mRNA_L-elsbetiae_contig13469.2661.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13469.2661.1
Unique NamemRNA_L-elsbetiae_contig13469.2661.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13469.2661.1 vs. uniprot
Match: A0A6H5JB06_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB06_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 9.060e-57
Identity = 154/291 (52.92%), Postives = 185/291 (63.57%), Query Frame = 1 
Query:   34 LAMVAIPTSPAEAFVNPPAAFPPPSAAWQRGRATAP----ASSLTPQAALASALFSGPGCPIAAAASERECAGARLRFTAGRERRHERFSSGLGSPLRSSPGGDSGTPESGDSXDEDPSDPVGDGPAGMPDNSQELREKLETIAANTPPPVVEGVAGG---LTKEEQEALEALXEDXXXXXXXERREAAMQAKSLNLYAYS-DEDDEEDPDAEK--YEEIIANMTKPLGITIEESTDRAKLVYITSVGEKAEAAGLQVGDVLTGASAVFGDAVWSVKEKSIAEIRSLVGCR 876
            LAM+A  T PAEAF  PPA    P ++W++ + T      AS  +P  A  +  FS    P A  ASER   GARLR   G++RR   FSS LG PLRSSP          D   +DPS        GM + S++LREKLETIA+ +      G  GG   LT++EQE L+ + ED       +R EAA +AKS++ +  S DEDD+   +AE   YEEIIANMTKPLGITIEESTD+AKLVYITSVG+KAEAAGLQVGDVLTG SAVFGD VWSV +K+I EIRSLV CR
Sbjct:   34 LAMLATSTLPAEAFFTPPAV---PPSSWKQQQDTVARTMMASFQSPTNAGVANSFS--RNPAAIDASER--GGARLRVERGQQRR---FSSSLGRPLRSSPS---------DGGSDDPSS------QGMSE-SEKLREKLETIASAS------GEGGGEDGLTQKEQEELDEMEEDRRVEAEVDRLEAAEKAKSMDAFRMSLDEDDDXXXNAEDEVYEEIIANMTKPLGITIEESTDKAKLVYITSVGDKAEAAGLQVGDVLTGVSAVFGDEVWSVNDKNIEEIRSLVRCR 292
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BLAST of mRNA_L-elsbetiae_contig13469.2661.1 vs. uniprot
Match: W7U9U3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9U3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.780e-9
Identity = 31/77 (40.26%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:  649 KYEEIIANMTKPLGITIEESTDRAKLVYITSVGEKAEAAGLQVGDVLTGASAVFGDA-VWSVKEKSIAEIRSLVGCR 876
            ++EE + N++KPLG+ +EE+ D + +VY+    EKA+AAG++VGDV+ G S +F D+ + +V  K +  + SL+  R
Sbjct:   97 QFEEYVVNVSKPLGVAVEEAGDGSGMVYVVEANEKAQAAGVEVGDVIVGCSFIFDDSYLVNVTGKGVERVESLIRSR 173
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BLAST of mRNA_L-elsbetiae_contig13469.2661.1 vs. uniprot
Match: A0A7S1XUN2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUN2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.300e-8
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:  637 PDAEKYEEIIANMTKPLGITIEES-TDRAKLVYITSVGEKAEAAGLQVGDVLTGASAVFGDAVWSVKEKSIAEIRSLVGCR 876
            P+AE  E +   + +PLGI   ES   R   V +T  GEKA  AGL+VGD++TG S +FGD +W ++E  +A++R L+  R
Sbjct:   38 PEAE--EVLKVEIMRPLGIRAFESLAARVPTVVVTKAGEKAIEAGLEVGDIITGVSGIFGDDIWDIREGGLAKVRELIEFR 116
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BLAST of mRNA_L-elsbetiae_contig13469.2661.1 vs. uniprot
