mRNA_L-elsbetiae_contig13429.2642.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13429.2642.1
Unique NamemRNA_L-elsbetiae_contig13429.2642.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13429.2642.1 vs. uniprot
Match: D7G8P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P7_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 1.660e-83
Identity = 142/193 (73.58%), Postives = 164/193 (84.97%), Query Frame = 1 
Query:    1 MDEDVALAALLTALEELHNIRNEMHACIKQARHNRSPLTSGFLNMAKARRTMGRNSVSVLDTREHYSAEVTISVDAECDSEGRLEASKSIFSRNRVEPAAPPVVFRDGSLRQRGGVAAPVEIQESLLQPDQDAPLRGDSMSLFATLVPPPLRKSKKNFTSVVDYVVEASNLAHRILCLRKVLRDARGPLPAEP 579
            MDED AL+ALLTAL++LHNIRNEMH C+KQ          GFLNMA+ARR+MGRNSVSVLDTRE Y+AEVTI+++ E  SEGRL+ S+S+FSRNRVEPA   VV RDGSLRQRGG  A VEI+ESLLQPDQDAP+RGDSMSLFATLVPPPLRKSKKNFTSVVDY VEASNLAHRI+ L+K+L +A+G +P +P
Sbjct:    1 MDEDAALSALLTALDDLHNIRNEMHTCLKQ----------GFLNMARARRSMGRNSVSVLDTREEYAAEVTIAIE-EDTSEGRLQESRSMFSRNRVEPAGSAVVIRDGSLRQRGGGGAHVEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRIIHLQKML-EAKGQMPKDP 181
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BLAST of mRNA_L-elsbetiae_contig13429.2642.1 vs. uniprot
Match: A0A7S2H454_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H454_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.600e-16
Identity = 59/183 (32.24%), Postives = 96/183 (52.46%), Query Frame = 1 
Query:    4 DEDVALAALLTALEELHNIRNEMHACIKQARHNRSPLTSGFLNMAKARRTMGRNSVSVLDTREHYSAEVTISVDAECDSEGRLEASKSIFSRNRVEPAAPPVVFRDGSLRQRGGVAAPVEIQESLLQPDQDAPLRGDSMSLFATLVPPPLRKSKKNFTSVVDYVVEASNLAHRILCLRKVLRD 552
            D D  L ++L+  +E +  +  +   I++          GFLNMAKAR+++GR S++ LD RE+  A+ TI    +CD          I+ R+     AP     + +LR+RG      +  E +    + A    D M LF  LVPPP+R++ + FT+ ++++V A+NLA +I+   K LRD
Sbjct:    4 DADSKLLSILSQTDEFYAEQQRIAKAIRK----------GFLNMAKARQSLGRGSLTALDCRENVCAQFTIDAHTDCD---------DIWRRHSDTLNAP----EEKALRRRGA-GGNGKTNEDIQSVSEGAEDHNDPMLLFGGLVPPPMRRAGQEFTAAIEHIVTAANLAAKIIESEKELRD 162
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BLAST of mRNA_L-elsbetiae_contig13429.2642.1 vs. uniprot
Match: A0A7S2BYK8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYK8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.700e-14
Identity = 64/202 (31.68%), Postives = 105/202 (51.98%), Query Frame = 1 
Query:    7 EDVALAALLTALEELHNIRNEMHACIKQARHNRSPLTSGFLNMAKARRTMGRNSVSVLDTREHYSAEVTISVDAECDSEGRLEASKSIFSRNRVEPAAPPVVFRDGSLRQRG--GVAAPVEIQESLLQPDQDAPLRGDSMS---------LFATLVPPPLRKSKKNFTSVVDYVVEASNLAHRILCLRKVLRDARGPLPAEP 579
            ED AL AL    E++  +  E     K  R        GFLN+ KAR++MGRN++S L+ RE   A+V +    E       E +  ++ R+R  P A  V  ++G++R+RG  G++ P++ ++++     D P   D++          LF  LVPPP+RK+K +F   V++ + A+N+A  I    + +R A+ P  A P
Sbjct:   12 EDEALVALF---EKVDGLYAEQQRIAKSMR-------KGFLNITKARQSMGRNALSALNCRELVDAQVRVDATHE-------EDAGMLWERHRESPGA--VASQNGAVRRRGAGGLSGPID-EDTVSSHTPDEPAADDAVQGAAQKNTLMLFGGLVPPPMRKAKADFALAVEHCIAAANVAQSIALAEREIR-AKYPHMAPP 192
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BLAST of mRNA_L-elsbetiae_contig13429.2642.1 vs. uniprot
