mRNA_L-elsbetiae_contig1347.2663.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1347.2663.1
Unique NamemRNA_L-elsbetiae_contig1347.2663.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1347.2663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1347contigL-elsbetiae_contig1347:1890..3807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size362
Cds size192
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1347.2663.1prot_L-elsbetiae_contig1347.2663.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1347 2060..3807 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.991002-UTR-L-elsbetiae_contig1347:1889..20591622815517.991002-UTR-L-elsbetiae_contig1347:1889..2059Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1347 1890..2059 +
1691682937.0474508-UTR-L-elsbetiae_contig1347:1889..20591691682937.0474508-UTR-L-elsbetiae_contig1347:1889..2059Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1347 1890..2059 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.006988-CDS-L-elsbetiae_contig1347:2059..21371622815518.006988-CDS-L-elsbetiae_contig1347:2059..2137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1347 2060..2137 +
1691682937.060419-CDS-L-elsbetiae_contig1347:2059..21371691682937.060419-CDS-L-elsbetiae_contig1347:2059..2137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1347 2060..2137 +
1622815518.022414-CDS-L-elsbetiae_contig1347:3693..38071622815518.022414-CDS-L-elsbetiae_contig1347:3693..3807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1347 3694..3807 +
1691682937.0701582-CDS-L-elsbetiae_contig1347:3693..38071691682937.0701582-CDS-L-elsbetiae_contig1347:3693..3807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1347 3694..3807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1347.2663.1

>prot_L-elsbetiae_contig1347.2663.1 ID=prot_L-elsbetiae_contig1347.2663.1|Name=mRNA_L-elsbetiae_contig1347.2663.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
MSLGSVSLPLTEGKEGYLVCGGVNSQSTLRVGGLLMSYPRSPRCVWERRE
ECKAGMRTTKLRYS
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mRNA from alignment at L-elsbetiae_contig1347:1890..3807+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1347.2663.1 ID=mRNA_L-elsbetiae_contig1347.2663.1|Name=mRNA_L-elsbetiae_contig1347.2663.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1918bp|location=Sequence derived from alignment at L-elsbetiae_contig1347:1890..3807+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGGGGCCAGGCTGGAGCTTCAGGCAAAAGAAAGATGGGCGCTGGAGCT
TGCGGCGAAGTAAAGATGGACGCCAGTTGAAGCTAGTTCTGGTATGAACT