Match: A0A7S3JT56_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JT56_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.280e-8
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:  652 YEEIIANMTKPLGITIEESTDRAKLVYITSVGEKAEAAGLQVGDVLTGASAVFGDAVWSVKEKSIAEIRSLVGCR 876
            YEE    + +PLG+ ++E+ D    VYI +    A AAG+Q GDV+T ASAVFGD +W V+   +  I SL+  R
Sbjct:   43 YEEYTVELQRPLGLRVQEALDGT--VYIVTSAGNAAAAGVQPGDVVTKASAVFGDDLWDVRSAGLKRIESLIRAR 115
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13469.2661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JB06_9PHAE9.060e-5752.92PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
W7U9U3_9STRA1.780e-940.26Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1XUN2_9STRA2.300e-843.21Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3JT56_9STRA3.280e-844.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13469contigL-elsbetiae_contig13469:178..2674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-14_001120.1
Exons3
Model size879
Cds size879
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13469.2661.1prot_L-elsbetiae_contig13469.2661.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13469 178..2674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.8782482-CDS-L-elsbetiae_contig13469:177..8251622815517.8782482-CDS-L-elsbetiae_contig13469:177..825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13469 178..825 +
1691682937.0024223-CDS-L-elsbetiae_contig13469:177..8251691682937.0024223-CDS-L-elsbetiae_contig13469:177..825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13469 178..825 +
1622815517.8888624-CDS-L-elsbetiae_contig13469:1083..11881622815517.8888624-CDS-L-elsbetiae_contig13469:1083..1188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13469 1084..1188 +
1691682937.0137277-CDS-L-elsbetiae_contig13469:1083..11881691682937.0137277-CDS-L-elsbetiae_contig13469:1083..1188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13469 1084..1188 +
1622815517.8983903-CDS-L-elsbetiae_contig13469:2548..26741622815517.8983903-CDS-L-elsbetiae_contig13469:2548..2674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13469 2549..2674 +
1691682937.0235224-CDS-L-elsbetiae_contig13469:2548..26741691682937.0235224-CDS-L-elsbetiae_contig13469:2548..2674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13469 2549..2674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13469.2661.1

>prot_L-elsbetiae_contig13469.2661.1 ID=prot_L-elsbetiae_contig13469.2661.1|Name=mRNA_L-elsbetiae_contig13469.2661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=293bp
RATAAAAVAITLAMVAIPTSPAEAFVNPPAAFPPPSAAWQRGRATAPASS
LTPQAALASALFSGPGCPIAAAASERECAGARLRFTAGRERRHERFSSGL
GSPLRSSPGGDSGTPESGDSGDEDPSDPVGDGPAGMPDNSQELREKLETI
