mRNA_L-elsbetiae_contig1341.2626.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1341.2626.1
Unique NamemRNA_L-elsbetiae_contig1341.2626.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1341.2626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1341contigL-elsbetiae_contig1341:10599..11050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815512.4235718-CDS-L-elsbetiae_contig1341:10598..109431622815512.4235718-CDS-L-elsbetiae_contig1341:10598..10943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1341 10599..10943 +
1691682934.9025834-CDS-L-elsbetiae_contig1341:10598..109431691682934.9025834-CDS-L-elsbetiae_contig1341:10598..10943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1341 10599..10943 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815512.4391136-UTR-L-elsbetiae_contig1341:10943..110501622815512.4391136-UTR-L-elsbetiae_contig1341:10943..11050Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1341 10944..11050 +
1691682934.912553-UTR-L-elsbetiae_contig1341:10943..110501691682934.912553-UTR-L-elsbetiae_contig1341:10943..11050Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1341 10944..11050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1341.2626.1prot_L-elsbetiae_contig1341.2626.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1341 10599..10943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1341.2626.1

>prot_L-elsbetiae_contig1341.2626.1 ID=prot_L-elsbetiae_contig1341.2626.1|Name=mRNA_L-elsbetiae_contig1341.2626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
CLFVECRASHAPYCTLNVQRFLYKHAAFPPLLCLSLTRHCCNCVYIWFPL
RARQPVRSYASSLFLAYAASGGCHPGVNLCGRSSHTKTPINLQGTRFPVQ
VAACWIFVYCLRRG*
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mRNA from alignment at L-elsbetiae_contig1341:10599..11050+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1341.2626.1 ID=mRNA_L-elsbetiae_contig1341.2626.1|Name=mRNA_L-elsbetiae_contig1341.2626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=452bp|location=Sequence derived from alignment at L-elsbetiae_contig1341:10599..11050+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCTATTTGTGGAATGTCGGGCAAGCCATGCTCCGTATTGTACTCTCAA
TGTGCAACGTTTTCTCTACAAGCACGCAGCTTTTCCTCCTCTTTTGTGTC
TGTCTCTCACGAGGCACTGTTGTAATTGTGTGTACATTTGGTTTCCGCTG
CGTGCGCGCCAGCCAGTCCGCTCTTATGCAAGCTCGCTTTTTTTGGCCTA
TGCCGCGAGTGGCGGATGTCACCCCGGAGTAAATTTATGTGGGCGGTCCT
CACACACAAAGACACCTATCAACCTACAGGGAACCCGGTTTCCAGTTCAA
GTTGCCGCGTGCTGGATATTTGTTTACTGCTTGCGGAGAGGGTAGAGGAA
CGCACGTGCGTGCGGCATGCATGAATAAACTACTCCTTGTGATTGATGGT
TTTTGTTGCAACATATTTATAGGCGATTCTCTGCTCCCCAGCCAAAAACC
CC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1341:10599..11050+

>mRNA_L-elsbetiae_contig1341.2626.1 ID=mRNA_L-elsbetiae_contig1341.2626.1|Name=mRNA_L-elsbetiae_contig1341.2626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig1341:10599..11050+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCTATTTGTGGAATGTCGGGCAAGCCATGCTCCGTATTGTACTCTCAA
TGTGCAACGTTTTCTCTACAAGCACGCAGCTTTTCCTCCTCTTTTGTGTC
TGTCTCTCACGAGGCACTGTTGTAATTGTGTGTACATTTGGTTTCCGCTG
CGTGCGCGCCAGCCAGTCCGCTCTTATGCAAGCTCGCTTTTTTTGGCCTA
TGCCGCGAGTGGCGGATGTCACCCCGGAGTAAATTTATGTGGGCGGTCCT
CACACACAAAGACACCTATCAACCTACAGGGAACCCGGTTTCCAGTTCAA
GTTGCCGCGTGCTGGATATTTGTTTACTGCTTGCGGAGAGGGTAGTGCCT
ATTTGTGGAATGTCGGGCAAGCCATGCTCCGTATTGTACTCTCAATGTGC
AACGTTTTCTCTACAAGCACGCAGCTTTTCCTCCTCTTTTGTGTCTGTCT
CTCACGAGGCACTGTTGTAATTGTGTGTACATTTGGTTTCCGCTGCGTGC
GCGCCAGCCAGTCCGCTCTTATGCAAGCTCGCTTTTTTTGGCCTATGCCG
CGAGTGGCGGATGTCACCCCGGAGTAAATTTATGTGGGCGGTCCTCACAC
ACAAAGACACCTATCAACCTACAGGGAACCCGGTTTCCAGTTCAAGTTGC
CGCGTGCTGGATATTTGTTTACTGCTTGCGGAGAGGGTAG
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