mRNA_L-elsbetiae_contig13459.2656.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig13459.2656.1
Unique Name	mRNA_L-elsbetiae_contig13459.2656.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig13459.2656.1 vs. uniprot
Match: A0A6H5L0U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U3_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 2.570e-64
Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 1

Query:    1 RVIDDIHRSKSNMSDRERVSWVSRKVSSYIYADVTAGRLGPEEGGRHREALVQEFHRSYGGRCNLCNHELIWAVYSERQPTLDRLDCSLPHTIGNVDVKCLKCNRAR 321
            RVIDDIHRSKS+MSDRER SWVSRKVSSYIYADV A RLG +EGG+HREALVQE HRSYGGRCNLCNH+L+WAVYSERQPTLDRLDC+LPHTI NVDVKCLKCNRAR
Sbjct:  254 RVIDDIHRSKSDMSDRERASWVSRKVSSYIYADVAAERLGSDEGGQHREALVQELHRSYGGRCNLCNHDLVWAVYSERQPTLDRLDCALPHTIDNVDVKCLKCNRAR 360

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BLAST of mRNA_L-elsbetiae_contig13459.2656.1 vs. uniprot
Match: A0A6H5KWL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL4_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 6.080e-61
Identity = 96/107 (89.72%), Postives = 101/107 (94.39%), Query Frame = 1

Query:    1 RVIDDIHRSKSNMSDRERVSWVSRKVSSYIYADVTAGRLGPEEGGRHREALVQEFHRSYGGRCNLCNHELIWAVYSERQPTLDRLDCSLPHTIGNVDVKCLKCNRAR 321
            RVIDDI+RSKS+MSDRER SWVSRKVSSYIYADV A RLG +EGG+HREALVQE HRSYGGRCNLCNHELIW VYSERQPTLDRLDC+LPHTIGNVDVKCLKCNRAR
Sbjct:  699 RVIDDIYRSKSDMSDRERASWVSRKVSSYIYADVAAERLGSDEGGQHREALVQELHRSYGGRCNLCNHELIWTVYSERQPTLDRLDCALPHTIGNVDVKCLKCNRAR 805

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BLAST of mRNA_L-elsbetiae_contig13459.2656.1 vs. uniprot
Match: A0A6H5L2B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B8_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.420e-58
Identity = 93/107 (86.92%), Postives = 100/107 (93.46%), Query Frame = 1

Query:    1 RVIDDIHRSKSNMSDRERVSWVSRKVSSYIYADVTAGRLGPEEGGRHREALVQEFHRSYGGRCNLCNHELIWAVYSERQPTLDRLDCSLPHTIGNVDVKCLKCNRAR 321
            RVIDDIHRS+SNMSDRERVSWV+RKVSSYIYADV AGR+  ++GG+HREALVQE HRSYGGRCNLCN ELIW + SERQPTLDRLDCSLPHTIGNVDVKCLKCNRAR
Sbjct: 1362 RVIDDIHRSESNMSDRERVSWVTRKVSSYIYADVAAGRIKSDDGGQHREALVQELHRSYGGRCNLCNRELIWTINSERQPTLDRLDCSLPHTIGNVDVKCLKCNRAR 1468

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BLAST of mRNA_L-elsbetiae_contig13459.2656.1 vs. uniprot
Match: A0A6H5J754_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J754_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 6.600e-58
Identity = 94/108 (87.04%), Postives = 100/108 (92.59%), Query Frame = 1

Query:    1 RVIDDIHRSKSNMSDRERVSWVSRKVSSYIYADVTAGRLGPEEGGRHREALVQEFHRSYGGRCNLCNHELIWAVYSERQPTLDRLDCSLPHTIGNV-DVKCLKCNRAR 321
            RVIDDIHRS+S+MSDRERVSWVSRK SSYIYADV AGR+  +EGG+HREALVQE HRSYGGRCNLCNHEL W VYSERQPTLDRLDC+LPHTIGNV DVKCLKCNRAR
Sbjct: 1138 RVIDDIHRSESDMSDRERVSWVSRKASSYIYADVAAGRIKSDEGGQHREALVQELHRSYGGRCNLCNHELTWTVYSERQPTLDRLDCALPHTIGNVVDVKCLKCNRAR 1245

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BLAST of mRNA_L-elsbetiae_contig13459.2656.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 4.240e-57
Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 1

Query:    1 RVIDDIHRSKSNMSDRERVSWVSRKVSSYIYADVTAGRLGPEEGGRHREALVQEFHRSYGGRCNLCNHELIWAVYSERQPTLDRLDCSLPHTIGNVDVKCLKCNRAR 321
            RVIDDIHRSKS+MSDRER SW+S KVSSYIYADV A RLG +EGG++REALVQE  RSYGGRCNLCNH+L+WAVYSERQPTLDRLDC+LPHTI NVDVKCLKCNRAR
Sbjct: 1128 RVIDDIHRSKSDMSDRERASWISGKVSSYIYADVAAERLGSDEGGQYREALVQELQRSYGGRCNLCNHDLVWAVYSERQPTLDRLDCALPHTIDNVDVKCLKCNRAR 1234