Match: A0A835YMR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 8.400e-13
Identity = 66/188 (35.11%), Postives = 88/188 (46.81%), Query Frame = 1 
Query:   25 ALLTALEELHNIRNEMHACIKQARHNRSPLTSGFLNMAKARRTMGRNS----VSVLDTREHYSAEVTISV---DAECDSEGRLEASK----SIFSRNRVEPA---APPVVFRDGSLRQRGGVAAPVEIQESLLQPDQDAPLRGDSMSLFATLVPPPLRKSKKNFTSVVDYVVEASNLAHRILCLRKVL 546
            ALL A +ELHN + E+  C+KQ          GF NM KAR   G  +    ++VLDTRE + A VT+ +   D +      L A K      F R   + A   +   V    SLRQR    +              A    DSM LF  LVPP LRK+K+NF+S +DYV  A+ L  R+  L + +
Sbjct:   28 ALLEAADELHNAKAELSLCLKQ----------GFFNMTKARLAAGGGAHSAGITVLDTREEFHAAVTVELLDKDPDASPARELRALKLPAGHAFQRAGNDDAPHSSGGSVNGSSSLRQRNHAGSXXXXXXXXXXXXXAA--GKDSMQLFGGLVPPALRKAKRNFSSALDYVFLAAELTQRVALLYRAV 203
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BLAST of mRNA_L-elsbetiae_contig13429.2642.1 vs. uniprot
Match: A0A7S2S2U0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2U0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.440e-9
Identity = 56/193 (29.02%), Postives = 96/193 (49.74%), Query Frame = 1 
Query:   10 DVALAALLTALEELHNIRNEMHACIKQARHNRSPLTSGFLNMAKARRTMGRNSVSVLDTREHYSAEVTISVDAECDSEGRLEASKSIFSRNRVEPAAPPVVFRDGS--LRQRGGVAAPVEIQESLLQPDQDAPLRGDSMSLFATLVPPPLRKSKKNFTSVVDYVVEASNLAHRILCLRKVLRDARGPLPAEPA 582
            D+A ++L    + L  +  E     ++ +     L  GFLN+ KAR++MGR +++ LD RE   A  + S+D    S+   +++  ++ R R       V  R G+  LR+RG      +  E+    D++   R D + LF  LVPP LR+++ +F   +D+ + A+N+ HR + LR  + D     P   A
Sbjct:    5 DMAESSLSPEDDALLGLLREACLYYEEQQKAAKALRRGFLNVTKARQSMGRGALTALDCREEMVA--SFSLDQSDVSQVDEQSALILWRRFRR------VASRSGAKTLRRRGSTPPSSDEPENTSVDDREE-AREDPVLLFGGLVPPTLRRAQADFQVALDFYISAANVIHRAMQLRARIGDLPAASPGPEA 188
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13429.2642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8P7_ECTSI1.660e-8373.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2H454_9STRA3.600e-1632.24Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2BYK8_9STRA5.700e-1431.68Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YMR8_9STRA8.400e-1335.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2S2U0_9STRA3.440e-929.02Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13429contigL-elsbetiae_contig13429:1537..3712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_002530.1
Exons4
Model size1612
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13429.2642.1prot_L-elsbetiae_contig13429.2642.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13429 2564..3712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.2130797-UTR-L-elsbetiae_contig13429:1536..25631622815514.2130797-UTR-L-elsbetiae_contig13429:1536..2563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13429 1537..2563 -
1691682935.823452-UTR-L-elsbetiae_contig13429:1536..25631691682935.823452-UTR-L-elsbetiae_contig13429:1536..2563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13429 1537..2563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.2235887-CDS-L-elsbetiae_contig13429:2563..26671622815514.2235887-CDS-L-elsbetiae_contig13429:2563..2667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13429 2564..2667 -
