mRNA_L-elsbetiae_contig134.2617.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig134.2617.1
Unique NamemRNA_L-elsbetiae_contig134.2617.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig134.2617.1 vs. uniprot
Match: D7G4X8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X8_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.820e-14
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 2 
Query:   29 CTRHGCTKQPSFGIAGSKAE*CRDHAKGGMVNVFNNKCTFPGCTTIASYGEESSGTRKFCARHAEEGMVHLSGR 250
            CT +GCT++P+ G+AG KAE C  H+    VNV + +C+  GC+T A YG   S  R+F ++HA EGMV+LS R
Sbjct:   50 CTLYGCTRKPTHGVAGKKAEFCARHSLATSVNV-SQECSIDGCSTRAHYGVAGSKKREFXSKHALEGMVNLSNR 122
[Close]
BLAST of mRNA_L-elsbetiae_contig134.2617.1 vs. uniprot
Match: A0A836CAB2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAB2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.200e-7
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 2 
Query:   92 CRDHAKGGMVNVFNNKCTFPGCTTIASYGEESSGTRKFCARHAEEGMVHL 241
            C+ HA  G  +++ + C  PGCTT A YG  S+G ++ CARH E+GMV +
Sbjct:   16 CKQHAPPGTRSLYRS-CEAPGCTTHAYYGYVSTGVKRSCARHKEDGMVFI 64
[Close]
BLAST of mRNA_L-elsbetiae_contig134.2617.1 vs. uniprot
Match: A0A6G8MZ28_9VIRU (Uncharacterized protein n=1 Tax=Cedratvirus kamchatka TaxID=2716914 RepID=A0A6G8MZ28_9VIRU)

HSP 1 Score: 55.5 bits (132), Expect = 1.280e-6
Identity = 27/74 (36.49%), Postives = 37/74 (50.00%), Query Frame = 2 
Query:   23 KRCTRHGCTKQPSFGIAGSKAE*-CRDHAKGGMVNVFNNKCTFPGCTTIASYGEESSGTRKFCARHAEEGMVHL 241
            KRC    C K+PS   +G K    C  H K  M NV ++KCT+P C  +A+YG   +    +C  H  E  V +
Sbjct:   40 KRCLE--CNKRPSHNYSGEKVPIYCATHKKSDMENVVSDKCTYPSCKILATYGLPGTKKALYCKLHKPENTVDV 111
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig134.2617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4X8_ECTSI4.820e-1448.65EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A836CAB2_9STRA9.200e-746.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6G8MZ28_9VIRU1.280e-636.49Uncharacterized protein n=1 Tax=Cedratvirus kamcha... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig134contigL-elsbetiae_contig134:15293..15623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size216
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.59591-UTR-L-elsbetiae_contig134:15292..154071622815511.59591-UTR-L-elsbetiae_contig134:15292..15407Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig134 15293..15407 +
1691682934.465447-UTR-L-elsbetiae_contig134:15292..154071691682934.465447-UTR-L-elsbetiae_contig134:15292..15407Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig134 15293..15407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.6057198-CDS-L-elsbetiae_contig134:15407..156231622815511.6057198-CDS-L-elsbetiae_contig134:15407..15623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig134 15408..15623 +
1691682934.4739304-CDS-L-elsbetiae_contig134:15407..156231691682934.4739304-CDS-L-elsbetiae_contig134:15407..15623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig134 15408..15623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig134.2617.1prot_L-elsbetiae_contig134.2617.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig134 15408..15623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig134.2617.1

>prot_L-elsbetiae_contig134.2617.1 ID=prot_L-elsbetiae_contig134.2617.1|Name=mRNA_L-elsbetiae_contig134.2617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
MVNVFNNKCTFPGCTTIASYGEESSGTRKFCARHAEEGMVHLSGRSRGDS
KRSGEANDAGARSSGTASGSRQ
back to top

mRNA from alignment at L-elsbetiae_contig134:15293..15623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig134.2617.1 ID=mRNA_L-elsbetiae_contig134.2617.1|Name=mRNA_L-elsbetiae_contig134.2617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=331bp|location=Sequence derived from alignment at L-elsbetiae_contig134:15293..15623+ (Laminarionema elsbetiae ELsaHSoW15)
GATGGTGTACGTGAACAACAGGAAGAGATGCACCCGCCACGGTTGCACCA
AGCAGCCGTCATTCGGCATTGCTGGCAGCAAGGCCGAGTAATGCCGTGAC
CATGCCAAGGGCGGGATGGTGAATGTCTTCAACAATAAATGCACCTTTCC
CGGGTGCACCACGATTGCCAGCTACGGCGAGGAGAGCAGTGGCACCCGGA
AGTTCTGCGCGCGGCACGCCGAAGAAGGGATGGTCCATCTTTCTGGCCGG
TCCAGGGGAGACAGCAAAAGAAGCGGTGAAGCTAATGACGCCGGAGCAAG
GAGTAGCGGCACAGCTAGCGGGAGCAGACAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig134:15293..15623+

>mRNA_L-elsbetiae_contig134.2617.1 ID=mRNA_L-elsbetiae_contig134.2617.1|Name=mRNA_L-elsbetiae_contig134.2617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig134:15293..15623+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAATGTCTTCAACAATAAATGCACCTTTCCCGGGTGCACCACGAT
TGCCAGCTACGGCGAGGAGAGCAGTGGCACCCGGAAGTTCTGCGCGCGGC
ACGCCGAAGAAGGGATGGTCCATCTTTCTGGCCGGTCCAGGGGAGACAGC
AAAAGAAGCGGTGAAGCTAATGACGCCGGAGCAAGGAGTAGCGGCACAGC
TAGCGGGAGCAGACAGATGGTGAATGTCTTCAACAATAAATGCACCTTTC
CCGGGTGCACCACGATTGCCAGCTACGGCGAGGAGAGCAGTGGCACCCGG
AAGTTCTGCGCGCGGCACGCCGAAGAAGGGATGGTCCATCTTTCTGGCCG
GTCCAGGGGAGACAGCAAAAGAAGCGGTGAAGCTAATGACGCCGGAGCAA
GGAGTAGCGGCACAGCTAGCGGGAGCAGACAG
back to top