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BLAST of mRNA_L-elsbetiae_contig13459.2656.1 vs. uniprot
Match: A0A6H5KCL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCL4_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 5.230e-57
Identity = 90/107 (84.11%), Postives = 98/107 (91.59%), Query Frame = 1

Query:    1 RVIDDIHRSKSNMSDRERVSWVSRKVSSYIYADVTAGRLGPEEGGRHREALVQEFHRSYGGRCNLCNHELIWAVYSERQPTLDRLDCSLPHTIGNVDVKCLKCNRAR 321
            RVIDD+HR++SNMS RER SWVSRKVSSYIY +VTAGRL  ++GG+HREALVQE HRSYGGRCNLCNHE IWAVYSERQPTLDRLDCSLPHT  NVDV+CLKCNRAR
Sbjct:  683 RVIDDVHRNESNMSHRERASWVSRKVSSYIYTNVTAGRLRADDGGQHREALVQELHRSYGGRCNLCNHEPIWAVYSERQPTLDRLDCSLPHTAENVDVQCLKCNRAR 789

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BLAST of mRNA_L-elsbetiae_contig13459.2656.1 vs. uniprot
Match: D7FV89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV89_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 2.000e-56
Identity = 88/106 (83.02%), Postives = 96/106 (90.57%), Query Frame = 1

Query:    4 VIDDIHRSKSNMSDRERVSWVSRKVSSYIYADVTAGRLGPEEGGRHREALVQEFHRSYGGRCNLCNHELIWAVYSERQPTLDRLDCSLPHTIGNVDVKCLKCNRAR 321
            VIDD HR  SNMSDRER SWVSRKVSSYIYAD+ +GRLG +EGG+HREAL QE HR+Y G CNLC+HEL+WAVYSERQPTLDRLDC+LPHTIGNVDVKCLKCNRAR
Sbjct: 1109 VIDDAHRRDSNMSDRERASWVSRKVSSYIYADIASGRLGSDEGGQHREALAQELHRAYRGTCNLCHHELVWAVYSERQPTLDRLDCALPHTIGNVDVKCLKCNRAR 1214

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BLAST of mRNA_L-elsbetiae_contig13459.2656.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 3.310e-55
Identity = 91/107 (85.05%), Postives = 97/107 (90.65%), Query Frame = 1

Query:    1 RVIDDIHRSKSNMSDRERVSWVSRKVSSYIYADVTAGRLGPEEGGRHREALVQEFHRSYGGRCNLCNHELIWAVYSERQPTLDRLDCSLPHTIGNVDVKCLKCNRAR 321
            RVIDDIHRS+S+MSDRERVSWVSRKVSSYIYADV AGRLGPEEG RHREALVQE   SYGGRC+ C  EL+WAVYSE+QPTLDRLDCSLPHT  NVDVKCL+CNRAR
Sbjct: 1299 RVIDDIHRSESDMSDRERVSWVSRKVSSYIYADVAAGRLGPEEGRRHREALVQELLNSYGGRCHRCTCELVWAVYSEQQPTLDRLDCSLPHTAENVDVKCLRCNRAR 1405

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BLAST of mRNA_L-elsbetiae_contig13459.2656.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.380e-53
Identity = 85/106 (80.19%), Postives = 97/106 (91.51%), Query Frame = 1

Query:    4 VIDDIHRSKSNMSDRERVSWVSRKVSSYIYADVTAGRLGPEEGGRHREALVQEFHRSYGGRCNLCNHELIWAVYSERQPTLDRLDCSLPHTIGNVDVKCLKCNRAR 321
            VI+DIHRS+SNMSD ER+SWV RK+SSYIYADVTAGRLGP+EG +HREAL +E   SYGGRC+LC+ EL+WAVYSERQPTLDRLDCSLPHT+ NVDVKCL+CNRAR
Sbjct: 1335 VIEDIHRSESNMSDLERISWVYRKISSYIYADVTAGRLGPDEGMQHREALAEELLNSYGGRCSLCSCELVWAVYSERQPTLDRLDCSLPHTVDNVDVKCLRCNRAR 1440

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BLAST of mRNA_L-elsbetiae_contig13459.2656.1 vs. uniprot
Match: A0A6H5JTY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTY9_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.630e-52
Identity = 86/107 (80.37%), Postives = 94/107 (87.85%), Query Frame = 1

Query:    1 RVIDDIHRSKSNMSDRERVSWVSRKVSSYIYADVTAGRLGPEEGGRHREALVQEFHRSYGGRCNLCNHELIWAVYSERQPTLDRLDCSLPHTIGNVDVKCLKCNRAR 321
            RVIDDIHRS+S+M  R R SWVSRKVSSY+YADVTAGRLGPEEGGRHREALVQE   SYGGRCNLC  E+IWA++SER P LDRLDCSLP+T  NVDVKCL+CNRAR
Sbjct: 1109 RVIDDIHRSESDMPGRVRTSWVSRKVSSYVYADVTAGRLGPEEGGRHREALVQELLNSYGGRCNLCTCEIIWAIFSERHPMLDRLDCSLPNTAENVDVKCLRCNRAR 1215