1691682935.8320673-CDS-L-elsbetiae_contig13429:2563..26671691682935.8320673-CDS-L-elsbetiae_contig13429:2563..2667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13429 2564..2667 -
1622815514.2369404-CDS-L-elsbetiae_contig13429:2874..31341622815514.2369404-CDS-L-elsbetiae_contig13429:2874..3134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13429 2875..3134 -
1691682935.8405-CDS-L-elsbetiae_contig13429:2874..31341691682935.8405-CDS-L-elsbetiae_contig13429:2874..3134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13429 2875..3134 -
1622815514.2530756-CDS-L-elsbetiae_contig13429:3334..34351622815514.2530756-CDS-L-elsbetiae_contig13429:3334..3435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13429 3335..3435 -
1691682935.84935-CDS-L-elsbetiae_contig13429:3334..34351691682935.84935-CDS-L-elsbetiae_contig13429:3334..3435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13429 3335..3435 -
1622815514.2634013-CDS-L-elsbetiae_contig13429:3592..37121622815514.2634013-CDS-L-elsbetiae_contig13429:3592..3712Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13429 3593..3712 -
1691682935.8587756-CDS-L-elsbetiae_contig13429:3592..37121691682935.8587756-CDS-L-elsbetiae_contig13429:3592..3712Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13429 3593..3712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13429.2642.1

>prot_L-elsbetiae_contig13429.2642.1 ID=prot_L-elsbetiae_contig13429.2642.1|Name=mRNA_L-elsbetiae_contig13429.2642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
MDEDVALAALLTALEELHNIRNEMHACIKQARHNRSPLTSGFLNMAKARR
TMGRNSVSVLDTREHYSAEVTISVDAECDSEGRLEASKSIFSRNRVEPAA
PPVVFRDGSLRQRGGVAAPVEIQESLLQPDQDAPLRGDSMSLFATLVPPP
LRKSKKNFTSVVDYVVEASNLAHRILCLRKVLRDARGPLPAEPA*
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mRNA from alignment at L-elsbetiae_contig13429:1537..3712-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13429.2642.1 ID=mRNA_L-elsbetiae_contig13429.2642.1|Name=mRNA_L-elsbetiae_contig13429.2642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2176bp|location=Sequence derived from alignment at L-elsbetiae_contig13429:1537..3712- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGAAGACGTCGCACTAGCAGCTCTGCTGACAGCACTGGAGGAACT
CCACAACATCCGAAATGAGATGCACGCCTGTATTAAGCAGGCAAGACATA
ATAGATCTCCACTGACGTCCGTCGATCAGGAGGCGCCGTCTACTGCGCAG
AACGTAGGATACTGCTGTACCTACCTGATGTGTACAATTTCCCACCACTG
CCACAGCAAACGCTTGTGTGGCTTGCCTTCTACACAAATCGCCCATATAT
TTATCGCGATCGTCGCTTGTTGCACAGGGTTTCTTGAATATGGCCAAGGC
GAGGAGGACCATGGGACGAAATTCTGTCAGTGTGCTCGACACAAGAGAGC
ATTACTCCGCAGAGGTGACAATTTCCGTGTGAGTAAAAGAATGAACCTGC
CATGTTAGAATGTCCTTTCCGGCATGGAGTCTAGATGACATACGGGTGCA
GCAGCCAATCGCAGCGAGTCTTGATGAGACTGGTAAGGTTAGCTTTCGCC
ATCATAAACTGCTTCGTGAAAGGTTGCAAGGGAACAGAGTGCACGTGCCC
CTCCTCCGCCTGTTGGACCCGGCGACAGAGACGCTGAGTGCGACTCGGAA
GGACGGTTGGAGGCGTCCAAGAGCATATTCTCGAGAAATAGGGTCGAGCC
TGCTGCGCCTCCAGTGGTGTTCCGTGACGGAAGCCTGCGCCAGCGCGGGG