AANTPPPVVEGVAGGLTKEEQEALEALEEDRRDQEEMERREAAMQAKSLN
LYAYSDEDDEEDPDAEKYEEIIANMTKPLGITIEESTDRAKLVYITSVGE
KAEAAGLQVGDVLTGASAVFGDAVWSVKEKSIAEIRSLVGCR*
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mRNA from alignment at L-elsbetiae_contig13469:178..2674+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13469.2661.1 ID=mRNA_L-elsbetiae_contig13469.2661.1|Name=mRNA_L-elsbetiae_contig13469.2661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2497bp|location=Sequence derived from alignment at L-elsbetiae_contig13469:178..2674+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGCGACAGCTGCAGCGGCTGTGGCTATTACCCTCGCGATGGTAGCGAT
ACCGACTAGCCCGGCGGAGGCCTTCGTCAACCCACCCGCCGCATTCCCGC
CTCCGTCAGCGGCCTGGCAGCGCGGCCGGGCGACAGCGCCAGCCTCGTCA
TTAACCCCTCAAGCCGCGCTGGCGTCGGCCTTGTTTTCAGGCCCAGGCTG
CCCGATCGCGGCAGCTGCCTCGGAACGCGAGTGCGCCGGGGCAAGGCTAC
GGTTCACGGCGGGGAGAGAGAGGCGGCACGAGAGATTCAGCAGCGGCCTC
GGCAGCCCCCTCCGCTCCTCCCCCGGCGGCGACAGCGGCACCCCCGAAAG
CGGCGACAGCGGGGACGAAGACCCCAGCGACCCCGTCGGCGACGGCCCTG
CCGGAATGCCGGATAATAGCCAGGAGCTGCGGGAGAAGCTGGAGACGATC
GCGGCCAACACACCGCCCCCCGTCGTGGAGGGCGTAGCCGGAGGGCTCAC
CAAGGAGGAGCAGGAGGCGCTGGAGGCGCTGGAGGAGGACAGGAGGGATC
AAGAGGAGATGGAGCGCCGGGAGGCGGCGATGCAGGCGAAGAGCTTGAAC
CTGTACGCGTACTCGGATGAGGACGACGAGGAGGATCCCGATGCGGAGGT
GAGAGCAGCCGGGTTCTTGTGCCCACCGTTGCTGACTGCTGTAGCACCTG
TGCCTGCGTTCCATGCCTCTGCGTTCCATGCCTGCGCTCCGTGCCTGCGC
TCCGTGCCTGCATTCCGTGCCTGCGTCTATGTATGCATCTACGTAATTGT
GCATACTTACGTGCGTTTTTGCGTACATCCGCGTTCATTCTCCGTAGATT
AGATCTGACCGATGGCTGCTTGTTGTCTGTTTCGAACGAACGTGGACATG
GCGCAGAAGTATGAGGAGATCATCGCAAACATGACCAAACCTCTGGGCAT
TACCATCGAGGAGAGCACGGACAGAGCGAAGCTCGTGTACATCACCAGCG
TCGGCGAAAAGGTATGCTGTTTGTTCGACCTTGCTAGAAACAGATGCATG
TACGAAGTATTTGAGTATCGTTGTCATGCGGGGTTATCGCACCCGGTGCG
AGCGCGTTTTTGAGTGTTTCTTCCTTGGGTTGTTTGTATCGCACCCCGGT
GCGATAACCCCGACGGGTGCCAAAACCCCGATGGGGGTGCGCAAACACAA
TGAAATCATATATACCGTTCTTAGTATTTACGCAACCCCGGTGCGATTAC
GCCGATGGGTGCGATACGCTGAATCATATTACACCGGGCCGTACTTGGGG
CAACGGTGCTGCATATATGCACCCGGTGCGATCTCTCCGATGGGTGCGAT
ACCGAGTACCACCACAGCAGCTTATTGATCGTTACCACAGCGGCTTAGTG
ACCCGTAGGTAGCATTGTTGCTAGCTGAAGGAAGGGTTCGGTATCGGGCC
GAAAGCGAGCTGGGTTGCTACGGCGTGTGGTAATAGGACGACCAACGATG
CTGCTGAGTGTTGTCTGCCGCAATGTCACGTACAATATCGGTTTGTCGTA
TCGGTGAGTGTTGAACCACTCGATTCTCTTTCTCGTTCCTGTCTGCTTCG
GATGTACGGTATGCACTGTATTTTGCGTGCTTTTATGGTGGGCTTTAGGC
GGCAGCGCCGTCGGTACCGAGGTACCTTATGTATGTATGTTGGGTTAACA
GCATATGAAACGATTGGCGTGACGTATTTGAACGCGTGAACTGCGTCAGT
GCAATAATGATACGTGAGTGGTTTATCTTTCACCGAACGTAACTCCAAAG
GAACAACATACGGCCCGTTGCGGCAGCACTCAATCTTGGATTGATGTCGG
CGTTATCGCACCCGGTGCGATAACCCCGATGGGGGTGCGAAAATGCAATT
ATTTGTTTTTTGTATTTTTTATCGCGCCCTGGTGCCATAACCCCGATGGG
TGCCAAACCCCCTTATGGGCGCGATAACCCGCATGATTACGGTGTTTCGT
TTTTCCCGAGGGTTTTTCAGGGACCAACGTAGTGGTGGTCTCGCTGCCCT
