mRNA_L-elsbetiae_contig13447.2651.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13447.2651.1
Unique NamemRNA_L-elsbetiae_contig13447.2651.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13447.2651.1 vs. uniprot
Match: D7G0H3_ECTSI (Carbon catabolite repressor protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H3_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 4.320e-21
Identity = 57/105 (54.29%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:   34 SPEACGSTLETVSSRIWPPSLEQGVWPADYNISDHGSLTASFRVAPA---------TALPLPREEAGGRNGPSVS---VSAXXXXXXSS---AVEEDDDGHYGLR 303
            S +ACGSTLE  SSRIWPPSLEQG WP+DY +SDHGSLTASFRVAPA         +A    R    G +    S   +S       SS   A  EDDDGHYGLR
Sbjct:  442 SGDACGSTLEPTSSRIWPPSLEQGHWPSDYTMSDHGSLTASFRVAPAREGAALARGSAERQHRSAGTGESSEESSENVISGVLSEAVSSDGTAHHEDDDGHYGLR 546
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BLAST of mRNA_L-elsbetiae_contig13447.2651.1 vs. uniprot
Match: A0A6H5L7F0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.170e-20
Identity = 54/105 (51.43%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:   34 SPEACGSTLETVSSRIWPPSLEQGVWPADYNISDHGSLTASFRVAPA---------TALPLPREEAGGRNGPSVS------VSAXXXXXXSSAVEEDDDGHYGLR 303
            S +ACGSTLE  SSRIWPPSLEQG WP+DY +SDHGSLT SFRVAPA         +A    R    G +    S      V +       +A  EDDDGHYGLR
Sbjct:  488 SGDACGSTLEPASSRIWPPSLEQGHWPSDYTMSDHGSLTTSFRVAPAREGATLARVSAKQQHRSPGTGESSQENSETTIGSVLSEAMSFDGTAHHEDDDGHYGLR 592
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13447.2651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0H3_ECTSI4.320e-2154.29Carbon catabolite repressor protein, putative n=1 ... [more]
A0A6H5L7F0_9PHAE1.170e-2051.43Endo/exonuclease/phosphatase domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13447contigL-elsbetiae_contig13447:1499..3525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue5.2e-18
Seed eggNOG ortholog2880.D7G0H3
KEGG koko:K19612,ko:K21777
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050896
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG2338@2759
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-19_003320.2
EC3.1.13.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03029,ko03032,ko03036
Exons2
Model size359
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13447.2651.1prot_L-elsbetiae_contig13447.2651.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13447 1499..3474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815516.9405515-CDS-L-elsbetiae_contig13447:1498..15611622815516.9405515-CDS-L-elsbetiae_contig13447:1498..1561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13447 1499..1561 +
1691682936.455209-CDS-L-elsbetiae_contig13447:1498..15611691682936.455209-CDS-L-elsbetiae_contig13447:1498..1561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13447 1499..1561 +
1622815516.9501412-CDS-L-elsbetiae_contig13447:3231..34741622815516.9501412-CDS-L-elsbetiae_contig13447:3231..3474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13447 3232..3474 +
1691682936.4686122-CDS-L-elsbetiae_contig13447:3231..34741691682936.4686122-CDS-L-elsbetiae_contig13447:3231..3474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13447 3232..3474 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815516.9646587-UTR-L-elsbetiae_contig13447:3474..35251622815516.9646587-UTR-L-elsbetiae_contig13447:3474..3525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13447 3475..3525 +
1691682936.4773402-UTR-L-elsbetiae_contig13447:3474..35251691682936.4773402-UTR-L-elsbetiae_contig13447:3474..3525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13447 3475..3525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13447.2651.1