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig13459.2656.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig13459.2656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L0U3_9PHAE	2.570e-64	88.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KWL4_9PHAE	6.080e-61	89.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L2B8_9PHAE	1.420e-58	86.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J754_9PHAE	6.600e-58	87.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FQN9_ECTSI	4.240e-57	85.05	Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2...	[more]
A0A6H5KCL4_9PHAE	5.230e-57	84.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FV89_ECTSI	2.000e-56	83.02	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KSM3_9PHAE	3.310e-55	85.05	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JCS9_9PHAE	1.380e-53	80.19	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTY9_9PHAE	1.630e-52	80.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig13459	contig	L-elsbetiae_contig13459:15..335 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	198.0
Seed ortholog evalue	2.3e-48
Seed eggNOG ortholog	2880.D7FQN9
Hectar predicted targeting category	other localisation
EggNOG OGs	2E3IK@1,2SAKM@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	321
Cds size	321
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815517.4148383-CDS-L-elsbetiae_contig13459:14..335	1622815517.4148383-CDS-L-elsbetiae_contig13459:14..335	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig13459 15..335 +
1691682936.6870806-CDS-L-elsbetiae_contig13459:14..335	1691682936.6870806-CDS-L-elsbetiae_contig13459:14..335	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig13459 15..335 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig13459.2656.1	prot_L-elsbetiae_contig13459.2656.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig13459 15..335 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig13459:15..335+
coding sequence from alignment at L-elsbetiae_contig13459:15..335+

protein sequence of mRNA_L-elsbetiae_contig13459.2656.1

>prot_L-elsbetiae_contig13459.2656.1 ID=prot_L-elsbetiae_contig13459.2656.1|Name=mRNA_L-elsbetiae_contig13459.2656.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
RVIDDIHRSKSNMSDRERVSWVSRKVSSYIYADVTAGRLGPEEGGRHREA
LVQEFHRSYGGRCNLCNHELIWAVYSERQPTLDRLDCSLPHTIGNVDVKC
LKCNRAR

mRNA from alignment at L-elsbetiae_contig13459:15..335+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig13459.2656.1 ID=mRNA_L-elsbetiae_contig13459.2656.1|Name=mRNA_L-elsbetiae_contig13459.2656.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=321bp|location=Sequence derived from alignment at L-elsbetiae_contig13459:15..335+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGTCATCGACGATATTCACCGCAGCAAGAGCAACATGTCCGACCGAGA
GAGGGTATCATGGGTTTCTAGGAAAGTCTCGAGCTACATCTATGCCGACG
TTACGGCCGGGCGACTCGGGCCAGAAGAGGGTGGAAGGCACAGAGAAGCC
CTCGTCCAAGAATTTCACCGCTCCTACGGGGGGAGGTGCAACTTGTGCAA
CCATGAACTTATCTGGGCCGTTTACAGTGAACGGCAGCCAACGCTCGATC
GCCTAGATTGCTCTTTGCCCCACACGATCGGAAATGTGGACGTGAAATGC
CTAAAGTGCAACAGAGCAAGA

Coding sequence (CDS) from alignment at L-elsbetiae_contig13459:15..335+

>mRNA_L-elsbetiae_contig13459.2656.1 ID=mRNA_L-elsbetiae_contig13459.2656.1|Name=mRNA_L-elsbetiae_contig13459.2656.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig13459:15..335+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGTCATCGACGATATTCACCGCAGCAAGAGCAACATGTCCGACCGAGA
GAGGGTATCATGGGTTTCTAGGAAAGTCTCGAGCTACATCTATGCCGACG
TTACGGCCGGGCGACTCGGGCCAGAAGAGGGTGGAAGGCACAGAGAAGCC
CTCGTCCAAGAATTTCACCGCTCCTACGGGGGGAGGTGCAACTTGTGCAA
CCATGAACTTATCTGGGCCGTTTACAGTGAACGGCAGCCAACGCTCGATC
GCCTAGATTGCTCTTTGCCCCACACGATCGGAAATGTGGACGTGAAATGC
CTAAAGTGCAACAGAGCAAGAAGGGTCATCGACGATATTCACCGCAGCAA
GAGCAACATGTCCGACCGAGAGAGGGTATCATGGGTTTCTAGGAAAGTCT
CGAGCTACATCTATGCCGACGTTACGGCCGGGCGACTCGGGCCAGAAGAG
GGTGGAAGGCACAGAGAAGCCCTCGTCCAAGAATTTCACCGCTCCTACGG
GGGGAGGTGCAACTTGTGCAACCATGAACTTATCTGGGCCGTTTACAGTG
AACGGCAGCCAACGCTCGATCGCCTAGATTGCTCTTTGCCCCACACGATC
GGAAATGTGGACGTGAAATGCCTAAAGTGCAACAGAGCAAGA