CGGAAGGACCTCGTTCACGCTGCCGAAGCTGGGCTGGCGTATTCCGGCTT
ACGGGTTTCATGTTGGAAACATGTCACTCGGCTCTGTGTCTCTCCCGCTG
ACCGAAGGGAAAGAGGGCTACCTTGTATGTGGAGGAGTTAATAGCCAGGT
GAGGGAAGAAGCAGTCCCGGCCTTCTCGGTCTATGAAAAGGTGTGTCACT
TATGAGTAGTGAAGCTGTAGTGAACATGTGAAGGTTGTGTGTCCGGTTAT
TTTTGTAGCCCACTGCTGTTCGTTGATTGGTTGTTTGCGGTGACGCGGTG
ACCAACATGTCGCATTTTGGAGGTATGTACAGTAGTAGTAGTGAGTAAAC
ACATATATACTCCGTATGTCAGATATCTTGGCTACCAGTGTGATTGCAGT
TCTAGTCGAAGGAGGCGCAACATTGTCCAAAAACGAGCTGTTCTTTGGTA
AGTGCTCGCCGCTGAGTGCAGTTTTTTTTTTAGGACGAAATAGGATTGCC
TACTCTCTGTTTTATGTACCTACATCTGTAGCTCTGGTGTTCCTAGGGTG
CAGCAGGAAAAACGAAGCGAATCGATGCTCTGGCCGCGGAGTATGGGGTG
TTTTGGGTGACCAAACAAGTACGACGGGGCCTCGCAGGCAAAAATCACGC
TCATAATGAGTCGCGCGAGCGAAAGCGAGCCTTTTTTTTTCGAAAATGGA
CATTTGGGGTAAGTATACCCCCGTACTTGTCGGACTTTTGGGGGTAGCCT
GTGAACACAGCATCTGGGGCTGTCAGCAGTCGCCCAGAAGCACACTCGGA
AATCGATTCTCGCGCGCTTACAGCACGCACAAGGACCATCCCAAGCAAGC
CAAACAACTTCCACGAAAATTCAGGGACGTTTTCAGCCTACACAGCGCCA
GGGTGCACACGGGCCCGGCAGCATACCCCCGTTTGTCCGATGTCCCGGGG
GGTGTACCCCGAAGACTCTACTATTTTCATCCTATTACCCCCATCTGTCT
GCATTTGGCCCCCACTTGTCCGAAGAACCCCCGCCTGTCCGCGCTTTCGG
AGCCCTCCGCGGCCCTACCCCGAATAGACCGCGGCACAACGGCACAACAA
AAACGAGCAGCCCACACGATGCGGACCAGCATATCCTCCTCGCGGATTCC
GTCTGAAAAGCCAGACGGAATCGTCAGACGGATTGATGTTTTAGACCTTG
CGCGATAGAAACGCGACCCCTGCCACAAAAAAAATAGCTGGGGAGACGCT
CAGAGGTGTGAAGCATATGTACATCCCTCTTCGTCCGGTGGCAATCCGTT
GGCTATGGACCGAGGCAGCGGCGTTCATGTGGTGTTTTTTCCATTTCGTT
TGTCTCTCTGTGAGCCCCCCCAAAATTCCGTTCGGGCCTAAATTCAGTTC
CCATAAGATCCGGCCTAAGCCTCTCGCTATCCGCCACTTTGCCTCCTTGC
TCTTGGCTTTTGGTCATCGTTGACTTTGTTTGGAGGCGTTGGCATTCAAA
ACTTGTACTAGCCGCCGCATGTTCGGTGTCACTGTTGCGGTGTTTGGTAT
CCCGATCCCTGAGCCCTCGACCTCGGCTATCTCATGTGCGGTCGTGTGCG
GCGGCTTTGCTGTCGACTCTGCGAGCCCGTTGTTCCCCTGTTCCTTAAAA
TTGCTCGTTTTATGTTTGCCTTTTTCCGCCCCTTCCCCTGGTCCCGAAAT
CTAGAGTACGCTACGAGTGGGGGGCCTGCTGATGAGTTATCCACGGAGCC
CCCGATGTGTGTGGGAAAGGAGAGAGGAGTGCAAGGCTGGGATGCGCACC
ACCAAACTTCGATACAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1347:1890..3807+

>mRNA_L-elsbetiae_contig1347.2663.1 ID=mRNA_L-elsbetiae_contig1347.2663.1|Name=mRNA_L-elsbetiae_contig1347.2663.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig1347:1890..3807+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCACTCGGCTCTGTGTCTCTCCCGCTGACCGAAGGGAAAGAGGGCTA
CCTTGTATGTGGAGGAGTTAATAGCCAGATGTCACTCGGCTCTGTGTCTC
TCCCGCTGACCGAAGGGAAAGAGGGCTACCTTGTATGTGGAGGAGTTAAT
AGCCAGAGTACGCTACGAGTGGGGGGCCTGCTGATGAGTTATCCACGGAG
CCCCCGATGTGTGTGGGAAAGGAGAGAGGAGTGCAAGGCTGGGATGCGCA
CCACCAAACTTCGATACAGCAGTACGCTACGAGTGGGGGGCCTGCTGATG
AGTTATCCACGGAGCCCCCGATGTGTGTGGGAAAGGAGAGAGGAGTGCAA
GGCTGGGATGCGCACCACCAAACTTCGATACAGC
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