GGGTTGCCGCGCCAGTGGAAATCCAGGAGTCTTTGCTGCAGCCAGATCAA
GATGCCCCCTTGCGAGGGGACTCGATGAGTTTGTTCGCGACATTGGTTCC
GCCACCGTTGCGGAAATCGAAGAAGAATTTCACATCTGGTGAGGCAAGTT
GTTATTTTGGGGCATCACTTCTCGTATGCCAGCTCTCTGCCAATCCAAAC
TGACAACAAAGGCGACGACATTCCGCGATGTACATACATACATACATACG
TGCGTCCTTGCCTGTTTCTGCATCGACAAATCGAAGGAGCGACGCCAAAC
CAGTTTACGCCATGCTCCCTTTACCTATTGCGTGCAAAAATGCAGTTGTC
GACTACGTCGTGGAAGCGTCAAATCTTGCACATCGTATCCTGTGCCTGCG
AAAAGTGTTGAGAGACGCGAGAGGACCGCTTCCCGCGGAGCCAGCTTGAG
CAAGTCGTCGGCGATCAGTTGGTGCTTGCAGGTGCACGGCAAGGCTCTGA
ACCGAAGCGTTCGCGCGCGGCAGCTGCCGCCGCTGGCCATGTTTGATCAA
TTTGATGCTAACCTGATTAAGGTGGTTACTAGATCGAATTGACCTCGGTA
GCTAACGTGCACGGACGCTTCGGTTTCCGTGCCGAGTCGACGCCAAAGAA
GGTGCGCACACGCAAGTATCGCCGGTGCAGGGTCGAGACCCCCGGTTGTT
CTGTGTGTTGAGTTCCGACAACTTGAGGGACAGGGCTCGGAGAGACAAAG
AGTAGGAAGGACAAACACCCAGGAATACTCATGAAGGTGCTCGGCGAAGC
AGAGGGGCGTCCGAGGACAGAGACGCTTTTTCAGCCAGAACGCGGGGAAC
ATTCCTTGTGGTGCTTTTTCCTGGTCGAGCTCTGATAAGCCGGCAGCCGG
CTAGACTCAACTATTTCTCTTCCACAGCACTCTCGTCGAGAGCACCCATC
CCCATGGGAACGGTGCGTGCCCAAGTCGTAAGTTTGAAAGTTGCGGCGTT
GTCTTTTTATATCGTCGGTCGACGTCTGTTCGCCGTGTGTCGAATAAAAT
ACCAGCACGTGTTTGGAATTGTGGTGCGCTCTCCTCTGTAACAGATGGAG
TAGTAATTATTTGTCTGTTGCTCTTCCAGCTGGTTCACACCCTCCATGAG
AACCTATTCATCACGAAATGACCACCCGTAACACTGCATGCACCACGCAG
CACAGCTTTGAATTCCCGGGTAGGGATTCCAGGAGAGAGCCCCAAGCGGC
ACTTGTTTTTTTATAGCGGTTCTTTTCTGCCATGTCCCACATTAAATGCC
GTAGATCTCTCTCCAGCCCAGCCTGTCTCAACGCAAAATCGTTTTTTGCG
CTTTGAAACAAGAACTGATACCATAATTCCTCAGTCGATCCTTGGAGTTG
GCTGTCTTCAGGTAGCTCACACTGTTTGTTGGTAGCAGAGCAGAGATCAG
TATGTACCACGGTCGACCGTTTGAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13429:1537..3712-

>mRNA_L-elsbetiae_contig13429.2642.1 ID=mRNA_L-elsbetiae_contig13429.2642.1|Name=mRNA_L-elsbetiae_contig13429.2642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig13429:1537..3712- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGAAGACGTCGCACTAGCAGCTCTGCTGACAGCACTGGAGGAACT
CCACAACATCCGAAATGAGATGCACGCCTGTATTAAGCAGGCAAGACATA
ATAGATCTCCACTGACGTCCATGGACGAAGACGTCGCACTAGCAGCTCTG
CTGACAGCACTGGAGGAACTCCACAACATCCGAAATGAGATGCACGCCTG
TATTAAGCAGGCAAGACATAATAGATCTCCACTGACGTCCGGTTTCTTGA
ATATGGCCAAGGCGAGGAGGACCATGGGACGAAATTCTGTCAGTGTGCTC
GACACAAGAGAGCATTACTCCGCAGAGGTGACAATTTCCGTGGTTTCTTG
AATATGGCCAAGGCGAGGAGGACCATGGGACGAAATTCTGTCAGTGTGCT
CGACACAAGAGAGCATTACTCCGCAGAGGTGACAATTTCCGTAGACGCTG
AGTGCGACTCGGAAGGACGGTTGGAGGCGTCCAAGAGCATATTCTCGAGA
AATAGGGTCGAGCCTGCTGCGCCTCCAGTGGTGTTCCGTGACGGAAGCCT
GCGCCAGCGCGGGGGGGTTGCCGCGCCAGTGGAAATCCAGGAGTCTTTGC
TGCAGCCAGATCAAGATGCCCCCTTGCGAGGGGACTCGATGAGTTTGTTC
GCGACATTGGTTCCGCCACCGTTGCGGAAATCGAAGAAGAATTTCACATC
TGAGACGCTGAGTGCGACTCGGAAGGACGGTTGGAGGCGTCCAAGAGCAT
ATTCTCGAGAAATAGGGTCGAGCCTGCTGCGCCTCCAGTGGTGTTCCGTG
ACGGAAGCCTGCGCCAGCGCGGGGGGGTTGCCGCGCCAGTGGAAATCCAG
GAGTCTTTGCTGCAGCCAGATCAAGATGCCCCCTTGCGAGGGGACTCGAT
GAGTTTGTTCGCGACATTGGTTCCGCCACCGTTGCGGAAATCGAAGAAGA
ATTTCACATCTGTTGTCGACTACGTCGTGGAAGCGTCAAATCTTGCACAT
CGTATCCTGTGCCTGCGAAAAGTGTTGAGAGACGCGAGAGGACCGCTTCC
CGCGGAGCCAGCTTGATTGTCGACTACGTCGTGGAAGCGTCAAATCTTGC
ACATCGTATCCTGTGCCTGCGAAAAGTGTTGAGAGACGCGAGAGGACCGC
TTCCCGCGGAGCCAGCTTGA
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