CCGTAGTCAGTTGCATGGTTTTCCTCTCAATTGTCCACCCGGCACCGGCC
ACTGCCTGACTTGTTTTCCACCCCCCCGTTAAGCCTCTTTTTGGAGCTGC
CCTGCCGTCCCTACCAACGTTACTGTGTGTTTTTTCAACCCGCATCAGCC
AGCGGCTGGTCAAAACCCACGCCACACTATTGTGTCGCTGTTGTCGTCGC
CACCGGCTCTGCTGCGATGCTCAACGCTCACGTGTGGTGCCGATGTCCTT
GTCTGTGTCCATGCTCTCACGCTGGTGGTGATGCCGATACCTTTGTATGT
CGACCTTTTTCGGTTGGGCAGGCTGAAGCCGCCGGGCTCCAGGTTGGCGA
CGTGCTGACCGGCGCGAGTGCCGTCTTCGGAGATGCAGTGTGGTCAGTCA
AGGAGAAATCTATCGCGGAAATACGCTCGCTTGTCGGATGCAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13469:178..2674+

>mRNA_L-elsbetiae_contig13469.2661.1 ID=mRNA_L-elsbetiae_contig13469.2661.1|Name=mRNA_L-elsbetiae_contig13469.2661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1758bp|location=Sequence derived from alignment at L-elsbetiae_contig13469:178..2674+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGCGACAGCTGCAGCGGCTGTGGCTATTACCCTCGCGATGGTAGCGAT
ACCGACTAGCCCGGCGGAGGCCTTCGTCAACCCACCCGCCGCATTCCCGC
CTCCGTCAGCGGCCTGGCAGCGCGGCCGGGCGACAGCGCCAGCCTCGTCA
TTAACCCCTCAAGCCGCGCTGGCGTCGGCCTTGTTTTCAGGCCCAGGCTG
CCCGATCGCGGCAGCTGCCTCGGAACGCGAGTGCGCCGGGGCAAGGCTAC
GGTTCACGGCGGGGAGAGAGAGGCGGCACGAGAGATTCAGCAGCGGCCTC
GGCAGCCCCCTCCGCTCCTCCCCCGGCGGCGACAGCGGCACCCCCGAAAG
CGGCGACAGCGGGGACGAAGACCCCAGCGACCCCGTCGGCGACGGCCCTG
CCGGAATGCCGGATAATAGCCAGGAGCTGCGGGAGAAGCTGGAGACGATC
GCGGCCAACACACCGCCCCCCGTCGTGGAGGGCGTAGCCGGAGGGCTCAC
CAAGGAGGAGCAGGAGGCGCTGGAGGCGCTGGAGGAGGACAGGAGGGATC
AAGAGGAGATGGAGCGCCGGGAGGCGGCGATGCAGGCGAAGAGCTTGAAC
CTGTACGCGTACTCGGATGAGGACGACGAGGAGGATCCCGATGCGGAGAG
AGCGACAGCTGCAGCGGCTGTGGCTATTACCCTCGCGATGGTAGCGATAC
CGACTAGCCCGGCGGAGGCCTTCGTCAACCCACCCGCCGCATTCCCGCCT
CCGTCAGCGGCCTGGCAGCGCGGCCGGGCGACAGCGCCAGCCTCGTCATT
AACCCCTCAAGCCGCGCTGGCGTCGGCCTTGTTTTCAGGCCCAGGCTGCC
CGATCGCGGCAGCTGCCTCGGAACGCGAGTGCGCCGGGGCAAGGCTACGG
TTCACGGCGGGGAGAGAGAGGCGGCACGAGAGATTCAGCAGCGGCCTCGG
CAGCCCCCTCCGCTCCTCCCCCGGCGGCGACAGCGGCACCCCCGAAAGCG
GCGACAGCGGGGACGAAGACCCCAGCGACCCCGTCGGCGACGGCCCTGCC
GGAATGCCGGATAATAGCCAGGAGCTGCGGGAGAAGCTGGAGACGATCGC
GGCCAACACACCGCCCCCCGTCGTGGAGGGCGTAGCCGGAGGGCTCACCA
AGGAGGAGCAGGAGGCGCTGGAGGCGCTGGAGGAGGACAGGAGGGATCAA
GAGGAGATGGAGCGCCGGGAGGCGGCGATGCAGGCGAAGAGCTTGAACCT
GTACGCGTACTCGGATGAGGACGACGAGGAGGATCCCGATGCGGAGAAGT
ATGAGGAGATCATCGCAAACATGACCAAACCTCTGGGCATTACCATCGAG
GAGAGCACGGACAGAGCGAAGCTCGTGTACATCACCAGCGTCGGCGAAAA
GAAGTATGAGGAGATCATCGCAAACATGACCAAACCTCTGGGCATTACCA
TCGAGGAGAGCACGGACAGAGCGAAGCTCGTGTACATCACCAGCGTCGGC
GAAAAGGCTGAAGCCGCCGGGCTCCAGGTTGGCGACGTGCTGACCGGCGC
GAGTGCCGTCTTCGGAGATGCAGTGTGGTCAGTCAAGGAGAAATCTATCG
CGGAAATACGCTCGCTTGTCGGATGCAGGTGAGCTGAAGCCGCCGGGCTC
CAGGTTGGCGACGTGCTGACCGGCGCGAGTGCCGTCTTCGGAGATGCAGT
GTGGTCAGTCAAGGAGAAATCTATCGCGGAAATACGCTCGCTTGTCGGAT
GCAGGTGA
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