGC
CAGGCGCCGACCCCGTACATCCGGAACCACTGCC
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