mRNA_L-elsbetiae_contig13405.2623.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13405.2623.1
Unique NamemRNA_L-elsbetiae_contig13405.2623.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13405.2623.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.250e-7
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = -2 
Query:  156 LARSGMASRRAAGRLVEAGVATVNGTPVQTPALNVGLRYMVKVKFRL 296
            +ARSG+ASRR A R+VEAGV  VNG  VQTPALNVG R +VKV   L
Sbjct:  119 IARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGL 165
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BLAST of mRNA_L-elsbetiae_contig13405.2623.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.820e-7
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = -2 
Query:  156 LARSGMASRRAAGRLVEAGVATVNGTPVQTPALNVGLRYMVKVKFRL 296
            +ARSG+ASRR A R+VEAGV  VNG  VQTPALNVG R +VKV   L
Sbjct:  119 IARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGL 165
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13405.2623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9J6_9PHAE2.250e-768.09S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LDE8_ECTSI2.820e-768.09RNA pseudouridylate synthase domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13405contigL-elsbetiae_contig13405:2363..2758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815512.3788538-UTR-L-elsbetiae_contig13405:2362..23681622815512.3788538-UTR-L-elsbetiae_contig13405:2362..2368Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13405 2363..2368 +
1691682934.8823824-UTR-L-elsbetiae_contig13405:2362..23681691682934.8823824-UTR-L-elsbetiae_contig13405:2362..2368Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13405 2363..2368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815512.3902493-CDS-L-elsbetiae_contig13405:2368..27581622815512.3902493-CDS-L-elsbetiae_contig13405:2368..2758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13405 2369..2758 +
1691682934.8924654-CDS-L-elsbetiae_contig13405:2368..27581691682934.8924654-CDS-L-elsbetiae_contig13405:2368..2758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13405 2369..2758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13405.2623.1prot_L-elsbetiae_contig13405.2623.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13405 2369..2758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13405.2623.1

>prot_L-elsbetiae_contig13405.2623.1 ID=prot_L-elsbetiae_contig13405.2623.1|Name=mRNA_L-elsbetiae_contig13405.2623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MLKPFTVHIGFISLINRSILIQSDWAHTTERSAGPPRTLLCLNQNDNKEP
NLNLTLTMYRSPTFSAGVCTGVPFTVATPASTRRPAARREAMPDLARHTA
RQAHHENVLHLQSQYLVHAPLALGRAGGAV
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mRNA from alignment at L-elsbetiae_contig13405:2363..2758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13405.2623.1 ID=mRNA_L-elsbetiae_contig13405.2623.1|Name=mRNA_L-elsbetiae_contig13405.2623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig13405:2363..2758+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCAGATGCTCAAACCCTTTACTGTTCATATCGGTTTCATTTCGCTGAT
CAACAGATCCATCTTGATCCAATCCGATTGGGCGCATACCACTGAGCGGA
GTGCCGGCCCGCCCCGTACCCTACTGTGCCTAAATCAAAACGACAACAAA
GAGCCTAACCTAAACTTGACTTTGACCATGTATCGGAGCCCCACGTTCAG
CGCCGGGGTCTGCACCGGTGTTCCGTTCACCGTCGCCACCCCCGCCTCCA
CCAGGCGCCCGGCCGCTCGACGGGAAGCCATGCCGGACCTCGCGAGACAT
ACGGCGAGACAGGCGCATCATGAAAACGTCCTTCATCTGCAATCGCAGTA
TCTCGTTCACGCCCCCCTCGCTTTAGGCCGCGCCGGAGGCGCTGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13405:2363..2758+

>mRNA_L-elsbetiae_contig13405.2623.1 ID=mRNA_L-elsbetiae_contig13405.2623.1|Name=mRNA_L-elsbetiae_contig13405.2623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig13405:2363..2758+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCAAACCCTTTACTGTTCATATCGGTTTCATTTCGCTGATCAACAG
ATCCATCTTGATCCAATCCGATTGGGCGCATACCACTGAGCGGAGTGCCG
GCCCGCCCCGTACCCTACTGTGCCTAAATCAAAACGACAACAAAGAGCCT
AACCTAAACTTGACTTTGACCATGTATCGGAGCCCCACGTTCAGCGCCGG
GGTCTGCACCGGTGTTCCGTTCACCGTCGCCACCCCCGCCTCCACCAGGC
GCCCGGCCGCTCGACGGGAAGCCATGCCGGACCTCGCGAGACATACGGCG
AGACAGGCGCATCATGAAAACGTCCTTCATCTGCAATCGCAGTATCTCGT
TCACGCCCCCCTCGCTTTAGGCCGCGCCGGAGGCGCTGTGATGCTCAAAC
CCTTTACTGTTCATATCGGTTTCATTTCGCTGATCAACAGATCCATCTTG
ATCCAATCCGATTGGGCGCATACCACTGAGCGGAGTGCCGGCCCGCCCCG
TACCCTACTGTGCCTAAATCAAAACGACAACAAAGAGCCTAACCTAAACT
TGACTTTGACCATGTATCGGAGCCCCACGTTCAGCGCCGGGGTCTGCACC
GGTGTTCCGTTCACCGTCGCCACCCCCGCCTCCACCAGGCGCCCGGCCGC
TCGACGGGAAGCCATGCCGGACCTCGCGAGACATACGGCGAGACAGGCGC
ATCATGAAAACGTCCTTCATCTGCAATCGCAGTATCTCGTTCACGCCCCC
CTCGCTTTAGGCCGCGCCGGAGGCGCTGTG
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