>prot_L-elsbetiae_contig13447.2651.1 ID=prot_L-elsbetiae_contig13447.2651.1|Name=mRNA_L-elsbetiae_contig13447.2651.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
GVSGEGRVACSSPEACGSTLETVSSRIWPPSLEQGVWPADYNISDHGSLT
ASFRVAPATALPLPREEAGGRNGPSVSVSAAAAVSVSSAVEEDDDGHYGL
R*
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mRNA from alignment at L-elsbetiae_contig13447:1499..3525+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13447.2651.1 ID=mRNA_L-elsbetiae_contig13447.2651.1|Name=mRNA_L-elsbetiae_contig13447.2651.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2027bp|location=Sequence derived from alignment at L-elsbetiae_contig13447:1499..3525+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTCTCGGGGGAGGGTAGGGTGGCATGCTCCTCCCCAGAGGCTTGCGG
CTCCACGCTTGAGGTGTGTGCCATGGGGGGGGGAGGGCAGACCTGACACC
TGCCCTCTTCTTGTAGTACAACGGTATAGGAGTATATATAATGTTGCAGT
ATTTTGCGCCGAAAAACTGCTGGGGGTGCCGGTGTGTACCTTGAGAGGGG
GGGGGACCGTGAACCAGCGGCGATGTGATTTGTTTTTTCGGTGGTGTGGG
CCGCCCGGAGTGGCGAGGAGGGTTTTGTCGCCAGCCGTGTCTTGCGTTTT
GGGAAGGGGCGAAGTCATACTTCTACAATGGTATAGTCATGATTCAGTCG
ATACAATGTAGGCGTATGTATGTATTGTACGAACCGTGTGACCAGCGACC
AACAACTCAATCTTGTTGGTGGGTGGCGGCGCGTAAATTTAGGACCAAGT
TCCTCCGCCGAGTGCTTCACGACAGAAAGGAGGAAGGGAGGCGGGGGAGG
GGGGGCCCGTGTCGAGCGACGGGGCATGAGCATACATCCTGTCATATTGC
TGCATCCTGTCAGATGCCCCCCCCCCCCCCCCCCCCCCCCTCTCGGAGAA
ACAGGCGAAAACAGCAACACCACCAACAGCAGCCAGTTTAGTATGCCTTG
AGAAATAGTCAAAAACAATCAACACCACACCAACCCAAATACCTTTGAGA
AAGTCAAAAACAACATTACCAACACCAACACCAACAACCAAAATGCCTTG
GGCTGGGCTGGGCTGTGCTGCGCTCATTCGGGGATCTCAGTCGTTTGACC
ATCCCCGCCGAGGCGGAACGTGGATATCTCACGCGTGGTACTCCGTCCGG
GGGCATCGATTGTGACATGTTTTTGTGTGTGTGTGTAGAGTGGTGAGTAA
ACTTCTCAAGAGATAAGAGACGAGACGGATGGCGCGAAAGTAAAAGTAGG
ATTGCGTGATCATTTATTTCTCCTCTCATTTTTTTTTAGCAATGGCCATA
AACGGGTACATCCGAACGGTACCCAGCCAAAAACGGGTACCCTAATATTT
CCATATGAAAAGTCCTCCGGGACCATGTGACCATAAAGCATTTCTGAATC
GTGATTTTTGTGTCGCGTCTATATCATGAGGGCGTTTGACCTCGTCGTGG
TCCATGGCGAACATCACTGCTCATGACCGGTTCGGTGGTCAAGTTCTTGC
CCCTGGTACTAGGATAGGAATGTTCTGCCGCACGACAACAATGCCTCGCC
TTGGCGTGGCCACCGCGGTGACGCGGCTGCGTTTTCGATCTGCGCTTGTG
CGTTGTGTGGGCTGTTGTTTGAGTCTGCTGTGGCCATAATCGGGTACGGG
TGGTGAGAACCGGGTACACACCCGAGGGTTGAATAGCCAGAATCGGGTGT
ACCCGGCGGAAATACGGCCAGAATCGGGTATGGGGCGGGAAATTTCATTG
GTTCATTGAAAACGGTACCCGTTTTTGGCCGGATACGGTTCGGTTGTACC
CGTTTTTGGCCATTGCTTTCTTTTTTTCGCTTTTGCCCTCCGAAAAGCAG
ACATTCAGTGGCAGATATCAGATGTATTATTTTGTTTCCATCTTGCATAC
CCCGAGACACCGTGGTCGTACTGATCGCTGGTCGGTTTAAAGCAATGGTC
ACGATGAAGAAACATAACCGCGTGAGAAACACACACACACACACACCCCG
CGCCGCCGCCCTTGTCCACACCTCACCCTCCAGACGGTCTCGTCGCGTAT
ATGGCCGCCATCCTTGGAACAAGGCGTATGGCCAGCGGACTACAACATCA
GCGATCACGGATCGCTGACGGCGTCCTTCAGAGTCGCGCCAGCGACGGCG
CTGCCCCTGCCGCGCGAAGAAGCTGGCGGCAGAAACGGGCCCTCTGTCTC
GGTTTCCGCCGCCGCCGCCGTCTCTGTCTCATCGGCGGTCGAGGAGGACG
ACGACGGGCACTATGGGCTGCGCTGACTTGACTTTTAAGTTTTTTTTTTG
TTTTTTTCGCGCGGTGATGACGCGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13447:1499..3525+

>mRNA_L-elsbetiae_contig13447.2651.1 ID=mRNA_L-elsbetiae_contig13447.2651.1|Name=mRNA_L-elsbetiae_contig13447.2651.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig13447:1499..3525+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTCTCGGGGGAGGGTAGGGTGGCATGCTCCTCCCCAGAGGCTTGCGG
CTCCACGCTTGAGGGGGTCTCGGGGGAGGGTAGGGTGGCATGCTCCTCCC
CAGAGGCTTGCGGCTCCACGCTTGAGACGGTCTCGTCGCGTATATGGCCG
CCATCCTTGGAACAAGGCGTATGGCCAGCGGACTACAACATCAGCGATCA
CGGATCGCTGACGGCGTCCTTCAGAGTCGCGCCAGCGACGGCGCTGCCCC
TGCCGCGCGAAGAAGCTGGCGGCAGAAACGGGCCCTCTGTCTCGGTTTCC
GCCGCCGCCGCCGTCTCTGTCTCATCGGCGGTCGAGGAGGACGACGACGG
GCACTATGGGCTGCGCTGAACGGTCTCGTCGCGTATATGGCCGCCATCCT
TGGAACAAGGCGTATGGCCAGCGGACTACAACATCAGCGATCACGGATCG
CTGACGGCGTCCTTCAGAGTCGCGCCAGCGACGGCGCTGCCCCTGCCGCG
CGAAGAAGCTGGCGGCAGAAACGGGCCCTCTGTCTCGGTTTCCGCCGCCG
CCGCCGTCTCTGTCTCATCGGCGGTCGAGGAGGACGACGACGGGCACTAT
GGGCTGCGCTGA
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